IslandPathversion 1.0

IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.16 STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
583	 37.24	0	705210..706106	+	298	126640698	-	A1S_0631	-	hypothetical protein
584	 31.74	-2	706503..709964	+	1153	126640699	-	A1S_0632	-	DNA primase
585	 40.03	0	715277..717829	+	850	126640700	-	A1S_0633	-	hypothetical protein
586	 39.08	0	718470..720347	+	625	126640701	-	A1S_0634	-	hypothetical protein
587	 36.36	-1	721812..723065	+	417	126640702	-	A1S_0635	-	hypothetical protein
588	 35.71	-1	723347..723850	+	167	126640703	-	A1S_0636	-	DNA polymerase V component
589	 34.31	-1	724014..725141	+	375	126640704	-	A1S_0637	-	DNA-directed DNA polymerase
590	 34.94	-1	725475..726344	+	289	126640705	-	A1S_0638	-	hypothetical protein
591	 33.07	-2	727285..728043	-	252	126640706	-	A1S_0639	-	IncC protein
592	 40.29	0	731423..732184	-	253	126640707	-	A1S_0640	-	hypothetical protein
593	 36.71	0	732448..733542	-	364	126640708	-	A1S_0641	-	hypothetical protein
594	 38.50	0	734600..735586	-	328	126640709	-	A1S_0642	-	hypothetical protein
595	 38.84	0	735943..736977	-	344	126640710	-	A1S_0643	-	hypothetical protein
596	 39.15	0	737245..737829	-	194	126640711	-	A1S_0644	-	hypothetical protein
597	 41.35	0	744831..745841	+	336	126640712	-	A1S_0645	-	hypothetical protein
598	 39.14	0	751516..754647	+	1043	126640713	-	A1S_0646	-	IcmB protein
599	 40.38	0	755246..756706	+	486	126640714	-	A1S_0647	-	IcmO protein
600	 35.06	-1	760150..760611	-	153	126640715	-	A1S_0648	-	hypothetical protein
601	 36.47	-1	762204..763862	-	552	126640716	-	A1S_0649	-	putative phage primase
602	 39.04	0	766275..767063	+	262	126640717	-	A1S_0650	-	conjugal transfer protein
603	 37.87	0	770711..772804	+	697	126640718	-	A1S_0651	-	TraB protein
604	 33.76	-1	775999..776232	+	77	126640719	-	A1S_0652	-	putative ferrous iron transport protein A
605	 41.13	0	776229..778076	+	615	126640720	-	A1S_0653	-	putative ferrous iron transport protein B
606	 43.12	0	778352..778627	+	91	126640721	-	A1S_0654	-	regulatory protein ArsR
607	 38.55	0	778803..779627	+	274	126640722	-	A1S_0655	-	putative efflux protein
608	 35.81	-1	779873..780802	-	309	126640723	-	A1S_0656	-	hypothetical protein
609	 41.57	0	781145..781411	+	88	126640724	-	A1S_0657	-	transposase
610	 40.28	0	781681..782313	+	210	126640725	-	A1S_0658	-	transposase
611	 37.98	0	782608..783618	-	336	126640726	-	A1S_0659	-	hypothetical protein
612	 36.24	-1	783750..784472	-	240	126640727	-	A1S_0660	-	transposition helper
613	 58.02	+2	784871..786073	+	400	126640728	-	A1S_0661	-	phage integrase family protein
614	 54.70	+2	785564..785680	-	38	126640729	-	A1S_0662	-	phage integrase family protein
615	 56.43	+2	786513..787274	+	253	126640730	-	A1S_0663	-	putative DNA helicase
616	 58.94	+2	787405..788142	+	245	126640731	-	A1S_0664	-	replication C family protein
617	 59.87	+2	789504..790283	+	259	126640732	-	A1S_0665	-	putative mating pair formation protein
618	 55.74	+2	790522..791967	+	481	126640733	-	A1S_0666	-	TrbL/VirB6 plasmid conjugal transfer protein
619	 53.97	+2	792320..792508	+	62	126640734	-	A1S_0667	-	hypothetical protein
620	 61.69	+2	793093..793614	-	173	126640735	-	A1S_0669	-	bile acid:sodium symporter
621	 61.54	+2	793984..794373	-	129	126640737	-	A1S_0671	-	protein tyrosine phosphatase
622	 60.68	+2	794032..794532	+	166	126640736	-	A1S_0670	-	protein tyrosine phosphatase
623	 66.85	+2	795863..796411	+	182	126640738	-	A1S_0672	-	resolvase
624	 60.06	+2	796969..797619	+	216	126640739	-	A1S_0673	-	putative transposase
625	 61.47	+2	797682..798335	+	217	126640740	-	A1S_0674	-	putative transposase
626	 61.84	+2	798900..799604	-	234	126640741	-	A1S_0675	-	dihydropteroate synthase
627	 36.42	-1	799892..800377	+	161	126640742	-	A1S_0676	-	putative transposase
628	 38.69	0	800464..800631	+	55	126640743	-	A1S_0677	-	transposase
629	 35.56	-1	812720..814114	+	464	126640744	-	A1S_0682	-	RNA polymerase factor sigma-54
630	 33.33	-1	814382..814621	+	79	126640745	-	A1S_0683	-	putative sigma(54) modulation protein RpoX
631	 43.25	0	814760..815011	+	83	126640746	-	A1S_0684	-	putative toluene tolerance protein Ttg2F
632	 41.41	0	815111..816274	+	387	126640747	-	A1S_0685	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
633	 39.14	0	816493..816957	+	154	126640748	-	A1S_0686	-	ATP-phosphoribosyltransferase
634	 42.61	0	817264..818352	+	362	126640749	-	A1S_0687	-	histidinol dehydrogenase
635	 39.20	0	818485..819507	+	340	126640750	-	A1S_0688	-	histidinol-phosphate aminotransferase
636	 30.49	-2	819511..820740	-	409	126640751	-	A1S_0689	-	p-aminobenzoate synthetase
637	 39.21	0	821275..822057	+	260	126640752	-	A1S_0690	-	FilA
638	 37.50	0	822636..823187	+	183	126640753	-	A1S_0691	-	FilB
639	 37.50	0	823656..824423	+	255	126640754	-	A1S_0692	-	FilC
640	 38.30	0	824550..826100	+	516	126640755	-	A1S_0693	-	FilD
641	 36.25	-1	826223..827320	+	365	126640756	-	A1S_0694	-	FilE
642	 34.17	-1	827484..829271	+	595	126640757	-	A1S_0695	-	FilF
643	 40.68	0	829327..829884	-	185	126640758	-	A1S_0696	-	putative MutT/nudix family protein
644	 40.88	0	830140..830616	+	158	126640759	-	A1S_0697	-	putative MutT/nudix family protein
645	 38.85	0	830768..831166	+	132	126640760	-	A1S_0698	-	putative anhydratase
646	 43.65	0	831422..831964	+	180	126640761	-	A1S_0699	-	putative glycoprotein endopeptidase metalloprotease
647	 42.04	0	832159..832767	+	202	126640762	-	A1S_0700	-	putative methyltransferase
648	 41.00	0	832967..834010	+	347	126640763	-	A1S_0701	-	hypothetical protein
649	 38.16	0	834129..834356	+	75	126640764	-	A1S_0702	-	hypothetical protein
650	 41.20	0	834529..835176	+	215	126640765	-	A1S_0703	-	putative esterase
651	 35.84	-1	835173..835451	-	92	126640766	-	A1S_0704	-	hypothetical protein
652	 39.27	0	835744..836316	+	190	126640767	-	A1S_0705	-	D-ribulose-5-phosphate 3-epimerase
653	 37.23	0	836673..837494	+	273	126640768	-	A1S_0706	-	putative hydrolase
654	 41.46	0	838304..839965	+	553	126640769	-	A1S_0707	-	copper resistance protein A precursor
655	 39.42	0	839952..840707	+	251	126640770	-	A1S_0708	-	copper resistance protein B precursor
656	 39.90	0	840940..841731	+	263	126640771	-	A1S_0709	-	putative cation efflux system protein
657	 36.36	-1	841938..842201	+	87	126640772	-	A1S_0710	-	SMR family drug transporter
658	 41.18	0	842285..842692	+	135	126640773	-	A1S_0711	-	methylated-DNA-(protein)-cysteine S- methyltransferase
659	 43.94	+1	843051..844049	+	332	126640774	argJ	A1S_0712	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
660	 45.65	+1	844433..845260	+	275	126640775	-	A1S_0713	-	quinolinate synthetase
661	 39.51	0	845958..846977	-	339	126640776	-	A1S_0718	-	adenosine deaminase
662	 45.77	+1	847478..848530	+	350	126640777	-	A1S_0719	-	zinc-binding dehydrogenase
663	 38.70	0	848624..849313	-	229	126640778	-	A1S_0720	-	LysR family transcriptional regulator
664	 45.92	+1	849910..851037	+	375	126640779	-	A1S_0721	-	glutaryl-CoA dehydrogenase
665	 42.08	0	851382..852581	+	399	126640780	-	A1S_0722	-	major facilitator superfamily cis,cis-muconate transporter
666	 42.28	0	852769..853863	+	364	126640781	-	A1S_0723	-	L-carnitine dehydrogenase
667	 41.03	0	853968..855137	-	389	126640782	-	A1S_0724	-	citrate utilization protein B
668	 44.39	+1	855091..856347	-	418	126640783	-	A1S_0725	-	tricarballylate dehydrogenase
669	 44.06	+1	856601..857374	-	257	126640784	-	A1S_0726	-	LysR family transcriptional regulator
670	 41.41	0	857662..858342	-	226	126640785	-	A1S_0727	-	putative substrate-binding protein
671	 44.50	+1	858550..859704	-	384	126640786	-	A1S_0728	-	major facilitator superfamily citrate-proton symporter
672	 42.72	0	860139..860990	-	283	126640787	-	A1S_0729	-	LysR family transcriptional regulator
673	 40.78	0	861626..862753	+	375	126640788	-	A1S_0730	-	putative long-chain fatty acid transport protein
674	 42.91	0	862985..864154	+	389	126640789	-	A1S_0731	-	amidohydrolase
675	 38.87	0	864213..865187	-	324	126640790	-	A1S_0732	-	AraC family transcriptional regulator
676	 40.63	0	865571..866461	+	296	126640791	-	A1S_0733	-	hypothetical protein
677	 36.64	-1	866563..866985	-	140	126640792	-	A1S_0734	-	transporter
678	 39.25	0	867607..868299	+	230	126640793	-	A1S_0735	-	LysR family transcriptional regulator
679	 40.02	0	868666..869652	+	328	126640794	-	A1S_0736	-	hypothetical protein
680	 44.32	+1	869881..870717	+	278	126640795	-	A1S_0737	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
681	 42.93	0	870978..871394	+	138	126640796	-	A1S_0738	-	putative flavoprotein oxidoreductase
682	 39.31	0	872488..873039	+	183	126640797	-	A1S_0739	-	putative transcriptional regulator
40.16	MEAN

3.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.