IslandPathversion 1.0

IslandPath Analysis: Acidiphilium cryptum JF-5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.17 STD DEV: 5.03
Acidiphilium cryptum JF-5, complete genome - 1..3389227
3063 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1094	 69.58	0	1238560..1238868	-	102	148260115	-	Acry_1111	-	NADH-ubiquinone oxidoreductase, chain 4L
1095	 69.06	0	1238873..1239373	-	166	148260116	-	Acry_1112	-	NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
1096	 62.57	-1	1239405..1239917	-	170	148260117	-	Acry_1113	-	NADH-quinone oxidoreductase, chain I
1097	 65.02	0	1239931..1240902	-	323	148260118	-	Acry_1114	-	NADH dehydrogenase subunit H
1098	 72.09	0	1240899..1243607	-	902	148260119	-	Acry_1115	-	NADH-quinone oxidoreductase, chain G
1099	 70.11	0	1243604..1244908	-	434	148260120	-	Acry_1116	-	NADH dehydrogenase (quinone)
1100	 70.68	0	1244908..1245405	-	165	148260121	-	Acry_1117	-	NADH-quinone oxidoreductase, E subunit
1101	 65.26	0	1245392..1247170	-	592	148260122	-	Acry_1118	-	bifunctional NADH:ubiquinone oxidoreductase subunit C/D
1102	 66.24	0	1247181..1247876	-	231	148260123	-	Acry_1119	-	NADH-quinone oxidoreductase, B subunit
1103	 62.91	-1	1247881..1248279	-	132	148260124	-	Acry_1120	-	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
1104	 71.78	0	1248465..1251122	-	885	148260125	-	Acry_1121	-	ATPase, P-type (transporting), HAD superfamily, subfamily IC
1105	 67.35	0	1251109..1252125	-	338	148260126	-	Acry_1122	-	sodium/calcium exchanger membrane region
1106	 71.71	0	1252318..1253367	-	349	148260127	-	Acry_1123	-	oxidoreductase domain-containing protein
1107	 71.29	0	1253445..1254461	-	338	148260128	-	Acry_1124	-	molybdopterin dehydrogenase, FAD-binding
1108	 73.02	0	1254458..1256722	-	754	148260129	-	Acry_1125	-	aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
1109	 71.13	0	1256785..1257591	+	268	148260130	-	Acry_1126	-	hypothetical protein
1110	 69.53	0	1257588..1257866	+	92	148260131	-	Acry_1127	-	hypothetical protein
1111	 68.82	0	1257875..1259173	+	432	148260132	-	Acry_1128	-	cation diffusion facilitator family transporter
1112	 68.43	0	1259205..1259600	-	131	148260133	-	Acry_1129	-	MerR family transcriptional regulator
1113	 71.61	0	1259679..1260386	+	235	148260134	-	Acry_1130	-	Co/Zn/Cd cation transporter-like protein
1114	 68.21	0	1260419..1261393	+	324	148260135	-	Acry_1131	-	cation diffusion facilitator family transporter
1115	 68.32	0	1261415..1262929	-	504	148260136	-	Acry_1132	-	multicopper oxidase, type 2
1116	 51.85	-2	1262999..1263322	-	107	148260137	-	Acry_1133	-	hypothetical protein
1117	 59.27	-1	1263582..1264757	+	391	148260138	-	Acry_1134	-	acyltransferase 3
1118	 60.85	-1	1265131..1265955	+	274	148260139	-	Acry_1135	-	extracellular solute-binding protein
1119	 62.28	-1	1265971..1266723	+	250	148260140	-	Acry_1136	-	polar amino acid ABC transporter, inner membrane subunit
1120	 64.05	0	1266723..1267487	+	254	148260141	-	Acry_1137	-	ABC transporter related
1121	 68.29	0	1267534..1268520	-	328	148260142	-	Acry_1138	-	inner-membrane translocator
1122	 69.75	0	1268517..1269521	-	334	148260143	-	Acry_1139	-	monosaccharide-transporting ATPase
1123	 70.16	0	1269508..1271082	-	524	148260144	-	Acry_1140	-	ABC transporter related
1124	 65.20	0	1271108..1272199	-	363	148260145	-	Acry_1141	-	ABC-type sugar transport system periplasmic component-like protein
1125	 68.67	0	1272301..1273350	-	349	148260146	-	Acry_1142	-	4-hydroxythreonine-4-phosphate dehydrogenase
1126	 72.80	0	1273484..1274608	-	374	148260147	-	Acry_1143	-	hypothetical protein
1127	 70.74	0	1274605..1275438	-	277	148260148	-	Acry_1144	-	DeoR family transcriptional regulator
1128	 70.64	0	1275490..1276470	-	326	148260149	-	Acry_1145	-	AraC family transcriptional regulator
1129	 61.37	-1	1276580..1277221	+	213	148260150	-	Acry_1146	-	metal-dependent phosphohydrolase
1130	 63.19	0	1277263..1278702	+	479	148260151	-	Acry_1147	-	catalase
1131	 69.68	0	1278571..1280031	-	486	148260152	-	Acry_1148	-	amidohydrolase
1132	 63.21	0	1280041..1281429	-	462	148260153	-	Acry_1149	-	permease for cytosine/purines, uracil, thiamine, allantoin
1133	 73.66	+1	1281469..1282011	-	180	148260154	-	Acry_1150	-	hypothetical protein
1134	 66.17	0	1282008..1283207	-	399	148260155	-	Acry_1151	-	hypothetical protein
1135	 66.95	0	1283213..1283563	-	116	148260156	-	Acry_1152	-	transthyretin
1136	 70.22	0	1283652..1284524	-	290	148260157	-	Acry_1153	-	hypothetical protein
1137	 68.84	0	1284521..1286959	-	812	148260158	-	Acry_1154	-	xanthine dehydrogenase
1138	 70.52	0	1286956..1288512	-	518	148260159	-	Acry_1155	-	molybdopterin dehydrogenase, FAD-binding
1139	 72.20	0	1288607..1289527	-	306	148260160	-	Acry_1156	-	LysR family transcriptional regulator
1140	 67.73	0	1289682..1291466	+	594	148260161	-	Acry_1157	-	glyoxylate carboligase
1141	 68.03	0	1291486..1292292	+	268	148260162	-	Acry_1158	-	hydroxypyruvate isomerase
1142	 69.62	0	1292289..1293167	+	292	148260163	-	Acry_1159	-	2-hydroxy-3-oxopropionate reductase
1143	 73.71	+1	1293167..1294486	+	439	148260164	-	Acry_1160	-	hydroxypyruvate reductase
1144	 71.53	0	1294492..1295787	+	431	148260165	-	Acry_1161	-	amidase
1145	 69.32	0	1295790..1297034	+	414	148260166	-	Acry_1162	-	peptidase M20
1146	 67.10	0	1297072..1297995	+	307	148260167	-	Acry_1163	-	chitin deacetylase
1147	 65.15	0	1298015..1298938	+	307	148260168	-	Acry_1164	-	LysR family transcriptional regulator
1148	 65.78	0	1298942..1299280	-	112	148260169	-	Acry_1165	-	hypothetical protein
1149	 72.34	0	1299633..1302785	-	1050	148260170	-	Acry_1166	-	triple helix repeat-containing collagen
1150	 53.33	-2	1302857..1303126	-	89	148260171	-	Acry_1167	-	hypothetical protein
1151	 52.27	-2	1303307..1303813	+	168	148260172	-	Acry_1168	-	hypothetical protein
1152	 59.00	-1	1304227..1304487	+	86	148260173	-	Acry_1169	-	hypothetical protein
1153	 62.79	-1	1304664..1305902	+	412	148260174	-	Acry_1170	-	phage integrase family protein
1154	 58.36	-1	1306311..1308464	+	717	148260175	-	Acry_1171	-	hypothetical protein
1155	 58.14	-1	1308565..1309326	+	253	148260176	-	Acry_1172	-	hypothetical protein
1156	 56.06	-2	1309319..1309714	+	131	148260177	-	Acry_1173	-	hypothetical protein
1157	 45.12	-2	1309852..1310742	+	296	148260178	-	Acry_1174	-	hypothetical protein
1158	 44.18	-2	1310946..1311572	+	208	148260179	-	Acry_1175	-	hypothetical protein
1159	 52.78	-2	1311716..1312183	+	155	148260180	-	Acry_1176	-	hypothetical protein
1160	 64.86	0	1312752..1313306	-	184	148260181	-	Acry_1177	-	peptidyl-prolyl cis-trans isomerase, cyclophilin type
1161	 62.75	-1	1313303..1313812	-	169	148260182	-	Acry_1178	-	pantetheine-phosphate adenylyltransferase
1162	 68.42	0	1313805..1316537	-	910	148260183	-	Acry_1179	-	DNA gyrase subunit A
1163	 74.12	+1	1316583..1317293	-	236	148260184	-	Acry_1180	-	phytoene/squalene synthetase-like protein
1164	 64.69	0	1317411..1318016	+	201	148260185	-	Acry_1181	-	superoxide dismutase
1165	 64.44	0	1318086..1318445	-	119	148260186	-	Acry_1182	-	preprotein translocase, YajC subunit
1166	 68.39	0	1318556..1319425	+	289	148260187	-	Acry_1183	-	hypothetical protein
1167	 73.73	+1	1319492..1320241	+	249	148260188	-	Acry_1184	-	TonB family protein
1168	 66.04	0	1320320..1321918	+	532	148260189	-	Acry_1185	-	extracellular solute-binding protein
1169	 66.46	0	1321924..1322868	+	314	148260190	-	Acry_1186	-	binding-protein-dependent transport systems inner membrane component
1170	 71.18	0	1322865..1323728	+	287	148260191	-	Acry_1187	-	binding-protein-dependent transport systems inner membrane component
1171	 70.59	0	1323725..1325557	+	610	148260192	-	Acry_1188	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
1172	 66.22	0	1325554..1326225	+	223	148260193	-	Acry_1189	-	MotA/TolQ/ExbB proton channel
1173	 62.56	-1	1326229..1326642	+	137	148260194	-	Acry_1190	-	biopolymer transport protein ExbD/TolR
1174	 71.76	0	1326608..1327549	+	313	148260195	xerC	Acry_1191	-	site-specific tyrosine recombinase XerC
1175	 70.79	0	1327552..1328085	-	177	148260196	-	Acry_1192	-	GCN5-related N-acetyltransferase
1176	 71.27	0	1328082..1329362	-	426	148260197	-	Acry_1193	-	Fmu (Sun) domain-containing protein
1177	 68.67	0	1329366..1330865	-	499	148260198	-	Acry_1194	-	inosine-5'-monophosphate dehydrogenase
1178	 66.97	0	1331421..1333379	+	652	148260199	-	Acry_1195	-	AMP-dependent synthetase and ligase
1179	 65.05	0	1333387..1334004	-	205	148260200	-	Acry_1196	-	hypothetical protein
1180	 69.78	0	1334037..1334999	-	320	148260201	-	Acry_1197	-	hypothetical protein
1181	 70.42	0	1335010..1335915	-	301	148260202	-	Acry_1198	-	polyprenyl synthetase
1182	 70.04	0	1335912..1336178	-	88	148260203	-	Acry_1199	-	exodeoxyribonuclease VII, small subunit
1183	 69.68	0	1336217..1337146	-	309	148260204	-	Acry_1200	-	histone deacetylase superfamily protein
1184	 68.82	0	1337175..1337453	-	92	148260205	-	Acry_1201	-	SirA family protein
1185	 70.01	0	1337539..1338435	+	298	148260206	-	Acry_1202	-	ROK family protein
1186	 70.56	0	1338445..1339215	-	256	148260207	-	Acry_1203	-	3'(2'),5'-bisphosphate nucleotidase
1187	 71.52	0	1339308..1340852	+	514	148260208	-	Acry_1204	-	leucyl aminopeptidase
1188	 70.11	0	1340917..1341933	+	338	148260209	-	Acry_1205	-	capsular polysaccharide biosynthesis protein-like protein
1189	 64.96	0	1341924..1342451	-	175	148260210	-	Acry_1206	-	hypothetical protein
1190	 72.81	0	1342448..1344514	-	688	148260211	-	Acry_1207	-	protein of unknown function DUF893, YccS/YhfK
1191	 68.41	0	1344501..1346735	-	744	148260212	-	Acry_1208	-	DNA topoisomerase IV subunit A
1192	 73.28	+1	1346725..1347480	-	251	148260213	-	Acry_1209	-	DNA repair protein RecO
1193	 72.30	0	1347493..1348716	-	407	148260214	-	Acry_1210	-	hypothetical protein
68.17	MEAN

5.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.