IslandPathversion 1.0

IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.16 STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
624	 60.06	+2	796969..797619	+	216	126640739	-	A1S_0673	-	putative transposase
625	 61.47	+2	797682..798335	+	217	126640740	-	A1S_0674	-	putative transposase
626	 61.84	+2	798900..799604	-	234	126640741	-	A1S_0675	-	dihydropteroate synthase
627	 36.42	-1	799892..800377	+	161	126640742	-	A1S_0676	-	putative transposase
628	 38.69	0	800464..800631	+	55	126640743	-	A1S_0677	-	transposase
629	 35.56	-1	812720..814114	+	464	126640744	-	A1S_0682	-	RNA polymerase factor sigma-54
630	 33.33	-1	814382..814621	+	79	126640745	-	A1S_0683	-	putative sigma(54) modulation protein RpoX
631	 43.25	0	814760..815011	+	83	126640746	-	A1S_0684	-	putative toluene tolerance protein Ttg2F
632	 41.41	0	815111..816274	+	387	126640747	-	A1S_0685	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
633	 39.14	0	816493..816957	+	154	126640748	-	A1S_0686	-	ATP-phosphoribosyltransferase
634	 42.61	0	817264..818352	+	362	126640749	-	A1S_0687	-	histidinol dehydrogenase
635	 39.20	0	818485..819507	+	340	126640750	-	A1S_0688	-	histidinol-phosphate aminotransferase
636	 30.49	-2	819511..820740	-	409	126640751	-	A1S_0689	-	p-aminobenzoate synthetase
637	 39.21	0	821275..822057	+	260	126640752	-	A1S_0690	-	FilA
638	 37.50	0	822636..823187	+	183	126640753	-	A1S_0691	-	FilB
639	 37.50	0	823656..824423	+	255	126640754	-	A1S_0692	-	FilC
640	 38.30	0	824550..826100	+	516	126640755	-	A1S_0693	-	FilD
641	 36.25	-1	826223..827320	+	365	126640756	-	A1S_0694	-	FilE
642	 34.17	-1	827484..829271	+	595	126640757	-	A1S_0695	-	FilF
643	 40.68	0	829327..829884	-	185	126640758	-	A1S_0696	-	putative MutT/nudix family protein
644	 40.88	0	830140..830616	+	158	126640759	-	A1S_0697	-	putative MutT/nudix family protein
645	 38.85	0	830768..831166	+	132	126640760	-	A1S_0698	-	putative anhydratase
646	 43.65	0	831422..831964	+	180	126640761	-	A1S_0699	-	putative glycoprotein endopeptidase metalloprotease
647	 42.04	0	832159..832767	+	202	126640762	-	A1S_0700	-	putative methyltransferase
648	 41.00	0	832967..834010	+	347	126640763	-	A1S_0701	-	hypothetical protein
649	 38.16	0	834129..834356	+	75	126640764	-	A1S_0702	-	hypothetical protein
650	 41.20	0	834529..835176	+	215	126640765	-	A1S_0703	-	putative esterase
651	 35.84	-1	835173..835451	-	92	126640766	-	A1S_0704	-	hypothetical protein
652	 39.27	0	835744..836316	+	190	126640767	-	A1S_0705	-	D-ribulose-5-phosphate 3-epimerase
653	 37.23	0	836673..837494	+	273	126640768	-	A1S_0706	-	putative hydrolase
654	 41.46	0	838304..839965	+	553	126640769	-	A1S_0707	-	copper resistance protein A precursor
655	 39.42	0	839952..840707	+	251	126640770	-	A1S_0708	-	copper resistance protein B precursor
656	 39.90	0	840940..841731	+	263	126640771	-	A1S_0709	-	putative cation efflux system protein
657	 36.36	-1	841938..842201	+	87	126640772	-	A1S_0710	-	SMR family drug transporter
658	 41.18	0	842285..842692	+	135	126640773	-	A1S_0711	-	methylated-DNA-(protein)-cysteine S- methyltransferase
659	 43.94	+1	843051..844049	+	332	126640774	argJ	A1S_0712	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
660	 45.65	+1	844433..845260	+	275	126640775	-	A1S_0713	-	quinolinate synthetase
661	 39.51	0	845958..846977	-	339	126640776	-	A1S_0718	-	adenosine deaminase
662	 45.77	+1	847478..848530	+	350	126640777	-	A1S_0719	-	zinc-binding dehydrogenase
663	 38.70	0	848624..849313	-	229	126640778	-	A1S_0720	-	LysR family transcriptional regulator
664	 45.92	+1	849910..851037	+	375	126640779	-	A1S_0721	-	glutaryl-CoA dehydrogenase
665	 42.08	0	851382..852581	+	399	126640780	-	A1S_0722	-	major facilitator superfamily cis,cis-muconate transporter
666	 42.28	0	852769..853863	+	364	126640781	-	A1S_0723	-	L-carnitine dehydrogenase
667	 41.03	0	853968..855137	-	389	126640782	-	A1S_0724	-	citrate utilization protein B
668	 44.39	+1	855091..856347	-	418	126640783	-	A1S_0725	-	tricarballylate dehydrogenase
669	 44.06	+1	856601..857374	-	257	126640784	-	A1S_0726	-	LysR family transcriptional regulator
670	 41.41	0	857662..858342	-	226	126640785	-	A1S_0727	-	putative substrate-binding protein
671	 44.50	+1	858550..859704	-	384	126640786	-	A1S_0728	-	major facilitator superfamily citrate-proton symporter
672	 42.72	0	860139..860990	-	283	126640787	-	A1S_0729	-	LysR family transcriptional regulator
673	 40.78	0	861626..862753	+	375	126640788	-	A1S_0730	-	putative long-chain fatty acid transport protein
674	 42.91	0	862985..864154	+	389	126640789	-	A1S_0731	-	amidohydrolase
675	 38.87	0	864213..865187	-	324	126640790	-	A1S_0732	-	AraC family transcriptional regulator
676	 40.63	0	865571..866461	+	296	126640791	-	A1S_0733	-	hypothetical protein
677	 36.64	-1	866563..866985	-	140	126640792	-	A1S_0734	-	transporter
678	 39.25	0	867607..868299	+	230	126640793	-	A1S_0735	-	LysR family transcriptional regulator
679	 40.02	0	868666..869652	+	328	126640794	-	A1S_0736	-	hypothetical protein
680	 44.32	+1	869881..870717	+	278	126640795	-	A1S_0737	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
681	 42.93	0	870978..871394	+	138	126640796	-	A1S_0738	-	putative flavoprotein oxidoreductase
682	 39.31	0	872488..873039	+	183	126640797	-	A1S_0739	-	putative transcriptional regulator
683	 29.56	-2	873036..874253	-	405	126640798	-	A1S_0740	-	putative phage related protein
684	 39.56	0	874446..874718	-	90	126640799	-	A1S_0741	-	hypothetical protein
685	 37.09	0	875602..878292	+	896	126640800	-	A1S_0742	-	iron-regulated protein
686	 39.86	0	878374..878664	-	96	126640801	-	A1S_0743	-	hypothetical protein
687	 41.03	0	878957..879424	+	155	126640802	-	A1S_0744	-	TetR family transcriptional regulator
688	 44.55	+1	879534..882155	-	873	126640803	-	A1S_0745	-	hypothetical protein
689	 44.11	+1	883242..884327	-	361	126640804	-	A1S_0746	-	ribonucleotide-diphosphate reductase subunit beta
690	 42.89	0	884853..887510	-	885	126640805	-	A1S_0747	-	ribonucleotide-diphosphate reductase subunit alpha
691	 42.22	0	888397..888936	+	179	126640806	-	A1S_0748	-	NarL family two-component response regulator
692	 41.46	0	889191..890618	+	475	126640807	-	A1S_0749	-	BfmS
693	 36.33	-1	890641..890940	-	99	126640808	-	A1S_0750	-	hypothetical protein
694	 38.68	0	891087..892058	-	323	126640809	-	A1S_0751	-	diguanylate cyclase
695	 46.01	+1	892935..893486	+	183	126640810	-	A1S_0752	-	NADH dehydrogenase I chain A
696	 43.33	0	893601..894170	+	189	126640811	-	A1S_0753	-	NADH dehydrogenase I chain B
697	 44.46	+1	894254..896041	+	595	162286749	-	A1S_0754	-	bifunctional NADH:ubiquinone oxidoreductase subunit C/D
698	 41.89	0	896226..896564	+	112	126640813	-	A1S_0755	-	NADH dehydrogenase I chain E
699	 45.45	+1	896708..897895	+	395	126640814	-	A1S_0756	-	NADH dehydrogenase I chain F
700	 43.76	+1	898099..900591	+	830	126640815	-	A1S_0757	-	NADH dehydrogenase subunit G
701	 43.19	0	900709..901611	+	300	126640816	-	A1S_0758	-	NADH dehydrogenase subunit H
702	 44.04	+1	901678..902172	+	164	126640817	-	A1S_0759	-	NADH dehydrogenase subunit I
703	 44.27	+1	902298..902690	+	130	126640818	-	A1S_0760	-	NADH dehydrogenase I chain J
704	 47.26	+2	902762..902998	+	78	126640819	-	A1S_0761	-	NADH dehydrogenase I chain K
705	 41.59	0	903142..904884	+	580	126640820	-	A1S_0762	-	NADH dehydrogenase subunit L
706	 41.63	0	905003..906484	+	493	126640821	-	A1S_0763	-	NADH dehydrogenase subunit M
707	 39.61	0	906565..907983	+	472	126640822	-	A1S_0764	-	NADH dehydrogenase I chain N
708	 39.96	0	908192..908719	+	175	126640823	-	A1S_0765	-	uracil phosphoribosyltransferase
709	 35.03	-1	908836..909129	+	97	126640824	-	A1S_0766	-	putative cold shock protein
710	 42.24	0	909395..909742	+	115	126640825	-	A1S_0767	-	Excalibur
711	 40.87	0	909754..910536	-	260	126640826	-	A1S_0768	-	LysR family transcriptional regulator
712	 43.09	0	910803..911489	+	228	126640827	-	A1S_0769	-	ferredoxin--NADP+ reductase
713	 40.28	0	911540..911899	-	119	126640828	-	A1S_0770	-	hypothetical protein
714	 39.96	0	912830..914383	+	517	126640829	-	A1S_0771	-	hypothetical protein
715	 39.83	0	914695..915894	-	399	126640830	-	A1S_0772	-	putative oxidoreductase
716	 39.39	0	916012..916572	-	186	126640831	-	A1S_0773	-	putative D-cysteine desulfhydrase (DcyD)
717	 41.82	0	916957..917958	-	333	126640832	-	A1S_0774	-	RND efflux transporter
718	 41.29	0	918125..919519	-	464	126640833	-	A1S_0775	-	MFS family transporter
719	 39.74	0	919765..920232	-	155	126640834	-	A1S_0776	-	TetR family transcriptional regulator
720	 37.31	0	920558..921136	+	192	126640835	-	A1S_0777	-	putative threonine efflux protein (RhtC)
721	 40.85	0	921615..923624	-	669	126640836	metG	A1S_0778	-	methionyl-tRNA synthetase
722	 36.60	-1	924036..924464	+	142	126640837	-	A1S_0779	-	hypothetical protein
723	 42.22	0	924748..925839	+	363	126640838	-	A1S_0780	-	putative ATP-binding protein
40.16	MEAN

3.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.