IslandPathversion 1.0

IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.16 STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
539	 44.86	+1	634570..634968	+	132	126640654	-	A1S_0585	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
540	 42.47	0	635024..635242	+	72	126640655	-	A1S_0586	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
541	 41.21	0	635333..636094	+	253	126640656	-	A1S_0587	-	pantoate--beta-alanine ligase
542	 39.79	0	636117..636968	+	283	162286750	-	A1S_0588	-	hypothetical protein
543	 37.78	0	636965..637234	+	89	126640658	-	A1S_0589	-	phosphocarrier protein (HPr-like)
544	 40.54	0	637330..637773	+	147	126640659	-	A1S_0590	-	hypothetical protein
545	 41.61	0	637833..639221	-	462	126640660	-	A1S_0591	-	acyl-CoA synthetase
546	 40.91	0	640146..641795	+	549	126640661	-	A1S_0592	-	threonyl-tRNA synthetase
547	 41.85	0	642083..642352	+	89	126640662	-	A1S_0593	-	protein chain initiation factor IF-3
548	 39.61	0	642621..643178	+	185	126640663	-	A1S_0594	-	putative glutathione S-transferase
549	 33.99	-1	643354..643659	+	101	126640664	-	A1S_0595	-	hypothetical protein
550	 40.75	0	643699..644709	-	336	126640665	-	A1S_0596	-	putative transporter
551	 48.06	+2	645404..645763	+	119	126640666	rplT	A1S_0597	-	50S ribosomal protein L20
552	 38.99	0	646090..646407	+	105	126640667	-	A1S_0598	-	hypothetical protein
553	 32.59	-2	646568..646969	+	133	126640668	-	A1S_0599	-	hypothetical protein
554	 36.32	-1	646976..647545	-	189	126640669	-	A1S_0600	-	hypothetical protein
555	 42.23	0	648272..649114	+	280	126640670	-	A1S_0601	-	phenylalanyl-tRNA synthetase alpha-subunit
556	 41.45	0	649226..651529	+	767	126640671	-	A1S_0602	-	phenylalanyl-tRNA synthetase beta subunit
557	 45.42	+1	651550..651822	+	90	126640672	-	A1S_0603	-	integration host factor alpha subunit
558	 38.84	0	654250..654576	-	108	126640673	-	A1S_0606	-	hypothetical protein
559	 41.19	0	654901..656376	+	491	126640674	-	A1S_0607	-	exopolyphosphatase
560	 43.26	0	656542..657216	+	224	126640675	-	A1S_0608	-	acetyl-coenzyme A carboxylase carboxyl transferase (alpha subunit)
561	 39.10	0	657273..658556	+	427	126640676	-	A1S_0609	-	cell cycle protein
562	 40.87	0	658582..659364	+	260	126640677	-	A1S_0610	-	pyrroline-5-carboxylate reductase
563	 36.97	0	659461..659955	+	164	126640678	-	A1S_0611	-	putative integral membrane resistance protein
564	 39.81	0	660015..662654	-	879	126640679	-	A1S_0612	-	DNA polymerase I
565	 39.31	0	663156..665747	+	863	126640680	-	A1S_0613	-	hypothetical protein
566	 38.47	0	665737..666417	-	226	126640681	-	A1S_0614	-	putative small conductance mechanosensitive ion channel
567	 42.40	0	666664..667380	-	238	126640682	-	A1S_0615	-	hypothetical protein
568	 43.23	0	667870..669072	+	400	126640683	-	A1S_0616	-	secretion protein XcpR
569	 36.79	0	669127..669444	-	105	126640684	-	A1S_0617	-	hypothetical protein
570	 35.31	-1	669646..669948	-	100	126640685	-	A1S_0618	-	hypothetical protein
571	 43.01	0	670635..671399	-	254	126640686	-	A1S_0619	-	putative carbon-nitrogen hydrolase
572	 37.55	0	671486..672007	-	173	126640687	-	A1S_0620	-	putative anti-anti-sigma factor
573	 38.47	0	672110..672907	-	265	126640688	-	A1S_0621	-	putative two-component response regulator
574	 42.90	0	673194..673820	-	208	126640689	-	A1S_0622	-	putative lipoprotein precursor (VacJ) transmembrane
575	 33.08	-2	674836..676848	-	670	126640690	-	A1S_0623	-	DNA mismatch repair enzyme
576	 40.09	0	677113..677748	-	211	126640691	-	A1S_0624	-	putative lipoprotein
577	 35.84	-1	678486..678923	+	145	126640692	-	A1S_0625	-	TetR family transcriptional regulator
578	 34.89	-1	679680..680321	+	213	126640693	-	A1S_0626	-	hypothetical protein
579	 37.51	0	683475..684719	-	414	126640694	-	A1S_0627	-	hypothetical protein
580	 41.89	0	686363..687379	+	338	126640695	-	A1S_0628	-	putative transposase
581	 34.84	-1	693089..697468	+	1459	126640696	-	A1S_0629	-	hypothetical protein
582	 40.30	0	703981..704970	+	329	126640697	-	A1S_0630	-	hypothetical protein
583	 37.24	0	705210..706106	+	298	126640698	-	A1S_0631	-	hypothetical protein
584	 31.74	-2	706503..709964	+	1153	126640699	-	A1S_0632	-	DNA primase
585	 40.03	0	715277..717829	+	850	126640700	-	A1S_0633	-	hypothetical protein
586	 39.08	0	718470..720347	+	625	126640701	-	A1S_0634	-	hypothetical protein
587	 36.36	-1	721812..723065	+	417	126640702	-	A1S_0635	-	hypothetical protein
588	 35.71	-1	723347..723850	+	167	126640703	-	A1S_0636	-	DNA polymerase V component
589	 34.31	-1	724014..725141	+	375	126640704	-	A1S_0637	-	DNA-directed DNA polymerase
590	 34.94	-1	725475..726344	+	289	126640705	-	A1S_0638	-	hypothetical protein
591	 33.07	-2	727285..728043	-	252	126640706	-	A1S_0639	-	IncC protein
592	 40.29	0	731423..732184	-	253	126640707	-	A1S_0640	-	hypothetical protein
593	 36.71	0	732448..733542	-	364	126640708	-	A1S_0641	-	hypothetical protein
594	 38.50	0	734600..735586	-	328	126640709	-	A1S_0642	-	hypothetical protein
595	 38.84	0	735943..736977	-	344	126640710	-	A1S_0643	-	hypothetical protein
596	 39.15	0	737245..737829	-	194	126640711	-	A1S_0644	-	hypothetical protein
597	 41.35	0	744831..745841	+	336	126640712	-	A1S_0645	-	hypothetical protein
598	 39.14	0	751516..754647	+	1043	126640713	-	A1S_0646	-	IcmB protein
599	 40.38	0	755246..756706	+	486	126640714	-	A1S_0647	-	IcmO protein
600	 35.06	-1	760150..760611	-	153	126640715	-	A1S_0648	-	hypothetical protein
601	 36.47	-1	762204..763862	-	552	126640716	-	A1S_0649	-	putative phage primase
602	 39.04	0	766275..767063	+	262	126640717	-	A1S_0650	-	conjugal transfer protein
603	 37.87	0	770711..772804	+	697	126640718	-	A1S_0651	-	TraB protein
604	 33.76	-1	775999..776232	+	77	126640719	-	A1S_0652	-	putative ferrous iron transport protein A
605	 41.13	0	776229..778076	+	615	126640720	-	A1S_0653	-	putative ferrous iron transport protein B
606	 43.12	0	778352..778627	+	91	126640721	-	A1S_0654	-	regulatory protein ArsR
607	 38.55	0	778803..779627	+	274	126640722	-	A1S_0655	-	putative efflux protein
608	 35.81	-1	779873..780802	-	309	126640723	-	A1S_0656	-	hypothetical protein
609	 41.57	0	781145..781411	+	88	126640724	-	A1S_0657	-	transposase
610	 40.28	0	781681..782313	+	210	126640725	-	A1S_0658	-	transposase
611	 37.98	0	782608..783618	-	336	126640726	-	A1S_0659	-	hypothetical protein
612	 36.24	-1	783750..784472	-	240	126640727	-	A1S_0660	-	transposition helper
613	 58.02	+2	784871..786073	+	400	126640728	-	A1S_0661	-	phage integrase family protein
614	 54.70	+2	785564..785680	-	38	126640729	-	A1S_0662	-	phage integrase family protein
615	 56.43	+2	786513..787274	+	253	126640730	-	A1S_0663	-	putative DNA helicase
616	 58.94	+2	787405..788142	+	245	126640731	-	A1S_0664	-	replication C family protein
617	 59.87	+2	789504..790283	+	259	126640732	-	A1S_0665	-	putative mating pair formation protein
618	 55.74	+2	790522..791967	+	481	126640733	-	A1S_0666	-	TrbL/VirB6 plasmid conjugal transfer protein
619	 53.97	+2	792320..792508	+	62	126640734	-	A1S_0667	-	hypothetical protein
620	 61.69	+2	793093..793614	-	173	126640735	-	A1S_0669	-	bile acid:sodium symporter
621	 61.54	+2	793984..794373	-	129	126640737	-	A1S_0671	-	protein tyrosine phosphatase
622	 60.68	+2	794032..794532	+	166	126640736	-	A1S_0670	-	protein tyrosine phosphatase
623	 66.85	+2	795863..796411	+	182	126640738	-	A1S_0672	-	resolvase
624	 60.06	+2	796969..797619	+	216	126640739	-	A1S_0673	-	putative transposase
625	 61.47	+2	797682..798335	+	217	126640740	-	A1S_0674	-	putative transposase
626	 61.84	+2	798900..799604	-	234	126640741	-	A1S_0675	-	dihydropteroate synthase
627	 36.42	-1	799892..800377	+	161	126640742	-	A1S_0676	-	putative transposase
628	 38.69	0	800464..800631	+	55	126640743	-	A1S_0677	-	transposase
629	 35.56	-1	812720..814114	+	464	126640744	-	A1S_0682	-	RNA polymerase factor sigma-54
630	 33.33	-1	814382..814621	+	79	126640745	-	A1S_0683	-	putative sigma(54) modulation protein RpoX
631	 43.25	0	814760..815011	+	83	126640746	-	A1S_0684	-	putative toluene tolerance protein Ttg2F
632	 41.41	0	815111..816274	+	387	126640747	-	A1S_0685	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
633	 39.14	0	816493..816957	+	154	126640748	-	A1S_0686	-	ATP-phosphoribosyltransferase
634	 42.61	0	817264..818352	+	362	126640749	-	A1S_0687	-	histidinol dehydrogenase
635	 39.20	0	818485..819507	+	340	126640750	-	A1S_0688	-	histidinol-phosphate aminotransferase
636	 30.49	-2	819511..820740	-	409	126640751	-	A1S_0689	-	p-aminobenzoate synthetase
637	 39.21	0	821275..822057	+	260	126640752	-	A1S_0690	-	FilA
638	 37.50	0	822636..823187	+	183	126640753	-	A1S_0691	-	FilB
40.16	MEAN

3.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.