IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.16   STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
665	 42.08	0	851382..852581	+	399	126640780	-	A1S_0722	-	major facilitator superfamily cis,cis-muconate transporter
666	 42.28	0	852769..853863	+	364	126640781	-	A1S_0723	-	L-carnitine dehydrogenase
667	 41.03	0	853968..855137	-	389	126640782	-	A1S_0724	-	citrate utilization protein B
668	 44.39	+1	855091..856347	-	418	126640783	-	A1S_0725	-	tricarballylate dehydrogenase
669	 44.06	+1	856601..857374	-	257	126640784	-	A1S_0726	-	LysR family transcriptional regulator
670	 41.41	0	857662..858342	-	226	126640785	-	A1S_0727	-	putative substrate-binding protein
671	 44.50	+1	858550..859704	-	384	126640786	-	A1S_0728	-	major facilitator superfamily citrate-proton symporter
672	 42.72	0	860139..860990	-	283	126640787	-	A1S_0729	-	LysR family transcriptional regulator
673	 40.78	0	861626..862753	+	375	126640788	-	A1S_0730	-	putative long-chain fatty acid transport protein
674	 42.91	0	862985..864154	+	389	126640789	-	A1S_0731	-	amidohydrolase
675	 38.87	0	864213..865187	-	324	126640790	-	A1S_0732	-	AraC family transcriptional regulator
676	 40.63	0	865571..866461	+	296	126640791	-	A1S_0733	-	hypothetical protein
677	 36.64	-1	866563..866985	-	140	126640792	-	A1S_0734	-	transporter
678	 39.25	0	867607..868299	+	230	126640793	-	A1S_0735	-	LysR family transcriptional regulator
679	 40.02	0	868666..869652	+	328	126640794	-	A1S_0736	-	hypothetical protein
680	 44.32	+1	869881..870717	+	278	126640795	-	A1S_0737	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
681	 42.93	0	870978..871394	+	138	126640796	-	A1S_0738	-	putative flavoprotein oxidoreductase
682	 39.31	0	872488..873039	+	183	126640797	-	A1S_0739	-	putative transcriptional regulator
683	 29.56	-2	873036..874253	-	405	126640798	-	A1S_0740	-	putative phage related protein
684	 39.56	0	874446..874718	-	90	126640799	-	A1S_0741	-	hypothetical protein
685	 37.09	0	875602..878292	+	896	126640800	-	A1S_0742	-	iron-regulated protein
686	 39.86	0	878374..878664	-	96	126640801	-	A1S_0743	-	hypothetical protein
687	 41.03	0	878957..879424	+	155	126640802	-	A1S_0744	-	TetR family transcriptional regulator
688	 44.55	+1	879534..882155	-	873	126640803	-	A1S_0745	-	hypothetical protein
689	 44.11	+1	883242..884327	-	361	126640804	-	A1S_0746	-	ribonucleotide-diphosphate reductase subunit beta
690	 42.89	0	884853..887510	-	885	126640805	-	A1S_0747	-	ribonucleotide-diphosphate reductase subunit alpha
691	 42.22	0	888397..888936	+	179	126640806	-	A1S_0748	-	NarL family two-component response regulator
692	 41.46	0	889191..890618	+	475	126640807	-	A1S_0749	-	BfmS
693	 36.33	-1	890641..890940	-	99	126640808	-	A1S_0750	-	hypothetical protein
694	 38.68	0	891087..892058	-	323	126640809	-	A1S_0751	-	diguanylate cyclase
695	 46.01	+1	892935..893486	+	183	126640810	-	A1S_0752	-	NADH dehydrogenase I chain A
696	 43.33	0	893601..894170	+	189	126640811	-	A1S_0753	-	NADH dehydrogenase I chain B
697	 44.46	+1	894254..896041	+	595	162286749	-	A1S_0754	-	bifunctional NADH:ubiquinone oxidoreductase subunit C/D
698	 41.89	0	896226..896564	+	112	126640813	-	A1S_0755	-	NADH dehydrogenase I chain E
699	 45.45	+1	896708..897895	+	395	126640814	-	A1S_0756	-	NADH dehydrogenase I chain F
700	 43.76	+1	898099..900591	+	830	126640815	-	A1S_0757	-	NADH dehydrogenase subunit G
701	 43.19	0	900709..901611	+	300	126640816	-	A1S_0758	-	NADH dehydrogenase subunit H
702	 44.04	+1	901678..902172	+	164	126640817	-	A1S_0759	-	NADH dehydrogenase subunit I
703	 44.27	+1	902298..902690	+	130	126640818	-	A1S_0760	-	NADH dehydrogenase I chain J
704	 47.26	+2	902762..902998	+	78	126640819	-	A1S_0761	-	NADH dehydrogenase I chain K
705	 41.59	0	903142..904884	+	580	126640820	-	A1S_0762	-	NADH dehydrogenase subunit L
706	 41.63	0	905003..906484	+	493	126640821	-	A1S_0763	-	NADH dehydrogenase subunit M
707	 39.61	0	906565..907983	+	472	126640822	-	A1S_0764	-	NADH dehydrogenase I chain N
708	 39.96	0	908192..908719	+	175	126640823	-	A1S_0765	-	uracil phosphoribosyltransferase
709	 35.03	-1	908836..909129	+	97	126640824	-	A1S_0766	-	putative cold shock protein
710	 42.24	0	909395..909742	+	115	126640825	-	A1S_0767	-	Excalibur
711	 40.87	0	909754..910536	-	260	126640826	-	A1S_0768	-	LysR family transcriptional regulator
712	 43.09	0	910803..911489	+	228	126640827	-	A1S_0769	-	ferredoxin--NADP+ reductase
713	 40.28	0	911540..911899	-	119	126640828	-	A1S_0770	-	hypothetical protein
714	 39.96	0	912830..914383	+	517	126640829	-	A1S_0771	-	hypothetical protein
715	 39.83	0	914695..915894	-	399	126640830	-	A1S_0772	-	putative oxidoreductase
716	 39.39	0	916012..916572	-	186	126640831	-	A1S_0773	-	putative D-cysteine desulfhydrase (DcyD)
717	 41.82	0	916957..917958	-	333	126640832	-	A1S_0774	-	RND efflux transporter
718	 41.29	0	918125..919519	-	464	126640833	-	A1S_0775	-	MFS family transporter
719	 39.74	0	919765..920232	-	155	126640834	-	A1S_0776	-	TetR family transcriptional regulator
720	 37.31	0	920558..921136	+	192	126640835	-	A1S_0777	-	putative threonine efflux protein (RhtC)
721	 40.85	0	921615..923624	-	669	126640836	metG	A1S_0778	-	methionyl-tRNA synthetase
722	 36.60	-1	924036..924464	+	142	126640837	-	A1S_0779	-	hypothetical protein
723	 42.22	0	924748..925839	+	363	126640838	-	A1S_0780	-	putative ATP-binding protein
724	 40.00	0	926153..926857	+	234	126640839	-	A1S_0781	-	putative MTA/SAH nucleosidase
725	 36.09	-1	926888..927394	-	168	126640840	-	A1S_0782	-	hypothetical protein
726	 34.03	-1	927976..928404	+	142	126640841	-	A1S_0783	-	hypothetical protein
727	 38.92	0	928552..929088	+	178	126640842	dcd	A1S_0784	-	deoxycytidine triphosphate deaminase
728	 36.77	0	929475..930725	+	416	126640843	-	A1S_0785	-	hypothetical protein
729	 38.58	0	931106..932974	+	622	126640844	-	A1S_0786	-	putative signal peptide
730	 38.31	0	933113..933715	+	200	126640845	-	A1S_0787	-	putative signal peptide
731	 39.12	0	933808..936159	+	783	126640846	-	A1S_0788	-	hypothetical protein
732	 42.08	0	937354..938073	-	239	126640847	-	A1S_0789	-	hypothetical protein
733	 37.59	0	938383..939111	-	242	126640848	-	A1S_0790	-	hypothetical protein
734	 40.53	0	940794..941279	-	161	126640849	-	A1S_0793	-	putative transcriptional regulator
735	 41.27	0	941544..942236	-	230	126640850	-	A1S_0794	-	hypothetical protein
736	 42.64	0	942465..943130	+	221	126640851	-	A1S_0795	-	hypothetical protein
737	 38.36	0	943599..944075	+	158	126640852	-	A1S_0796	-	GntR family transcriptional regulator
738	 40.44	0	944227..947535	+	1102	126640853	-	A1S_0797	-	putative chromosome segregation ATPases
739	 41.95	0	947600..948574	+	324	126640854	-	A1S_0798	-	putative cell division protein (ZipA-like)
740	 43.23	0	948696..950705	+	669	126640855	-	A1S_0799	-	DNA ligase
741	 37.63	0	950958..951422	+	154	126640856	-	A1S_0800	-	bacterioferritin
742	 43.15	0	951717..952307	+	196	126640857	-	A1S_0801	-	putative transport protein (permease)
743	 42.97	0	952393..952911	+	172	126640858	-	A1S_0802	-	putative transport protein (permease)
744	 38.57	0	952979..954142	-	387	126640859	-	A1S_0803	-	trehalose-6-phosphate synthase
745	 27.52	-2	954397..955032	-	211	126640860	-	A1S_0804	-	trehalose-6-phosphate phophatase
746	 36.01	-1	955779..956339	+	186	126640861	-	A1S_0805	-	putative hydrolase biotin biosynthesis (BioH)
747	 41.27	0	956565..957710	+	381	126640862	-	A1S_0806	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
748	 38.62	0	957829..958869	+	346	126640863	-	A1S_0807	-	8-amino-7-oxononanoate synthase
749	 38.67	0	958998..959615	+	205	126640864	-	A1S_0808	-	putative biotin biosynthesis protein (BioC)
750	 38.10	0	959790..960272	+	160	126640865	-	A1S_0809	-	dethiobiotin synthetase x
751	 43.69	+1	960325..961164	-	279	126640866	-	A1S_0810	-	putative ribosomal large subunit pseudouridine synthase B
752	 41.21	0	961290..961886	-	198	126640867	-	A1S_0811	-	hypothetical protein
753	 38.65	0	961883..962446	-	187	126640868	-	A1S_0812	-	hypothetical protein
754	 39.66	0	962903..963376	-	157	126640869	-	A1S_0813	-	hypothetical protein
755	 39.93	0	963610..964185	-	191	126640870	-	A1S_0814	-	hypothetical protein
756	 40.35	0	964531..964929	+	132	126640871	-	A1S_0815	-	hypothetical protein
757	 48.39	+2	965004..965189	+	61	126640872	-	A1S_0816	-	50S ribosomal protein L32
758	 41.75	0	965426..966328	+	300	126640873	-	A1S_0817	-	hypothetical protein
759	 41.04	0	966502..967059	+	185	126640874	-	A1S_0818	-	hypothetical protein
760	 37.30	0	967129..967380	+	83	126640875	-	A1S_0819	-	acyl carrier protein (ACP)
761	 35.47	-1	967718..968044	+	108	126640876	-	A1S_0820	-	putative peptidoglycan-binding LysM
762	 39.70	0	968090..968623	-	177	126640877	-	A1S_0821	-	hypothetical protein
763	 37.39	0	969039..969629	+	196	126640878	-	A1S_0822	-	putative hydrolase
764	 41.85	0	969695..970246	-	183	126640879	-	A1S_0823	-	34 dihydroxy-2-butanone-4-phosphate synthase
40.16	MEAN

3.49	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.