IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.16   STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
35	 40.86	0	43779..44336	+	185	126640150	-	A1S_0037	-	alkali-inducible disulfide interchange protein
36	 33.33	-1	44414..44953	-	179	126640151	-	A1S_0038	-	putative transcriptional regulator
37	 39.20	0	45198..45674	-	158	126640152	-	A1S_0039	-	TetR family transcriptional regulator
38	 42.91	0	46148..47035	+	295	126640153	-	A1S_0040	-	putative oxidoreductase
39	 38.66	0	47165..48235	+	356	126640154	-	A1S_0041	-	putative linoleoyl-CoA desaturase
40	 41.90	0	48560..49084	+	174	126640155	-	A1S_0042	-	ribonuclease PH
41	 42.58	0	49608..51542	+	644	126640156	-	A1S_0043	-	hypothetical protein
42	 43.43	0	52111..52863	-	250	126640157	-	A1S_0044	-	nicotinate-nucleotide pyrophosphorylase
43	 39.78	0	53233..53697	+	154	126640158	-	A1S_0045	-	N-acetyl-anhydromuranmyl-L-alanine amidase
44	 41.03	0	54061..55320	+	419	126640159	-	A1S_0046	-	MviN family virulence factor
45	 38.02	0	55366..55941	-	191	126640160	-	A1S_0047	-	FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase)
46	 41.90	0	56112..56846	-	244	126640161	-	A1S_0048	-	FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)
47	 36.90	0	57027..58991	-	654	126640162	-	A1S_0049	-	protein tyrosine kinase
48	 40.53	0	59233..59607	-	124	126640163	-	A1S_0050	-	putative protein tyrosine phosphatase
49	 39.33	0	59666..60766	-	366	126640164	-	A1S_0051	-	putative outer membrane protein
50	 40.08	0	61385..62422	+	345	126640165	-	A1S_0052	-	WecC protein
51	 36.36	-1	62546..63403	+	285	126640166	-	A1S_0053	-	MviM protein
52	 42.83	0	63400..63978	+	192	126640167	-	A1S_0054	-	WbbJ protein
53	 38.91	0	64181..65059	+	292	126640168	-	A1S_0055	-	WecE protein
54	 32.95	-2	65130..66446	+	438	126640169	-	A1S_0056	-	O-antigen translocase
55	 33.33	-1	66590..67009	+	139	126640170	-	A1S_0057	-	capsular polysaccharide synthesis enzyme
56	 26.93	-2	67429..68349	+	306	126640171	-	A1S_0058	-	glycosyltransferase
57	 31.24	-2	70737..71693	+	318	126640172	-	A1S_0059	-	putative glycosyltransferase
58	 31.64	-2	71760..72527	+	255	126640173	-	A1S_0060	-	hypothetical protein
59	 38.25	0	72693..73160	+	155	126640174	-	A1S_0061	-	putative UDP-galactose phosphate transferase
60	 38.97	0	73263..74060	+	265	126640175	-	A1S_0062	-	putative UTP-glucose-1-phosphate uridylyltransferase
61	 40.86	0	74761..75438	+	225	126640176	-	A1S_0063	-	putative UDP-glucose 6-dehydrogenase
62	 38.21	0	75732..77105	+	457	126640177	-	A1S_0064	-	putative phosphoglucose isomerase
63	 40.14	0	77263..78114	+	283	126640178	-	A1S_0065	-	putative UDP-glucose 4-epimerase
64	 40.62	0	78158..79309	-	383	126640179	-	A1S_0066	-	hypothetical protein
65	 42.45	0	79903..81570	+	555	126640180	-	A1S_0067	-	L-lactate permease
66	 45.83	+1	81647..82342	+	231	126640181	-	A1S_0068	-	DNA-binding transcriptional repressor LldR
67	 46.87	+1	82501..83490	+	329	126640182	-	A1S_0069	-	L-lactate dehydrogenase FMN linked
68	 43.22	0	83992..85488	+	498	126640183	-	A1S_0070	-	D-lactate dehydrogenase
69	 42.55	0	85537..86751	-	404	126640184	-	A1S_0071	-	aromatic amino acid aminotransferase
70	 42.18	0	87492..87977	+	161	126640185	-	A1S_0072	-	GntR family transcriptional regulator
71	 44.89	+1	88033..88854	+	273	126640186	prpB	A1S_0073	-	2-methylisocitrate lyase
72	 47.41	+2	90283..92889	+	868	162286758	-	A1S_0076	-	aconitate hydratase
73	 30.74	-2	92999..95467	+	822	126640188	-	A1S_0077	-	hypothetical protein
74	 49.78	+2	96053..96277	+	74	126640189	-	A1S_0078	-	hypothetical protein
75	 35.00	-1	97117..97536	+	139	126640190	-	A1S_0079	-	hypothetical protein
76	 46.80	+1	98880..100082	+	400	126640191	-	A1S_0080	-	beta-ketoacyl-ACP synthase I
77	 43.30	0	100092..100643	-	183	126640192	-	A1S_0081	-	putative signal peptide
78	 32.66	-2	103903..104649	+	248	126640193	-	A1S_0086	-	hypothetical protein
79	 39.74	0	106539..107147	-	202	126640194	-	A1S_0087	-	Short-chain dehydrogenase/reductase SDR
80	 37.46	0	108043..108744	+	233	126640195	-	A1S_0088	-	hypothetical protein
81	 41.44	0	108966..109520	+	184	126640196	-	A1S_0089	-	dual specificity pseudouridine synthase
82	 38.05	0	109688..110005	+	105	126640197	-	A1S_0090	-	hypothetical protein
83	 39.90	0	110034..110414	+	126	126640198	-	A1S_0091	-	hypothetical protein
84	 42.49	0	110459..112348	-	629	126640199	-	A1S_0092	-	putative ferric siderophore receptor protein
85	 39.28	0	112703..113779	+	358	126640200	-	A1S_0093	-	hypothetical protein
86	 40.88	0	113820..114137	-	105	126640201	-	A1S_0094	-	lrp regulon transcriptional regulator (AsnC family)
87	 43.10	0	114625..115689	+	354	126640202	-	A1S_0095	-	D-amino acid dehydrogenase small subunit
88	 44.28	+1	115782..116813	+	343	126640203	-	A1S_0096	-	alanine racemase 2 PLP-binding, catabolic
89	 41.11	0	116824..117183	+	119	126640204	-	A1S_0097	-	hypothetical protein
90	 43.69	+1	117462..118784	+	440	126640205	-	A1S_0098	-	D-serine/D-alanine/glycine transport protein
91	 41.78	0	119272..120585	+	437	126640206	-	A1S_0099	-	D-serine/D-alanine/glycine transport protein
92	 45.35	+1	120643..121524	-	293	126640207	-	A1S_0100	-	LysR family transcriptional regulator
93	 45.25	+1	123404..124108	+	234	126640208	-	A1S_0103	-	3-hydroxyisobutyrate dehydrogenase
94	 45.48	+1	124424..125839	+	471	126640209	-	A1S_0104	-	putative acetyl-CoA synthetase/AMP-(fatty) acid ligase
95	 45.51	+1	125977..126978	+	333	126640210	-	A1S_0105	-	putative acyl-CoA dehydrogenase
96	 42.33	0	127207..127773	+	188	126640211	-	A1S_0106	-	putative enoyl-CoA hydratase/isomerase
97	 42.37	0	127882..128811	+	309	126640212	-	A1S_0107	-	putative enoyl-CoA hydratase/isomerase family protein
98	 43.61	0	129000..130283	+	427	126640213	-	A1S_0108	-	major facilitator superfamily metabolite/H(+) symporter
99	 44.36	+1	130376..130765	-	129	126640214	-	A1S_0109	-	homoserine lactone synthase
100	 36.89	0	131006..131371	-	121	126640215	-	A1S_0110	-	hypothetical protein
101	 38.86	0	132302..132898	+	198	126640216	-	A1S_0111	-	eR transcriptional regulator
102	 43.30	0	133680..135404	+	574	126640217	-	A1S_0112	-	Acyl-CoA synthetase/AMP-acid ligases II
103	 45.82	+1	135605..137230	+	541	126640218	-	A1S_0113	-	Acyl-CoA dehydrogenase
104	 41.38	0	137227..137487	+	86	126640219	-	A1S_0114	-	Acyl carrier protein
105	 45.06	+1	137598..141443	+	1281	126640220	-	A1S_0115	-	amino acid adenylation
106	 43.70	+1	141648..145118	+	1156	126640221	-	A1S_0116	-	RND superfamily transporter
107	 42.21	0	145196..146389	+	397	126640222	-	A1S_0117	-	hypothetical protein
108	 42.15	0	146563..148308	+	581	126640223	-	A1S_0118	-	hypothetical protein
109	 34.51	-1	148469..149065	+	198	126640224	-	A1S_0119	-	phosphopantethiene-protein transferase
110	 42.72	0	149587..149895	+	102	126640225	-	A1S_0122	-	putative morphogenic pathway activator (BolA)
111	 38.61	0	149940..150299	+	119	126640226	-	A1S_0123	-	hypothetical protein
112	 39.23	0	150592..151218	+	208	126640227	-	A1S_0124	-	chromatin partitioning ATPase
113	 44.87	+1	151226..151615	+	129	126640228	-	A1S_0125	-	hypothetical protein
114	 38.49	0	151957..152421	+	154	126640229	-	A1S_0126	-	hypothetical protein
115	 41.04	0	152429..152947	-	172	126640230	-	A1S_0127	-	putative integral membrane protein (DedA)
116	 43.06	0	153414..153701	+	95	126640231	-	A1S_0128	-	hypothetical protein
117	 40.45	0	153760..154926	-	388	126640232	-	A1S_0129	-	hypothetical protein
118	 43.35	0	155476..156933	+	485	126640233	guaA	A1S_0130	-	bifunctional GMP synthase/glutamine amidotransferase protein
119	 36.68	0	157131..157787	+	218	126640234	-	A1S_0131	-	putative adenylyltransferase
120	 37.76	0	158105..158533	+	142	126640235	-	A1S_0132	-	putative transcriptional regulator
121	 34.97	-1	158594..158899	+	101	126640236	-	A1S_0133	-	hypothetical protein
122	 42.57	0	159203..160003	+	266	126640237	-	A1S_0134	-	pirin-related protein
123	 35.58	-1	160141..160407	+	88	126640238	-	A1S_0135	-	hypothetical protein
124	 38.27	0	160519..161187	+	222	126640239	-	A1S_0136	-	glutathione S-transferase
125	 41.37	0	161231..161740	-	169	126640240	-	A1S_0137	-	hypothetical protein
126	 41.10	0	164588..165991	+	467	126640241	-	A1S_0140	-	malate dehydrogenase
127	 42.53	0	166037..166699	-	220	126640242	-	A1S_0141	-	putative dyp-type peroxidase
128	 39.01	0	167197..167742	+	181	126640243	-	A1S_0142	-	homoserine/homoserine lactone efflux protein
129	 41.18	0	167744..168469	-	241	126640244	-	A1S_0143	-	high affinity Zn transport protein
130	 44.27	+1	168557..169114	-	185	126640245	-	A1S_0144	-	high affinity Zn transport protein
131	 43.44	0	169318..169782	-	154	126640246	-	A1S_0145	-	Zn transport system transcriptional repressor
132	 39.05	0	170153..170782	+	209	126640247	-	A1S_0146	-	high affinity Zn transport protein
133	 44.44	+1	171018..171350	+	110	126640248	-	A1S_0147	-	ATP synthase protein I
134	 42.57	0	171530..172330	+	266	126640249	-	A1S_0148	-	F0F1 ATP synthase subunit A
40.16	MEAN

3.49	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.