IslandPathversion 1.0

IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.16 STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
707	 39.61	0	906565..907983	+	472	126640822	-	A1S_0764	-	NADH dehydrogenase I chain N
708	 39.96	0	908192..908719	+	175	126640823	-	A1S_0765	-	uracil phosphoribosyltransferase
709	 35.03	-1	908836..909129	+	97	126640824	-	A1S_0766	-	putative cold shock protein
710	 42.24	0	909395..909742	+	115	126640825	-	A1S_0767	-	Excalibur
711	 40.87	0	909754..910536	-	260	126640826	-	A1S_0768	-	LysR family transcriptional regulator
712	 43.09	0	910803..911489	+	228	126640827	-	A1S_0769	-	ferredoxin--NADP+ reductase
713	 40.28	0	911540..911899	-	119	126640828	-	A1S_0770	-	hypothetical protein
714	 39.96	0	912830..914383	+	517	126640829	-	A1S_0771	-	hypothetical protein
715	 39.83	0	914695..915894	-	399	126640830	-	A1S_0772	-	putative oxidoreductase
716	 39.39	0	916012..916572	-	186	126640831	-	A1S_0773	-	putative D-cysteine desulfhydrase (DcyD)
717	 41.82	0	916957..917958	-	333	126640832	-	A1S_0774	-	RND efflux transporter
718	 41.29	0	918125..919519	-	464	126640833	-	A1S_0775	-	MFS family transporter
719	 39.74	0	919765..920232	-	155	126640834	-	A1S_0776	-	TetR family transcriptional regulator
720	 37.31	0	920558..921136	+	192	126640835	-	A1S_0777	-	putative threonine efflux protein (RhtC)
721	 40.85	0	921615..923624	-	669	126640836	metG	A1S_0778	-	methionyl-tRNA synthetase
722	 36.60	-1	924036..924464	+	142	126640837	-	A1S_0779	-	hypothetical protein
723	 42.22	0	924748..925839	+	363	126640838	-	A1S_0780	-	putative ATP-binding protein
724	 40.00	0	926153..926857	+	234	126640839	-	A1S_0781	-	putative MTA/SAH nucleosidase
725	 36.09	-1	926888..927394	-	168	126640840	-	A1S_0782	-	hypothetical protein
726	 34.03	-1	927976..928404	+	142	126640841	-	A1S_0783	-	hypothetical protein
727	 38.92	0	928552..929088	+	178	126640842	dcd	A1S_0784	-	deoxycytidine triphosphate deaminase
728	 36.77	0	929475..930725	+	416	126640843	-	A1S_0785	-	hypothetical protein
729	 38.58	0	931106..932974	+	622	126640844	-	A1S_0786	-	putative signal peptide
730	 38.31	0	933113..933715	+	200	126640845	-	A1S_0787	-	putative signal peptide
731	 39.12	0	933808..936159	+	783	126640846	-	A1S_0788	-	hypothetical protein
732	 42.08	0	937354..938073	-	239	126640847	-	A1S_0789	-	hypothetical protein
733	 37.59	0	938383..939111	-	242	126640848	-	A1S_0790	-	hypothetical protein
734	 40.53	0	940794..941279	-	161	126640849	-	A1S_0793	-	putative transcriptional regulator
735	 41.27	0	941544..942236	-	230	126640850	-	A1S_0794	-	hypothetical protein
736	 42.64	0	942465..943130	+	221	126640851	-	A1S_0795	-	hypothetical protein
737	 38.36	0	943599..944075	+	158	126640852	-	A1S_0796	-	GntR family transcriptional regulator
738	 40.44	0	944227..947535	+	1102	126640853	-	A1S_0797	-	putative chromosome segregation ATPases
739	 41.95	0	947600..948574	+	324	126640854	-	A1S_0798	-	putative cell division protein (ZipA-like)
740	 43.23	0	948696..950705	+	669	126640855	-	A1S_0799	-	DNA ligase
741	 37.63	0	950958..951422	+	154	126640856	-	A1S_0800	-	bacterioferritin
742	 43.15	0	951717..952307	+	196	126640857	-	A1S_0801	-	putative transport protein (permease)
743	 42.97	0	952393..952911	+	172	126640858	-	A1S_0802	-	putative transport protein (permease)
744	 38.57	0	952979..954142	-	387	126640859	-	A1S_0803	-	trehalose-6-phosphate synthase
745	 27.52	-2	954397..955032	-	211	126640860	-	A1S_0804	-	trehalose-6-phosphate phophatase
746	 36.01	-1	955779..956339	+	186	126640861	-	A1S_0805	-	putative hydrolase biotin biosynthesis (BioH)
747	 41.27	0	956565..957710	+	381	126640862	-	A1S_0806	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
748	 38.62	0	957829..958869	+	346	126640863	-	A1S_0807	-	8-amino-7-oxononanoate synthase
749	 38.67	0	958998..959615	+	205	126640864	-	A1S_0808	-	putative biotin biosynthesis protein (BioC)
750	 38.10	0	959790..960272	+	160	126640865	-	A1S_0809	-	dethiobiotin synthetase x
751	 43.69	+1	960325..961164	-	279	126640866	-	A1S_0810	-	putative ribosomal large subunit pseudouridine synthase B
752	 41.21	0	961290..961886	-	198	126640867	-	A1S_0811	-	hypothetical protein
753	 38.65	0	961883..962446	-	187	126640868	-	A1S_0812	-	hypothetical protein
754	 39.66	0	962903..963376	-	157	126640869	-	A1S_0813	-	hypothetical protein
755	 39.93	0	963610..964185	-	191	126640870	-	A1S_0814	-	hypothetical protein
756	 40.35	0	964531..964929	+	132	126640871	-	A1S_0815	-	hypothetical protein
757	 48.39	+2	965004..965189	+	61	126640872	-	A1S_0816	-	50S ribosomal protein L32
758	 41.75	0	965426..966328	+	300	126640873	-	A1S_0817	-	hypothetical protein
759	 41.04	0	966502..967059	+	185	126640874	-	A1S_0818	-	hypothetical protein
760	 37.30	0	967129..967380	+	83	126640875	-	A1S_0819	-	acyl carrier protein (ACP)
761	 35.47	-1	967718..968044	+	108	126640876	-	A1S_0820	-	putative peptidoglycan-binding LysM
762	 39.70	0	968090..968623	-	177	126640877	-	A1S_0821	-	hypothetical protein
763	 37.39	0	969039..969629	+	196	126640878	-	A1S_0822	-	putative hydrolase
764	 41.85	0	969695..970246	-	183	126640879	-	A1S_0823	-	34 dihydroxy-2-butanone-4-phosphate synthase
765	 36.75	0	972615..973112	+	165	126640880	-	A1S_0824	-	hypothetical protein
766	 42.81	0	973168..973452	-	94	126640881	-	A1S_0825	-	aspartate 1-decarboxylase precursor
767	 43.40	0	973680..973967	-	95	126640882	-	A1S_0826	-	peptidyl-tRNA hydrolase
768	 41.48	0	974101..974235	-	44	126640883	-	A1S_0827	-	peptidyl-tRNA hydrolase
769	 43.59	0	974283..974594	-	103	126640884	-	A1S_0828	-	50S ribosomal protein L25
770	 43.22	0	974679..975629	-	316	126640885	-	A1S_0829	-	ribose-phosphate pyrophosphokinase
771	 37.80	0	976104..976820	-	238	126640886	-	A1S_0834	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
772	 39.21	0	976956..977534	-	192	126640887	-	A1S_0835	-	outer-membrane lipoprotein precursor
773	 38.22	0	977539..979176	-	545	126640888	-	A1S_0836	-	putative signal peptide
774	 42.41	0	979508..980620	+	370	126640889	-	A1S_0837	-	glutamyl tRNA reductase
775	 39.01	0	980617..981972	-	451	126640890	-	A1S_0838	-	DNA primase
776	 38.15	0	981914..982411	-	165	126640891	-	A1S_0839	-	DNA primase
777	 41.64	0	982642..983736	-	364	126640892	-	A1S_0840	-	putative competence protein (ComL)
778	 40.82	0	984042..984923	+	293	126640893	-	A1S_0841	-	ribosomal large subunit pseudouridine synthase D
779	 41.87	0	984934..985671	+	245	126640894	-	A1S_0842	-	hypothetical protein
780	 39.91	0	985988..986443	+	151	126640895	-	A1S_0843	-	putative flavodoxin or tryptophan repressor binding protein
781	 39.20	0	986485..986859	-	124	126640896	smpB	A1S_0844	-	SsrA-binding protein
782	 37.25	0	987181..987588	+	135	126640897	-	A1S_0845	-	phosphopantetheine adenylyltransferase
783	 36.53	-1	988679..989710	+	343	126640898	-	A1S_0847	-	putative signal peptide
784	 39.83	0	989760..990452	-	230	126640899	-	A1S_0848	-	transcriptional regulator
785	 44.34	+1	991012..991956	+	314	126640900	-	A1S_0849	-	tartrate dehydrogenase
786	 41.63	0	992112..993629	+	505	126640901	-	A1S_0850	-	putative transporter
787	 43.66	+1	993764..994615	+	283	126640902	-	A1S_0851	-	putative lipase
788	 42.13	0	994910..995773	+	287	126640903	-	A1S_0852	-	dioxygenase alpha subunit
789	 44.90	+1	995973..996629	+	218	126640904	-	A1S_0853	-	succinate-semialdehyde dehydrogenase
790	 40.95	0	996596..997291	+	231	126640905	-	A1S_0854	-	NAD-dependent succinate aldehyde dehydrogenases
791	 39.58	0	997480..998295	+	271	126640906	-	A1S_0855	-	dioxygenase beta subunit
792	 34.00	-1	998573..999466	-	297	126640907	-	A1S_0857	-	hypothetical protein
793	 41.35	0	999594..999992	-	132	126640908	-	A1S_0858	-	putative glutamine-dependent NAD(+) synthetase (NAD(+) synthase
794	 38.72	0	1000052..1001146	-	364	126640909	-	A1S_0859	-	putative glutamine-dependent NAD(+) synthetase (NAD(+) synthase
795	 36.79	0	1001603..1002007	-	134	126640910	-	A1S_0860	-	hypothetical protein
796	 40.43	0	1002254..1002958	-	234	126640911	-	A1S_0861	-	Pirin
797	 36.84	0	1003285..1003626	-	113	126640912	-	A1S_0862	-	hypothetical protein
798	 42.91	0	1003756..1004580	-	274	126640913	-	A1S_0863	-	beta-ketoacyl-ACP synthase I
799	 38.82	0	1004724..1004960	-	78	126640914	-	A1S_0864	-	beta-ketoacyl-ACP synthase I
800	 36.94	0	1005497..1006606	+	369	126640915	-	A1S_0865	-	hypothetical protein
801	 43.47	0	1006807..1007181	+	124	162286748	rpsL	A1S_0866	-	30S ribosomal protein S12
802	 44.59	+1	1007341..1007811	+	156	162286747	-	A1S_0867	-	30S ribosomal protein S7
803	 43.07	0	1008137..1010128	+	663	126640918	-	A1S_0868	-	elongation factor G
804	 44.73	+1	1010223..1011371	+	382	162286746	-	A1S_0869	-	elongation factor Tu
805	 37.26	0	1011668..1012456	+	262	126640920	-	A1S_0870	-	putative metal-dependent hydrolase
806	 37.32	0	1012816..1013568	+	250	126640921	-	A1S_0871	-	putative metal-dependent hydrolase
40.16	MEAN

3.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.