IslandPath Analysis: Acidiphilium cryptum JF-5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.17   STD DEV: 5.03
Acidiphilium cryptum JF-5, complete genome - 1..3389227
3063 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1282	 74.31	+1	1453700..1454353	-	217	148260303	-	Acry_1300	-	hypothetical protein
1283	 66.50	0	1454416..1456215	+	599	148260304	-	Acry_1301	-	poly(R)-hydroxyalkanoic acid synthase, class I
1284	 76.55	+1	1456212..1457294	+	360	148260305	-	Acry_1302	-	glycosyl transferase, group 1
1285	 70.52	0	1457308..1458603	+	431	148260306	-	Acry_1303	-	hypothetical protein
1286	 65.32	0	1458600..1459562	+	320	148260307	-	Acry_1304	-	cobalamin synthesis protein, P47K
1287	 70.11	0	1459559..1460605	+	348	148260308	-	Acry_1305	-	WD-40 repeat-containing protein
1288	 68.97	0	1460607..1461431	+	274	148260309	-	Acry_1306	-	aldo/keto reductase
1289	 68.69	0	1461498..1463330	-	610	148260310	-	Acry_1307	-	GTP-binding protein TypA
1290	 74.51	+1	1463474..1463983	-	169	148260311	-	Acry_1308	-	hypothetical protein
1291	 72.34	0	1464003..1465430	+	475	148260312	-	Acry_1309	-	major facilitator transporter
1292	 72.77	0	1465441..1467309	-	622	148260313	-	Acry_1310	-	ABC transporter related
1293	 67.38	0	1467404..1467826	+	140	148260314	-	Acry_1311	-	nucleoside-diphosphate kinase
1294	 67.49	0	1467892..1468254	-	120	148260315	-	Acry_1312	-	hypothetical protein
1295	 68.68	0	1468422..1469462	+	346	148260316	-	Acry_1313	-	cell shape determining protein MreB
1296	 71.90	0	1469509..1470387	+	292	148260317	-	Acry_1314	-	UspA domain-containing protein
1297	 73.56	+1	1470400..1470849	+	149	148260318	-	Acry_1315	-	MarR family transcriptional regulator
1298	 70.48	0	1470930..1471637	+	235	148260319	-	Acry_1316	-	pirin domain-containing protein
1299	 68.70	0	1471857..1473383	+	508	148260320	-	Acry_1317	-	protease Do
1300	 66.45	0	1473540..1474466	+	308	148260321	-	Acry_1318	-	sulfate adenylyltransferase subunit 2
1301	 69.72	0	1474466..1476331	+	621	148260322	-	Acry_1319	-	sulfate adenylyltransferase, large subunit
1302	 71.53	0	1476406..1477515	+	369	148260323	-	Acry_1320	-	chorismate synthase
1303	 73.15	0	1477688..1478782	-	364	148260324	-	Acry_1321	-	hypothetical protein
1304	 65.87	0	1478850..1480106	+	418	148260325	-	Acry_1322	-	extracellular ligand-binding receptor
1305	 75.69	+1	1480246..1480677	+	143	148260326	-	Acry_1323	-	hypothetical protein
1306	 70.57	0	1480764..1482173	-	469	148260327	-	Acry_1324	-	2-alkenal reductase
1307	 73.88	+1	1482178..1483023	-	281	148260328	-	Acry_1325	-	glutamyl-tRNA synthetase, class Ic
1308	 75.78	+1	1483073..1483741	+	222	148260329	-	Acry_1326	-	phospholipase/carboxylesterase
1309	 65.95	0	1483889..1484449	+	186	148260330	-	Acry_1327	-	HNH endonuclease
1310	 67.98	0	1484503..1485717	+	404	148260331	-	Acry_1328	-	tryptophan synthase subunit beta
1311	 73.41	+1	1485714..1486544	+	276	148260332	trpA	Acry_1329	-	tryptophan synthase subunit alpha
1312	 73.85	+1	1486669..1487934	-	421	148260333	-	Acry_1330	-	phosphoribosylamine--glycine ligase
1313	 74.15	+1	1487989..1489377	+	462	148260334	-	Acry_1331	-	exodeoxyribonuclease VII, large subunit
1314	 78.16	+1	1489390..1490094	-	234	148260335	-	Acry_1332	-	hypothetical protein
1315	 70.31	0	1490091..1490666	-	191	148260336	-	Acry_1333	-	ECF subfamily RNA polymerase sigma-24 factor
1316	 69.98	0	1491134..1491586	+	150	148260337	-	Acry_1334	-	ferric uptake regulator family protein
1317	 68.51	0	1491583..1492395	+	270	148260338	-	Acry_1335	-	putative hemolysin-like protein
1318	 72.16	0	1492456..1492965	+	169	148260339	-	Acry_1336	-	hypothetical protein
1319	 66.48	0	1492981..1494627	+	548	148260340	-	Acry_1337	-	tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit
1320	 67.93	0	1494635..1495030	+	131	148260341	-	Acry_1338	-	glyoxalase/bleomycin resistance protein/dioxygenase
1321	 74.08	+1	1495027..1496064	+	345	148260342	-	Acry_1339	-	queuosine biosynthesis protein
1322	 71.62	0	1496061..1497191	+	376	148260343	-	Acry_1340	-	queuine tRNA-ribosyltransferase
1323	 68.82	0	1497172..1497636	+	154	148260344	-	Acry_1341	-	7-cyano-7-deazaguanine reductase
1324	 72.98	0	1497629..1498690	+	353	148260345	-	Acry_1342	-	hypothetical protein
1325	 63.40	0	1498776..1499234	+	152	148260346	-	Acry_1343	-	large conductance mechanosensitive channel protein
1326	 66.97	0	1499429..1500082	+	217	148260347	-	Acry_1344	-	hypothetical protein
1327	 77.73	+1	1500222..1500926	-	234	148260348	-	Acry_1345	-	LrgB family protein
1328	 77.85	+1	1500919..1501356	-	145	148260349	-	Acry_1346	-	LrgA family protein
1329	 75.38	+1	1501461..1502390	+	309	148260350	-	Acry_1347	-	LysR family transcriptional regulator
1330	 71.73	0	1502467..1503849	+	460	148260351	-	Acry_1348	-	UDP-glucose 6-dehydrogenase
1331	 72.97	0	1503842..1505587	+	581	148260352	-	Acry_1349	-	methyltransferase type 11
1332	 77.91	+1	1505612..1508752	+	1046	148260353	-	Acry_1350	-	methyltransferase type 12
1333	 71.15	0	1508815..1509795	+	326	148260354	-	Acry_1351	-	lipopolysaccharide biosynthesis protein-like protein
1334	 73.92	+1	1509792..1510604	+	270	148260355	-	Acry_1352	-	phospholipid/glycerol acyltransferase
1335	 70.95	0	1510745..1512097	+	450	148260356	-	Acry_1353	-	RNA modification protein
1336	 71.76	0	1512094..1513095	+	333	148260357	-	Acry_1354	-	PhoH family protein
1337	 75.50	+1	1513092..1513544	+	150	148260358	-	Acry_1355	-	hypothetical protein
1338	 69.54	0	1513526..1514395	+	289	148260359	-	Acry_1356	-	CBS domain-containing protein
1339	 77.78	+1	1514520..1514735	+	71	148260360	-	Acry_1357	-	hypothetical protein
1340	 77.82	+1	1514858..1515682	-	274	148260361	-	Acry_1358	-	hypothetical protein
1341	 71.79	0	1515654..1515965	-	103	148260362	-	Acry_1359	-	hypothetical protein
1342	 62.46	-1	1516009..1516626	-	205	148260363	-	Acry_1360	-	hypothetical protein
1343	 78.26	+2	1516818..1517438	+	206	148260364	-	Acry_1361	-	hypothetical protein
1344	 70.98	0	1517445..1519298	-	617	148260365	-	Acry_1362	-	ABC transporter related
1345	 66.67	0	1519521..1520570	+	349	148260366	-	Acry_1363	-	glycosyl transferase, group 1
1346	 72.04	0	1520849..1521685	+	278	148260367	-	Acry_1364	-	ABC transporter related
1347	 70.19	0	1521682..1522731	+	349	148260368	-	Acry_1365	-	monosaccharide-transporting ATPase
1348	 66.97	0	1522776..1523765	+	329	148260369	-	Acry_1366	-	periplasmic binding protein/LacI transcriptional regulator
1349	 76.98	+1	1523874..1525385	+	503	148260370	-	Acry_1367	-	Ada metal-binding domain-containing protein
1350	 76.70	+1	1525375..1525932	+	185	148260371	-	Acry_1368	-	methylated-DNA--protein-cysteine methyltransferase
1351	 70.44	0	1525969..1527162	+	397	148260372	-	Acry_1369	-	Serine--glyoxylate transaminase
1352	 60.17	-1	1527322..1527783	+	153	148260373	-	Acry_1370	-	hypothetical protein
1353	 66.92	0	1527803..1528588	+	261	148260374	-	Acry_1371	-	hypothetical protein
1354	 61.16	-1	1528626..1528988	+	120	148260375	-	Acry_1372	-	hypothetical protein
1355	 74.56	+1	1528966..1529193	-	75	148260376	-	Acry_1373	-	hypothetical protein
1356	 69.81	0	1529728..1530204	+	158	148260377	-	Acry_1374	-	hypothetical protein
1357	 68.58	0	1530323..1532257	+	644	148260378	-	Acry_1375	-	Fis family GAF modulated sigma54 specific transcriptional regulator
1358	 69.97	0	1532301..1533935	-	544	148260379	groEL	Acry_1376	-	chaperonin GroEL
1359	 59.92	-1	1533980..1535002	-	340	148260380	-	Acry_1377	-	amidohydrolase 2
1360	 57.18	-2	1535080..1535448	-	122	148260381	-	Acry_1378	-	monooxygenase component MmoB/DmpM
1361	 63.83	0	1535472..1536527	-	351	148260382	-	Acry_1379	-	methane/phenol/toluene hydroxylase
1362	 62.27	-1	1536570..1537661	-	363	148260383	-	Acry_1380	-	oxidoreductase FAD/NAD(P)-binding subunit
1363	 62.47	-1	1537745..1539412	-	555	148260384	-	Acry_1381	-	methane monooxygenase
1364	 64.12	0	1539911..1540381	+	156	148260385	-	Acry_1382	-	hypothetical protein
1365	 69.90	0	1540378..1540686	+	102	148260386	-	Acry_1383	-	hypothetical protein
1366	 73.30	+1	1540703..1541833	+	376	148260387	-	Acry_1384	-	hypothetical protein
1367	 65.54	0	1541860..1542036	+	58	148260388	-	Acry_1385	-	hypothetical protein
1368	 68.56	0	1542044..1542307	-	87	148260389	-	Acry_1386	-	hypothetical protein
1369	 61.62	-1	1542598..1542993	+	131	148260390	-	Acry_1387	-	glyoxalase/bleomycin resistance protein/dioxygenase
1370	 65.20	0	1543009..1543212	-	67	148260391	-	Acry_1388	-	hypothetical protein
1371	 72.48	0	1543342..1543788	-	148	148260392	-	Acry_1389	-	thioredoxin domain-containing protein
1372	 66.97	0	1543781..1545088	-	435	148260393	-	Acry_1390	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1373	 69.42	0	1545646..1546008	+	120	148260394	-	Acry_1392	-	rhodanese domain-containing protein
1374	 71.51	0	1546049..1547059	+	336	148260395	-	Acry_1393	-	RND family efflux transporter MFP subunit
1375	 68.01	0	1547056..1550325	+	1089	148260396	-	Acry_1394	-	acriflavin resistance protein
1376	 68.24	0	1550457..1550711	+	84	148260397	-	Acry_1395	-	XRE family transcriptional regulator
1377	 71.73	0	1550708..1552723	+	671	148260398	-	Acry_1396	-	hydrogenase 4 subunit B
1378	 68.03	0	1552714..1553670	+	318	148260399	-	Acry_1397	-	formate hydrogenlyase subunit 4-like protein
1379	 68.26	0	1553667..1554356	+	229	148260400	-	Acry_1398	-	hydrogenase 4 membrane component (E)-like protein
1380	 67.98	0	1554353..1555801	+	482	148260401	-	Acry_1399	-	hydrogenase 4 subunit F
1381	 71.01	0	1555764..1557212	+	482	148260402	-	Acry_1400	-	NADH-ubiquinone oxidoreductase, chain 49kDa
68.17	MEAN

5.03	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.