IslandPathversion 1.0

IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.16 STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
737	 38.36	0	943599..944075	+	158	126640852	-	A1S_0796	-	GntR family transcriptional regulator
738	 40.44	0	944227..947535	+	1102	126640853	-	A1S_0797	-	putative chromosome segregation ATPases
739	 41.95	0	947600..948574	+	324	126640854	-	A1S_0798	-	putative cell division protein (ZipA-like)
740	 43.23	0	948696..950705	+	669	126640855	-	A1S_0799	-	DNA ligase
741	 37.63	0	950958..951422	+	154	126640856	-	A1S_0800	-	bacterioferritin
742	 43.15	0	951717..952307	+	196	126640857	-	A1S_0801	-	putative transport protein (permease)
743	 42.97	0	952393..952911	+	172	126640858	-	A1S_0802	-	putative transport protein (permease)
744	 38.57	0	952979..954142	-	387	126640859	-	A1S_0803	-	trehalose-6-phosphate synthase
745	 27.52	-2	954397..955032	-	211	126640860	-	A1S_0804	-	trehalose-6-phosphate phophatase
746	 36.01	-1	955779..956339	+	186	126640861	-	A1S_0805	-	putative hydrolase biotin biosynthesis (BioH)
747	 41.27	0	956565..957710	+	381	126640862	-	A1S_0806	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
748	 38.62	0	957829..958869	+	346	126640863	-	A1S_0807	-	8-amino-7-oxononanoate synthase
749	 38.67	0	958998..959615	+	205	126640864	-	A1S_0808	-	putative biotin biosynthesis protein (BioC)
750	 38.10	0	959790..960272	+	160	126640865	-	A1S_0809	-	dethiobiotin synthetase x
751	 43.69	+1	960325..961164	-	279	126640866	-	A1S_0810	-	putative ribosomal large subunit pseudouridine synthase B
752	 41.21	0	961290..961886	-	198	126640867	-	A1S_0811	-	hypothetical protein
753	 38.65	0	961883..962446	-	187	126640868	-	A1S_0812	-	hypothetical protein
754	 39.66	0	962903..963376	-	157	126640869	-	A1S_0813	-	hypothetical protein
755	 39.93	0	963610..964185	-	191	126640870	-	A1S_0814	-	hypothetical protein
756	 40.35	0	964531..964929	+	132	126640871	-	A1S_0815	-	hypothetical protein
757	 48.39	+2	965004..965189	+	61	126640872	-	A1S_0816	-	50S ribosomal protein L32
758	 41.75	0	965426..966328	+	300	126640873	-	A1S_0817	-	hypothetical protein
759	 41.04	0	966502..967059	+	185	126640874	-	A1S_0818	-	hypothetical protein
760	 37.30	0	967129..967380	+	83	126640875	-	A1S_0819	-	acyl carrier protein (ACP)
761	 35.47	-1	967718..968044	+	108	126640876	-	A1S_0820	-	putative peptidoglycan-binding LysM
762	 39.70	0	968090..968623	-	177	126640877	-	A1S_0821	-	hypothetical protein
763	 37.39	0	969039..969629	+	196	126640878	-	A1S_0822	-	putative hydrolase
764	 41.85	0	969695..970246	-	183	126640879	-	A1S_0823	-	34 dihydroxy-2-butanone-4-phosphate synthase
765	 36.75	0	972615..973112	+	165	126640880	-	A1S_0824	-	hypothetical protein
766	 42.81	0	973168..973452	-	94	126640881	-	A1S_0825	-	aspartate 1-decarboxylase precursor
767	 43.40	0	973680..973967	-	95	126640882	-	A1S_0826	-	peptidyl-tRNA hydrolase
768	 41.48	0	974101..974235	-	44	126640883	-	A1S_0827	-	peptidyl-tRNA hydrolase
769	 43.59	0	974283..974594	-	103	126640884	-	A1S_0828	-	50S ribosomal protein L25
770	 43.22	0	974679..975629	-	316	126640885	-	A1S_0829	-	ribose-phosphate pyrophosphokinase
771	 37.80	0	976104..976820	-	238	126640886	-	A1S_0834	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
772	 39.21	0	976956..977534	-	192	126640887	-	A1S_0835	-	outer-membrane lipoprotein precursor
773	 38.22	0	977539..979176	-	545	126640888	-	A1S_0836	-	putative signal peptide
774	 42.41	0	979508..980620	+	370	126640889	-	A1S_0837	-	glutamyl tRNA reductase
775	 39.01	0	980617..981972	-	451	126640890	-	A1S_0838	-	DNA primase
776	 38.15	0	981914..982411	-	165	126640891	-	A1S_0839	-	DNA primase
777	 41.64	0	982642..983736	-	364	126640892	-	A1S_0840	-	putative competence protein (ComL)
778	 40.82	0	984042..984923	+	293	126640893	-	A1S_0841	-	ribosomal large subunit pseudouridine synthase D
779	 41.87	0	984934..985671	+	245	126640894	-	A1S_0842	-	hypothetical protein
780	 39.91	0	985988..986443	+	151	126640895	-	A1S_0843	-	putative flavodoxin or tryptophan repressor binding protein
781	 39.20	0	986485..986859	-	124	126640896	smpB	A1S_0844	-	SsrA-binding protein
782	 37.25	0	987181..987588	+	135	126640897	-	A1S_0845	-	phosphopantetheine adenylyltransferase
783	 36.53	-1	988679..989710	+	343	126640898	-	A1S_0847	-	putative signal peptide
784	 39.83	0	989760..990452	-	230	126640899	-	A1S_0848	-	transcriptional regulator
785	 44.34	+1	991012..991956	+	314	126640900	-	A1S_0849	-	tartrate dehydrogenase
786	 41.63	0	992112..993629	+	505	126640901	-	A1S_0850	-	putative transporter
787	 43.66	+1	993764..994615	+	283	126640902	-	A1S_0851	-	putative lipase
788	 42.13	0	994910..995773	+	287	126640903	-	A1S_0852	-	dioxygenase alpha subunit
789	 44.90	+1	995973..996629	+	218	126640904	-	A1S_0853	-	succinate-semialdehyde dehydrogenase
790	 40.95	0	996596..997291	+	231	126640905	-	A1S_0854	-	NAD-dependent succinate aldehyde dehydrogenases
791	 39.58	0	997480..998295	+	271	126640906	-	A1S_0855	-	dioxygenase beta subunit
792	 34.00	-1	998573..999466	-	297	126640907	-	A1S_0857	-	hypothetical protein
793	 41.35	0	999594..999992	-	132	126640908	-	A1S_0858	-	putative glutamine-dependent NAD(+) synthetase (NAD(+) synthase
794	 38.72	0	1000052..1001146	-	364	126640909	-	A1S_0859	-	putative glutamine-dependent NAD(+) synthetase (NAD(+) synthase
795	 36.79	0	1001603..1002007	-	134	126640910	-	A1S_0860	-	hypothetical protein
796	 40.43	0	1002254..1002958	-	234	126640911	-	A1S_0861	-	Pirin
797	 36.84	0	1003285..1003626	-	113	126640912	-	A1S_0862	-	hypothetical protein
798	 42.91	0	1003756..1004580	-	274	126640913	-	A1S_0863	-	beta-ketoacyl-ACP synthase I
799	 38.82	0	1004724..1004960	-	78	126640914	-	A1S_0864	-	beta-ketoacyl-ACP synthase I
800	 36.94	0	1005497..1006606	+	369	126640915	-	A1S_0865	-	hypothetical protein
801	 43.47	0	1006807..1007181	+	124	162286748	rpsL	A1S_0866	-	30S ribosomal protein S12
802	 44.59	+1	1007341..1007811	+	156	162286747	-	A1S_0867	-	30S ribosomal protein S7
803	 43.07	0	1008137..1010128	+	663	126640918	-	A1S_0868	-	elongation factor G
804	 44.73	+1	1010223..1011371	+	382	162286746	-	A1S_0869	-	elongation factor Tu
805	 37.26	0	1011668..1012456	+	262	126640920	-	A1S_0870	-	putative metal-dependent hydrolase
806	 37.32	0	1012816..1013568	+	250	126640921	-	A1S_0871	-	putative metal-dependent hydrolase
807	 36.04	-1	1013689..1014132	+	147	126640922	-	A1S_0872	-	ribosomal-protein-alanine acetyltransferase
808	 38.61	0	1014177..1014896	-	239	126640923	-	A1S_0873	-	arginyl-tRNA-protein transferase
809	 36.57	-1	1015011..1015505	-	164	126640924	aat	A1S_0874	-	leucyl/phenylalanyl-tRNA--protein transferase
810	 40.21	0	1015863..1016618	-	251	126640925	-	A1S_0875	-	thioredoxin reductase
811	 42.15	0	1017152..1020112	+	986	126640926	-	A1S_0876	-	putative cell division protein (FstK)
812	 37.04	0	1020262..1020882	+	206	126640927	-	A1S_0877	-	threonine efflux system
813	 42.01	0	1020925..1021212	-	95	126640928	-	A1S_0878	-	hypothetical protein
814	 38.46	0	1021296..1021568	-	90	126640929	-	A1S_0879	-	cell division topological specificity factor
815	 41.44	0	1021571..1022236	-	221	126640930	-	A1S_0880	-	minC activating cell division inhibitor a membrane ATPase
816	 41.57	0	1022454..1022987	-	177	126640931	-	A1S_0881	-	cell division inhibitor
817	 38.45	0	1023297..1024253	-	318	126640932	-	A1S_0882	-	hypothetical protein
818	 40.00	0	1024360..1025019	-	219	126640933	-	A1S_0883	-	putative phospholipid/glycerol acyltransferase
819	 42.05	0	1025531..1026184	+	217	126640934	-	A1S_0884	-	putative outer membrane protein
820	 39.37	0	1026545..1028416	+	623	126640935	-	A1S_0885	-	ATP-dependent DNA helicase
821	 42.76	0	1028597..1028893	+	98	126640936	-	A1S_0886	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
822	 39.18	0	1029348..1030511	+	387	126640937	-	A1S_0887	-	phosphomannomutase
823	 41.51	0	1030640..1031434	+	264	126640938	-	A1S_0888	-	acetylglutamate kinase
824	 36.94	0	1031534..1032337	+	267	126640939	-	A1S_0889	-	hypothetical protein
825	 36.28	-1	1032446..1033294	+	282	126640940	-	A1S_0890	-	putative glutamine amidotransferase
826	 32.24	-2	1033547..1034002	+	151	126640941	-	A1S_0891	-	hypothetical protein
827	 41.18	0	1034140..1035222	+	360	126640942	-	A1S_0892	-	hypothetical protein
828	 42.39	0	1035303..1035545	+	80	126640943	-	A1S_0893	-	hypothetical protein
829	 41.95	0	1035600..1035866	-	88	126640944	-	A1S_0894	-	outer membrane lipoprotein
830	 36.69	0	1036131..1036547	+	138	126640945	-	A1S_0895	-	ferric uptake regulator
831	 40.94	0	1036617..1037654	-	345	126640946	-	A1S_0896	-	twitching motility protein
832	 44.61	+1	1037763..1038800	-	345	126640947	-	A1S_0897	-	twitching motility protein
833	 42.11	0	1039062..1039619	+	185	126640948	-	A1S_0898	-	hypothetical protein
834	 41.07	0	1039821..1043270	-	1149	126640949	-	A1S_0899	-	ATP-dependent dsDNA exonuclease
835	 43.79	+1	1043427..1044449	-	340	126640950	-	A1S_0900	-	ATP-dependent dsDNA exonuclease
836	 40.08	0	1044860..1045333	+	157	126640951	-	A1S_0901	-	hypothetical protein
40.16	MEAN

3.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.