IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.16   STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
835	 43.79	+1	1043427..1044449	-	340	126640950	-	A1S_0900	-	ATP-dependent dsDNA exonuclease
836	 40.08	0	1044860..1045333	+	157	126640951	-	A1S_0901	-	hypothetical protein
837	 42.72	0	1045401..1045709	-	102	126640952	-	A1S_0902	-	lactoylglutathione lyase-related protein
838	 33.33	-1	1046293..1046601	+	102	126640953	-	A1S_0903	-	hypothetical protein
839	 42.70	0	1046784..1047605	+	273	126640954	-	A1S_0904	-	nucleoside-diphosphate sugar epimerase
840	 43.62	0	1047597..1048568	-	323	126640955	-	A1S_0905	-	putative D-amino acid oxidase
841	 44.28	+1	1048738..1049751	-	337	126640956	-	A1S_0906	-	delta-aminolevulinic acid dehydratase
842	 44.38	+1	1049894..1050391	+	165	126640957	-	A1S_0907	-	hypothetical protein
843	 46.10	+1	1050724..1051812	+	362	126640958	-	A1S_0908	-	RND family multidrug resistance secretion protein
844	 47.26	+2	1051900..1053342	+	480	126640959	-	A1S_0909	-	MFS family transporter
845	 46.55	+1	1053823..1055631	+	602	126640960	-	A1S_0910	-	gamma-glutamyltranspeptidase precursor
846	 30.68	-2	1056402..1057004	+	200	126640961	-	A1S_0911	-	hypothetical protein
847	 34.53	-1	1057101..1057517	+	138	126640962	-	A1S_0912	-	ribosomal protein L22
848	 30.74	-2	1057745..1058632	+	295	126640963	-	A1S_0913	-	hypothetical protein
849	 28.67	-2	1058641..1059369	-	242	126640964	-	A1S_0914	-	hypothetical protein
850	 46.11	+1	1061918..1063201	-	427	126640965	-	A1S_0915	-	putative MFS transporter
851	 46.27	+1	1063476..1064240	-	254	126640966	-	A1S_0916	-	dihydrodipicolinate synthetase
852	 44.61	+1	1064674..1065498	+	274	126640967	-	A1S_0917	-	transcriptional regulator
853	 44.25	+1	1066108..1066281	+	57	126640968	-	A1S_0918	-	hypothetical protein
854	 39.90	0	1066434..1066814	+	126	126640969	-	A1S_0919	-	putative permease transmembrane protein
855	 40.23	0	1066963..1068876	+	637	126640970	-	A1S_0920	-	hypothetical protein
856	 40.48	0	1068932..1070176	-	414	126640971	-	A1S_0921	-	arginine/ornithine antiporter
857	 40.85	0	1070272..1070976	-	234	126640972	-	A1S_0922	-	putative homocysteine S-methyltransferase family protein
858	 40.89	0	1071929..1073569	-	546	162286745	-	A1S_0923	-	malate:quinone oxidoreductase
859	 44.36	+1	1074081..1074887	-	268	126640974	-	A1S_0924	-	choline dehydrogenase
860	 42.75	0	1074996..1075250	-	84	126640975	-	A1S_0925	-	choline dehydrogenase
861	 45.18	+1	1075243..1075740	-	165	126640976	-	A1S_0926	-	choline dehydrogenase
862	 45.62	+1	1075836..1077308	-	490	162286744	-	A1S_0927	-	betaine aldehyde dehydrogenase
863	 42.53	0	1077301..1077876	-	191	126640978	-	A1S_0928	-	transcriptional regulator BetI
864	 40.33	0	1078370..1079812	+	480	126640979	-	A1S_0929	-	putative choline/carnitine/betaine transporter family protein
865	 43.68	+1	1080152..1081495	+	447	126640980	-	A1S_0930	-	BCCT family high-affinity choline transporter
866	 40.64	0	1081558..1081995	+	145	126640981	-	A1S_0931	-	BCCT family high-affinity choline transporter
867	 41.08	0	1082067..1082621	+	184	126640982	-	A1S_0932	-	hypothetical protein
868	 40.91	0	1082937..1083398	+	153	126640983	-	A1S_0933	-	putative acyl-CoA thioester hydrolase
869	 41.81	0	1084334..1085206	+	290	126640984	-	A1S_0934	-	putative cobalamin synthesis protein
870	 37.24	0	1085244..1086368	-	374	126640985	-	A1S_0935	-	aerobic C4-dicarboxylate transport protein
871	 40.37	0	1086743..1087225	+	160	126640986	-	A1S_0936	-	hypothetical protein
872	 38.89	0	1087312..1087653	+	113	126640987	-	A1S_0937	-	peptidyl-prolyl cis-trans isomerase
873	 40.19	0	1087959..1089884	+	641	126640988	-	A1S_0938	-	putative lipoprotein
874	 42.67	0	1090066..1091157	+	363	126640989	-	A1S_0939	-	N-glycosyltransferase PgaC
875	 43.07	0	1091321..1091659	+	112	126640990	-	A1S_0940	-	hypothetical protein
876	 43.48	0	1091762..1092451	-	229	126640991	-	A1S_0941	-	enoyl-CoA hydratase
877	 38.99	0	1092866..1093378	+	170	126640992	-	A1S_0942	-	nucleoside/purine/pyrimidine transport protein PnuC
878	 33.67	-1	1093393..1093692	+	99	126640993	-	A1S_0943	-	hypothetical protein
879	 37.70	0	1093741..1094427	-	228	126640994	-	A1S_0944	-	putative transcriptional regulator (PcaU-like)
880	 42.37	0	1094812..1095132	+	106	126640995	-	A1S_0945	-	putative ferredoxin
881	 42.29	0	1095181..1095459	+	92	126640996	-	A1S_0946	-	hypothetical protein
882	 45.70	+1	1095614..1096543	+	309	126640997	-	A1S_0947	-	putative vanillate O-demethylase oxygenase subunit (VanA-like)
883	 44.04	+1	1096647..1097300	+	217	126640998	fabG	A1S_0948	-	3-ketoacyl-(acyl-carrier-protein) reductase
884	 42.78	0	1097522..1098241	+	239	126640999	-	A1S_0949	-	putative dioxygenase
885	 42.32	0	1098346..1098690	+	114	126641000	-	A1S_0950	-	putative ferredoxin reductase subunit of phenylpropionate dioxygenase
886	 41.71	0	1098849..1099481	+	210	126641001	-	A1S_0951	-	putative ferredoxin reductase subunit of phenylpropionate dioxygenase
887	 44.17	+1	1099656..1100735	+	359	126641002	-	A1S_0952	-	major facilitator superfamily permease
888	 45.36	+1	1100926..1101291	+	121	126641003	-	A1S_0953	-	hypothetical protein
889	 44.61	+1	1101364..1102152	+	262	126641004	-	A1S_0954	-	putative hydrolase
890	 43.50	0	1102432..1102962	+	176	126641005	-	A1S_0955	-	putative short-chain dehydrogenase
891	 44.57	+1	1102978..1103769	+	263	162286743	-	A1S_0956	-	L-aspartate dehydrogenase
892	 45.61	+1	1103963..1105249	+	428	126641007	-	A1S_0957	-	putative aldehyde dehydrogenase
893	 44.11	+1	1105417..1106928	+	503	126641008	-	A1S_0958	-	hypothetical protein
894	 37.71	0	1107345..1108280	+	311	126641009	-	A1S_0959	-	putative signal peptide
895	 40.54	0	1108270..1109463	-	397	126641010	-	A1S_0960	-	major facilitator superfamily permease
896	 42.01	0	1109989..1110357	+	122	126641011	-	A1S_0961	-	peptide deformylase 2
897	 42.94	0	1110662..1111858	+	398	126641012	-	A1S_0962	-	glutaminase
898	 41.46	0	1111825..1112439	-	204	126641013	-	A1S_0963	-	AraC family transcriptional regulator
899	 43.64	0	1112786..1113940	+	384	126641014	-	A1S_0964	-	major facilitator superfamily fosmidomycin/multidrug transport protein
900	 39.30	0	1115598..1116620	-	340	126641015	-	A1S_0965	-	mutarotase precursor
901	 39.60	0	1117394..1118143	-	249	126641016	-	A1S_0966	-	transcriptional regulatory protein
902	 44.93	+1	1118454..1119203	+	249	126641017	-	A1S_0967	-	putative short-chain type regulator dehydrogenase
903	 45.48	+1	1119354..1120580	+	408	126641018	-	A1S_0968	-	putative phthalate transporter
904	 44.40	+1	1120678..1121445	+	255	126641019	-	A1S_0969	-	transketolase
905	 44.15	+1	1121675..1122460	+	261	126641020	-	A1S_0970	-	putative transketolase beta subunit protein
906	 42.58	0	1122541..1126164	-	1207	126641021	metH	A1S_0971	-	B12-dependent methionine synthase
907	 40.62	0	1126786..1128321	+	511	126641022	-	A1S_0972	-	phosphate transporter
908	 41.78	0	1128742..1129818	+	358	126641023	-	A1S_0973	-	D-serine dehydratase
909	 44.07	+1	1129862..1130131	-	89	126641024	-	A1S_0974	-	hypothetical protein
910	 38.13	0	1130112..1131320	-	402	126641025	-	A1S_0975	-	hypothetical protein
911	 40.10	0	1132221..1133033	-	270	126641026	-	A1S_0976	-	hypothetical protein
912	 40.96	0	1133225..1134772	-	515	126641027	-	A1S_0977	-	arylsulfatase
913	 39.17	0	1135072..1135602	-	176	126641028	-	A1S_0978	-	hypothetical protein
914	 43.52	0	1136015..1136485	+	156	126641029	-	A1S_0979	-	putative membrane-bound protein in GNT I transport system (GntY)
915	 39.76	0	1136706..1138292	+	528	126641030	-	A1S_0980	-	ferric enterobactin receptor precursor
916	 35.07	-1	1138400..1138918	+	172	126641031	-	A1S_0981	-	ferric enterobactin receptor precursor
917	 35.36	-1	1138941..1139582	-	213	126641032	-	A1S_0982	-	hypothetical protein
918	 38.59	0	1139974..1140810	-	278	126641033	-	A1S_0983	-	lipase
919	 41.03	0	1141392..1141898	+	168	126641034	-	A1S_0984	-	putative carbonic anhydrase
920	 38.95	0	1141931..1142500	-	189	126641035	-	A1S_0985	-	multifunctional protein
921	 43.78	+1	1142794..1143291	+	165	126641036	-	A1S_0986	-	putative transport protein
922	 38.19	0	1143451..1145754	+	767	126641037	-	A1S_0987	-	hypothetical protein
923	 38.05	0	1145756..1146349	-	197	126641038	-	A1S_0988	-	hypothetical protein
924	 39.36	0	1146756..1147319	+	187	126641039	-	A1S_0989	-	monofunctional biosynthetic peptidoglycan transglycosylase
925	 40.75	0	1147565..1149505	+	646	126641040	-	A1S_0990	-	polyphosphate kinase
926	 34.81	-1	1149793..1150335	+	180	126641041	-	A1S_0991	-	hypothetical protein
927	 39.16	0	1150365..1151153	-	262	126641042	-	A1S_0992	-	LysR family transcriptional regulator
928	 40.86	0	1151280..1152089	-	269	126641043	-	A1S_0993	-	hypothetical protein
929	 41.48	0	1152279..1153370	-	363	126641044	-	A1S_0994	-	rubredoxin reductase
930	 41.82	0	1153553..1153717	-	54	126641045	-	A1S_0995	-	rubredoxin
931	 36.76	0	1154278..1154598	+	106	126641046	-	A1S_0996	-	hypothetical protein
932	 38.58	0	1154668..1154991	-	107	126641047	-	A1S_0997	-	hypothetical protein
933	 39.86	0	1155657..1156943	+	428	126641048	lysS	A1S_0998	-	lysyl-tRNA synthetase
934	 39.71	0	1157133..1158575	+	480	126641049	-	A1S_0999	-	putative signal peptide
40.16	MEAN

3.49	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.