IslandPath Analysis: Acidiphilium cryptum JF-5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.17   STD DEV: 5.03
Acidiphilium cryptum JF-5, complete genome - 1..3389227
3063 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
62	 64.26	0	66270..67433	+	387	148259083	-	Acry_0062	-	cell cycle protein
63	 71.82	0	67430..68536	+	368	148259084	murG	Acry_0063	-	N-acetylglucosaminyl transferase
64	 67.85	0	68533..69972	+	479	148259085	murC	Acry_0064	-	UDP-N-acetylmuramate--L-alanine ligase
65	 73.01	0	69969..70898	+	309	148259086	-	Acry_0065	-	UDP-N-acetylenolpyruvoylglucosamine reductase
66	 67.77	0	70895..71800	+	301	148259087	-	Acry_0066	-	D-alanine--D-alanine ligase
67	 69.28	0	71788..72666	+	292	148259088	-	Acry_0067	-	polypeptide-transport-associated domain-containing protein
68	 68.80	0	72674..73987	+	437	148259089	-	Acry_0068	-	cell division protein FtsA
69	 68.26	0	74052..75620	+	522	148259090	-	Acry_0069	-	cell division protein FtsZ
70	 68.23	0	75755..76138	+	127	148259091	-	Acry_0070	-	hypothetical protein
71	 70.44	0	76201..78294	+	697	148259092	-	Acry_0071	-	ComEC/Rec2-related protein
72	 69.01	0	78221..79246	-	341	148259093	-	Acry_0072	-	glycosyl transferase family protein
73	 68.48	0	79236..80720	-	494	148259094	-	Acry_0073	-	sugar transferase
74	 66.21	0	80774..81214	-	146	148259095	-	Acry_0074	-	GtrA family protein
75	 63.86	0	81403..81900	+	165	148259096	-	Acry_0075	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
76	 64.21	0	81966..84371	+	801	148259097	-	Acry_0076	-	aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
77	 64.78	0	84384..85178	+	264	148259098	-	Acry_0077	-	carbon-monoxide dehydrogenase (acceptor)
78	 63.74	0	85538..86461	+	307	148259099	-	Acry_0078	-	pyrroloquinoline quinone biosynthesis protein PqqB
79	 64.91	0	86458..87198	+	246	148259100	-	Acry_0079	-	pyrroloquinoline quinone biosynthesis protein PqqC
80	 61.96	-1	87195..87470	+	91	148259101	-	Acry_0080	-	coenzyme PQQ synthesis D
81	 63.73	0	87467..88588	+	373	148259102	-	Acry_0081	-	pyrroloquinoline quinone biosynthesis protein PqqE
82	 67.15	0	88570..89400	-	276	148259103	-	Acry_0082	-	RNA methyltransferase
83	 62.39	-1	89808..90368	+	186	148259104	-	Acry_0083	-	hypothetical protein
84	 67.07	0	90445..93444	-	999	148259105	-	Acry_0084	-	hypothetical protein
85	 65.52	0	93545..94156	-	203	148259106	-	Acry_0085	-	nicotinamidase
86	 63.35	0	94285..95037	+	250	148259107	-	Acry_0086	-	short-chain dehydrogenase/reductase SDR
87	 64.20	0	95049..96830	+	593	148259108	-	Acry_0087	-	dihydroxy-acid dehydratase
88	 64.78	0	96885..97679	-	264	148259109	-	Acry_0088	-	hypothetical protein
89	 62.80	-1	97812..98225	-	137	148259110	-	Acry_0089	-	MerR family transcriptional regulator
90	 61.80	-1	98250..101312	-	1020	148259111	-	Acry_0090	-	acriflavin resistance protein
91	 61.27	-1	101322..102506	-	394	148259112	-	Acry_0091	-	RND family efflux transporter MFP subunit
92	 62.90	-1	102503..104176	-	557	148259113	-	Acry_0092	-	RND efflux system outer membrane lipoprotein
93	 62.90	-1	104218..104907	+	229	148259114	-	Acry_0093	-	TetR family transcriptional regulator
94	 64.71	0	104863..105732	-	289	148259115	-	Acry_0094	-	PaaX family transcriptional regulator
95	 61.90	-1	105939..106820	-	293	148259116	-	Acry_0095	-	transposase, IS4 family protein
96	 63.71	0	107093..107329	-	78	148259117	-	Acry_0096	-	hypothetical protein
97	 64.42	0	107462..108439	-	325	148259118	-	Acry_0097	-	transposase, IS4 family protein
98	 63.12	-1	108572..108994	+	140	148259119	-	Acry_0098	-	transposase
99	 58.91	-1	109937..110284	+	115	148259120	-	Acry_0100	-	hypothetical protein
100	 55.04	-2	110302..110688	+	128	148259121	-	Acry_0101	-	transposase, IS4 family protein
101	 59.62	-1	110707..111912	-	401	148259122	-	Acry_0102	-	aminotransferase, class I and II
102	 52.50	-2	111944..114145	-	733	148259123	-	Acry_0103	-	TPR repeat-containing protein
103	 55.18	-2	114138..114929	-	263	148259124	-	Acry_0104	-	TPR repeat-containing protein
104	 46.62	-2	114995..115867	-	290	148259125	-	Acry_0105	-	hypothetical protein
105	 54.17	-2	115953..116216	+	87	148259126	-	Acry_0106	-	hypothetical protein
106	 55.89	-2	116241..116639	-	132	148259127	-	Acry_0107	-	flagellar biosynthesis regulator FlbT-like protein
107	 52.88	-2	116711..117595	-	294	148259128	-	Acry_0108	-	flagellin domain-containing protein
108	 54.39	-2	118749..120206	-	485	148259129	-	Acry_0109	-	flagellar hook-associated protein FlgK
109	 56.49	-2	120249..121526	-	425	148259130	flgE	Acry_0110	-	flagellar hook protein FlgE
110	 63.38	0	121659..122114	-	151	148259131	-	Acry_0111	-	hypothetical protein
111	 64.33	0	122185..123468	+	427	148259132	-	Acry_0112	-	hypothetical protein
112	 61.15	-1	123517..124278	+	253	148259133	-	Acry_0113	-	flagellar hook capping protein
113	 55.79	-2	124372..125823	-	483	148259134	-	Acry_0114	-	hypothetical protein
114	 66.51	0	126107..127360	-	417	148259135	-	Acry_0115	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
115	 65.25	0	127815..129011	+	398	148259136	-	Acry_0116	-	ROK family protein
116	 67.64	0	129367..130599	-	410	148259137	-	Acry_0117	-	amine oxidase
117	 69.07	0	130596..131468	-	290	148259138	-	Acry_0118	-	squalene/phytoene synthase
118	 66.67	0	131468..132304	-	278	148259139	-	Acry_0119	-	squalene/phytoene synthase
119	 68.17	0	132301..133428	-	375	148259140	-	Acry_0120	-	glycosyl transferase family protein
120	 66.21	0	133425..134510	-	361	148259141	-	Acry_0121	-	NAD-dependent epimerase/dehydratase
121	 66.95	0	134658..135707	+	349	148259142	-	Acry_0122	-	hypothetical protein
122	 59.61	-1	135777..136031	+	84	148259143	-	Acry_0123	-	transglycosylase-associated protein
123	 66.58	0	136075..137256	+	393	148259144	-	Acry_0124	-	acyltransferase 3
124	 70.89	0	137216..138400	-	394	148259145	-	Acry_0125	-	HemY domain-containing protein
125	 69.71	0	138400..139353	-	317	148259146	-	Acry_0126	-	hypothetical protein
126	 70.87	0	139350..140063	-	237	148259147	-	Acry_0127	-	uroporphyrinogen III synthase HEM4
127	 68.76	0	140056..141057	-	333	148259148	-	Acry_0128	-	porphobilinogen deaminase
128	 70.79	0	141081..142172	+	363	148259149	-	Acry_0129	-	metalloendopeptidase glycoprotease family
129	 65.36	0	142327..144843	+	838	148259150	-	Acry_0130	-	glycogen/starch/alpha-glucan phosphorylase
130	 63.13	-1	144902..146173	+	423	148259151	glgC	Acry_0131	-	glucose-1-phosphate adenylyltransferase
131	 66.53	0	146176..147615	+	479	148259152	-	Acry_0132	-	glycogen/starch synthase, ADP-glucose type
132	 62.79	-1	147623..150715	-	1030	148259153	-	Acry_0133	-	acriflavin resistance protein
133	 67.54	0	150719..153916	-	1065	148259154	-	Acry_0134	-	acriflavin resistance protein
134	 65.98	0	153913..155073	-	386	148259155	-	Acry_0135	-	RND family efflux transporter MFP subunit
135	 68.92	0	155076..156584	-	502	148259156	-	Acry_0136	-	RND efflux system outer membrane lipoprotein
136	 67.03	0	156613..157167	-	184	148259157	-	Acry_0137	-	phosphoglycerate mutase
137	 71.47	0	157294..157959	+	221	148259158	-	Acry_0138	-	import inner membrane translocase, subunit Tim44
138	 69.16	0	157963..159165	+	400	148259159	-	Acry_0139	-	MltA domain-containing protein
139	 70.45	0	159162..159953	+	263	148259160	-	Acry_0140	-	hypothetical protein
140	 63.50	0	159950..161842	+	630	148259161	-	Acry_0141	-	K+ potassium transporter
141	 73.49	+1	161848..162345	+	165	148259162	-	Acry_0142	-	hypothetical protein
142	 71.88	0	162327..162671	+	114	148259163	-	Acry_0143	-	hypothetical protein
143	 72.33	0	162788..165346	+	852	148259164	-	Acry_0144	-	GCN5-related N-acetyltransferase
144	 68.00	0	165383..166282	+	299	148259165	-	Acry_0145	-	hypothetical protein
145	 66.10	0	166351..167226	-	291	148259166	-	Acry_0146	-	3-hydroxybutyryl-CoA dehydrogenase
146	 68.80	0	167310..168245	-	311	148259167	-	Acry_0147	-	electron transfer flavoprotein, alpha subunit
147	 66.40	0	168248..168997	-	249	148259168	-	Acry_0148	-	electron transfer flavoprotein beta-subunit
148	 72.85	0	169102..172176	-	1024	148259169	-	Acry_0149	-	hypothetical protein
149	 72.92	0	172194..175103	+	969	148259170	-	Acry_0150	-	(glutamate--ammonia-ligase) adenylyltransferase
150	 65.82	0	175100..175573	+	157	148259171	-	Acry_0151	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
151	 67.30	0	175669..176145	+	158	148259172	-	Acry_0152	-	disulphide bond formation protein DsbB
152	 69.22	0	176142..176690	+	182	148259173	-	Acry_0153	-	ubiquinone biosynthesis protein COQ7
153	 72.02	0	176760..177413	+	217	148259174	-	Acry_0154	-	hypothetical protein
154	 61.81	-1	177497..177970	+	157	148259175	-	Acry_0155	-	phasin family protein
155	 65.20	0	177999..180185	+	728	148259176	-	Acry_0156	-	excinuclease ABC subunit B
156	 63.41	0	180182..181009	+	275	148259177	-	Acry_0157	-	hypothetical protein
157	 69.91	0	181110..181787	-	225	148259178	-	Acry_0158	-	hypothetical protein
158	 63.29	0	182359..182802	+	147	148259179	-	Acry_0159	-	hypothetical protein
159	 67.28	0	182795..183283	+	162	148259180	-	Acry_0160	-	hypothetical protein
160	 69.20	0	183407..184510	+	367	148259181	mtnA	Acry_0161	-	methylthioribose-1-phosphate isomerase
161	 68.51	0	184507..185319	+	270	148259182	-	Acry_0162	-	hypothetical protein
68.17	MEAN

5.03	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.