IslandPath Analysis: Acidiphilium cryptum JF-5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.17   STD DEV: 5.03
Acidiphilium cryptum JF-5, complete genome - 1..3389227
3063 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1042	 73.25	+1	1176276..1177019	-	247	148260063	-	Acry_1055	-	dihydrodipicolinate reductase
1043	 72.36	0	1177080..1177553	-	157	148260064	-	Acry_1056	-	GCN5-related N-acetyltransferase
1044	 66.85	0	1177556..1179190	-	544	148260065	-	Acry_1057	-	electron-transferring-flavoprotein dehydrogenase
1045	 71.72	0	1179272..1180102	+	276	148260066	-	Acry_1058	-	phage SPO1 DNA polymerase-related protein
1046	 71.59	0	1180214..1182040	+	608	148260067	-	Acry_1059	-	lytic transglycosylase, catalytic
1047	 71.20	0	1182101..1183777	+	558	148260068	-	Acry_1060	-	TPR repeat-containing protein
1048	 71.59	0	1183832..1184887	-	351	148260069	-	Acry_1061	-	oxidoreductase domain-containing protein
1049	 63.32	0	1184972..1185958	-	328	148260070	-	Acry_1062	-	periplasmic binding protein/LacI transcriptional regulator
1050	 68.12	0	1186018..1187115	-	365	148260071	-	Acry_1063	-	monosaccharide-transporting ATPase
1051	 68.18	0	1187112..1188626	-	504	148260072	-	Acry_1064	-	ABC transporter related
1052	 69.12	0	1188623..1189396	-	257	148260073	-	Acry_1065	-	periplasmic lipoprotein-like protein
1053	 70.24	0	1189581..1190336	+	251	148260074	-	Acry_1066	-	transcriptional regulator NanR
1054	 72.91	0	1190417..1191682	+	421	148260075	-	Acry_1067	-	ribulose-bisphosphate carboxylase
1055	 74.93	+1	1191679..1193070	+	463	148260076	-	Acry_1068	-	type III effector Hrp-dependent outer protein
1056	 69.64	0	1193067..1193906	+	279	148260077	-	Acry_1069	-	hypothetical protein
1057	 66.48	0	1193965..1195008	+	347	148260078	-	Acry_1070	-	ABC-type sugar transport system periplasmic component-like protein
1058	 74.03	+1	1195024..1197480	+	818	148260079	-	Acry_1071	-	inner-membrane translocator
1059	 72.75	0	1197477..1198430	+	317	148260080	-	Acry_1072	-	inner-membrane translocator
1060	 71.22	0	1198499..1199245	+	248	148260081	-	Acry_1073	-	NADPH-dependent FMN reductase
1061	 73.29	+1	1199256..1200191	+	311	148260082	-	Acry_1074	-	phosphate transporter
1062	 68.43	0	1201026..1202162	+	378	148260083	-	Acry_1076	-	MscS mechanosensitive ion channel
1063	 73.92	+1	1202181..1202759	-	192	148260084	-	Acry_1077	-	nitrile hydratase
1064	 71.09	0	1202756..1203049	-	97	148260085	-	Acry_1078	-	hypothetical protein
1065	 67.28	0	1203043..1203369	-	108	148260086	-	Acry_1079	-	hypothetical protein
1066	 70.31	0	1203515..1204942	-	475	148260087	-	Acry_1080	-	major facilitator transporter
1067	 72.13	0	1205141..1206403	+	420	148260088	-	Acry_1081	-	fumarylacetoacetase
1068	 71.87	0	1206464..1207405	-	313	148260089	-	Acry_1082	-	hypothetical protein
1069	 78.20	+1	1207440..1208072	-	210	148260090	-	Acry_1083	-	hypothetical protein
1070	 71.43	0	1208098..1208664	-	188	148260091	-	Acry_1084	-	hypothetical protein
1071	 69.52	0	1208787..1210400	+	537	148260092	-	Acry_1085	-	hypothetical protein
1072	 73.75	+1	1210422..1211339	-	305	148260093	-	Acry_1086	-	alpha/beta hydrolase domain-containing protein
1073	 72.82	0	1211351..1212211	-	286	148260094	-	Acry_1087	-	short-chain dehydrogenase/reductase SDR
1074	 71.67	0	1212236..1213735	-	499	148260095	-	Acry_1088	-	flavoprotein involved in K+ transport-like protein
1075	 70.61	0	1213871..1214554	+	227	148260096	-	Acry_1089	-	TetR family transcriptional regulator
1076	 66.04	0	1214603..1216198	-	531	148260097	-	Acry_1090	-	isocitrate lyase
1077	 77.33	+1	1216395..1217069	-	224	148260098	-	Acry_1091	-	hypothetical protein
1078	 75.71	+1	1217059..1217622	-	187	148260099	-	Acry_1092	-	ECF subfamily RNA polymerase sigma-24 factor
1079	 71.82	0	1217696..1218064	-	122	148260100	-	Acry_1093	-	hypothetical protein
1080	 68.13	0	1218064..1218678	-	204	148260101	-	Acry_1094	-	Heme/copper-type cytochrome/quinol oxidase subunit 3-like protein
1081	 65.07	0	1218675..1220744	-	689	148260102	-	Acry_1095	-	cytochrome-c oxidase
1082	 67.46	0	1220770..1221774	-	334	148260103	-	Acry_1096	-	cytochrome c oxidase, subunit II
1083	 73.68	+1	1222151..1222963	+	270	148260104	-	Acry_1097	-	hypothetical protein
1084	 70.52	0	1222977..1223987	-	336	148260105	-	Acry_1098	-	bile acid:sodium symporter
1085	 74.10	+1	1224048..1224962	+	304	148260106	-	Acry_1099	-	LysR family transcriptional regulator
1086	 70.81	0	1224990..1225931	-	313	148260107	-	Acry_1100	-	methyltransferase type 11
1087	 56.41	-2	1226267..1226578	-	103	148260108	-	Acry_1101	-	hypothetical protein
1088	 65.61	0	1229056..1229715	+	219	148260109	-	Acry_1104	-	resolvase domain-containing protein
1089	 65.06	0	1229654..1232644	+	996	148260110	-	Acry_1105	-	transposase Tn3 family protein
1090	 67.13	0	1233013..1233444	-	143	148260111	-	Acry_1107	-	signal-transduction protein
1091	 70.50	0	1233728..1235188	-	486	148260112	-	Acry_1108	-	proton-translocating NADH-quinone oxidoreductase, chain N
1092	 67.98	0	1235185..1236702	-	505	148260113	-	Acry_1109	-	proton-translocating NADH-quinone oxidoreductase, chain M
1093	 70.22	0	1236699..1238555	-	618	148260114	-	Acry_1110	-	proton-translocating NADH-quinone oxidoreductase, chain L
1094	 69.58	0	1238560..1238868	-	102	148260115	-	Acry_1111	-	NADH-ubiquinone oxidoreductase, chain 4L
1095	 69.06	0	1238873..1239373	-	166	148260116	-	Acry_1112	-	NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
1096	 62.57	-1	1239405..1239917	-	170	148260117	-	Acry_1113	-	NADH-quinone oxidoreductase, chain I
1097	 65.02	0	1239931..1240902	-	323	148260118	-	Acry_1114	-	NADH dehydrogenase subunit H
1098	 72.09	0	1240899..1243607	-	902	148260119	-	Acry_1115	-	NADH-quinone oxidoreductase, chain G
1099	 70.11	0	1243604..1244908	-	434	148260120	-	Acry_1116	-	NADH dehydrogenase (quinone)
1100	 70.68	0	1244908..1245405	-	165	148260121	-	Acry_1117	-	NADH-quinone oxidoreductase, E subunit
1101	 65.26	0	1245392..1247170	-	592	148260122	-	Acry_1118	-	bifunctional NADH:ubiquinone oxidoreductase subunit C/D
1102	 66.24	0	1247181..1247876	-	231	148260123	-	Acry_1119	-	NADH-quinone oxidoreductase, B subunit
1103	 62.91	-1	1247881..1248279	-	132	148260124	-	Acry_1120	-	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
1104	 71.78	0	1248465..1251122	-	885	148260125	-	Acry_1121	-	ATPase, P-type (transporting), HAD superfamily, subfamily IC
1105	 67.35	0	1251109..1252125	-	338	148260126	-	Acry_1122	-	sodium/calcium exchanger membrane region
1106	 71.71	0	1252318..1253367	-	349	148260127	-	Acry_1123	-	oxidoreductase domain-containing protein
1107	 71.29	0	1253445..1254461	-	338	148260128	-	Acry_1124	-	molybdopterin dehydrogenase, FAD-binding
1108	 73.02	0	1254458..1256722	-	754	148260129	-	Acry_1125	-	aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
1109	 71.13	0	1256785..1257591	+	268	148260130	-	Acry_1126	-	hypothetical protein
1110	 69.53	0	1257588..1257866	+	92	148260131	-	Acry_1127	-	hypothetical protein
1111	 68.82	0	1257875..1259173	+	432	148260132	-	Acry_1128	-	cation diffusion facilitator family transporter
1112	 68.43	0	1259205..1259600	-	131	148260133	-	Acry_1129	-	MerR family transcriptional regulator
1113	 71.61	0	1259679..1260386	+	235	148260134	-	Acry_1130	-	Co/Zn/Cd cation transporter-like protein
1114	 68.21	0	1260419..1261393	+	324	148260135	-	Acry_1131	-	cation diffusion facilitator family transporter
1115	 68.32	0	1261415..1262929	-	504	148260136	-	Acry_1132	-	multicopper oxidase, type 2
1116	 51.85	-2	1262999..1263322	-	107	148260137	-	Acry_1133	-	hypothetical protein
1117	 59.27	-1	1263582..1264757	+	391	148260138	-	Acry_1134	-	acyltransferase 3
1118	 60.85	-1	1265131..1265955	+	274	148260139	-	Acry_1135	-	extracellular solute-binding protein
1119	 62.28	-1	1265971..1266723	+	250	148260140	-	Acry_1136	-	polar amino acid ABC transporter, inner membrane subunit
1120	 64.05	0	1266723..1267487	+	254	148260141	-	Acry_1137	-	ABC transporter related
1121	 68.29	0	1267534..1268520	-	328	148260142	-	Acry_1138	-	inner-membrane translocator
1122	 69.75	0	1268517..1269521	-	334	148260143	-	Acry_1139	-	monosaccharide-transporting ATPase
1123	 70.16	0	1269508..1271082	-	524	148260144	-	Acry_1140	-	ABC transporter related
1124	 65.20	0	1271108..1272199	-	363	148260145	-	Acry_1141	-	ABC-type sugar transport system periplasmic component-like protein
1125	 68.67	0	1272301..1273350	-	349	148260146	-	Acry_1142	-	4-hydroxythreonine-4-phosphate dehydrogenase
1126	 72.80	0	1273484..1274608	-	374	148260147	-	Acry_1143	-	hypothetical protein
1127	 70.74	0	1274605..1275438	-	277	148260148	-	Acry_1144	-	DeoR family transcriptional regulator
1128	 70.64	0	1275490..1276470	-	326	148260149	-	Acry_1145	-	AraC family transcriptional regulator
1129	 61.37	-1	1276580..1277221	+	213	148260150	-	Acry_1146	-	metal-dependent phosphohydrolase
1130	 63.19	0	1277263..1278702	+	479	148260151	-	Acry_1147	-	catalase
1131	 69.68	0	1278571..1280031	-	486	148260152	-	Acry_1148	-	amidohydrolase
1132	 63.21	0	1280041..1281429	-	462	148260153	-	Acry_1149	-	permease for cytosine/purines, uracil, thiamine, allantoin
1133	 73.66	+1	1281469..1282011	-	180	148260154	-	Acry_1150	-	hypothetical protein
1134	 66.17	0	1282008..1283207	-	399	148260155	-	Acry_1151	-	hypothetical protein
1135	 66.95	0	1283213..1283563	-	116	148260156	-	Acry_1152	-	transthyretin
1136	 70.22	0	1283652..1284524	-	290	148260157	-	Acry_1153	-	hypothetical protein
1137	 68.84	0	1284521..1286959	-	812	148260158	-	Acry_1154	-	xanthine dehydrogenase
1138	 70.52	0	1286956..1288512	-	518	148260159	-	Acry_1155	-	molybdopterin dehydrogenase, FAD-binding
1139	 72.20	0	1288607..1289527	-	306	148260160	-	Acry_1156	-	LysR family transcriptional regulator
1140	 67.73	0	1289682..1291466	+	594	148260161	-	Acry_1157	-	glyoxylate carboligase
1141	 68.03	0	1291486..1292292	+	268	148260162	-	Acry_1158	-	hydroxypyruvate isomerase
68.17	MEAN

5.03	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.