IslandPathversion 1.0

IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.16 STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
483	 38.38	0	568901..569395	+	164	126640598	-	A1S_0527	-	putative holo-(acyl carrier protein) synthase 2
484	 38.78	0	569463..569921	-	152	126640599	-	A1S_0528	-	preprotein translocase subunit SecB
485	 38.76	0	569949..570206	-	85	126640600	-	A1S_0529	-	glutaredoxin
486	 42.91	0	570218..570499	-	93	126640601	-	A1S_0530	-	hypothetical protein
487	 41.93	0	570731..571498	-	255	126640602	-	A1S_0531	-	putative GTPase
488	 38.89	0	571960..572481	+	173	126640603	-	A1S_0532	-	oligoribonuclease
489	 39.43	0	572697..573368	+	223	126640604	-	A1S_0533	-	hypothetical protein
490	 42.41	0	573505..574308	+	267	126640605	-	A1S_0534	-	NADH-dependent enoyl-ACP reductase
491	 43.92	+1	574379..575785	-	468	126640606	-	A1S_0535	-	RND efflux transporter
492	 44.59	+1	575796..577634	-	612	126640607	-	A1S_0536	-	macrolide transport protein
493	 40.96	0	577793..578041	-	82	126640608	-	A1S_0537	-	RND efflux transporter
494	 39.91	0	578044..578910	-	288	126640609	-	A1S_0538	-	RND efflux transporter
495	 39.60	0	579240..580229	-	329	126640610	-	A1S_0539	-	putative DNA polymerase III delta subunit
496	 41.71	0	580249..580773	-	174	126640611	-	A1S_0540	-	putative minor lipoprotein
497	 39.47	0	580786..581502	-	238	126640612	-	A1S_0541	-	leucyl-tRNA synthetase
498	 43.65	+1	581807..583279	-	490	126640613	-	A1S_0542	-	leucyl-tRNA synthetase
499	 43.16	0	584606..586162	+	518	126640614	-	A1S_0543	-	acetolactate synthase 3 catalytic subunit
500	 41.15	0	586219..586653	+	144	126640615	ilvH	A1S_0544	-	acetolactate synthase 3 regulatory subunit
501	 43.35	0	586914..587702	+	262	126640616	-	A1S_0545	-	acetohydroxy acid isomeroreductase
502	 38.30	0	588114..590087	+	657	126640617	-	A1S_0546	-	hypothetical protein
503	 32.82	-2	590865..591257	+	130	126640618	-	A1S_0547	-	putative transcriptional regulator
504	 29.26	-2	591474..592013	-	179	126640619	-	A1S_0548	-	TetR family transcriptional regulator
505	 37.16	0	592431..593240	+	269	126640620	-	A1S_0549	-	hypothetical protein
506	 42.95	0	593764..596445	+	893	126640621	-	A1S_0550	-	putative VGR-related protein
507	 40.95	0	596572..598041	+	489	126640622	-	A1S_0551	-	hypothetical protein
508	 37.47	0	598119..598916	+	265	126640623	-	A1S_0552	-	hypothetical protein
509	 41.18	0	599283..600110	+	275	126640624	-	A1S_0553	-	hypothetical protein
510	 42.30	0	600367..601872	+	501	126640625	prfC	A1S_0554	-	peptide chain release factor 3
511	 37.32	0	602309..602785	+	158	126640626	-	A1S_0555	-	hypothetical protein
512	 39.13	0	602987..603814	+	275	126640627	-	A1S_0556	-	hypothetical protein
513	 41.10	0	603898..604644	+	248	126640628	-	A1S_0557	-	hypothetical protein
514	 44.19	+1	605022..607508	+	828	126640629	-	A1S_0558	-	aconitate hydratase 1
515	 44.49	+1	607942..608604	+	220	126640630	-	A1S_0559	-	putative NAD(P)-binding enzyme
516	 37.40	0	609001..609786	+	261	126640631	-	A1S_0560	-	putative transcriptional regulator
517	 42.62	0	609794..610267	-	157	126640632	-	A1S_0561	-	hypothetical protein
518	 43.89	+1	610638..611594	-	318	126640633	-	A1S_0562	-	tRNA-dihydrouridine synthase A
519	 40.18	0	611791..612768	-	325	126640634	-	A1S_0563	-	MFS family transporter
520	 35.78	-1	612994..613401	-	135	126640635	-	A1S_0564	-	hypothetical protein
521	 38.08	0	613469..614395	-	308	126640636	-	A1S_0565	-	hypothetical protein
522	 43.71	+1	614903..615760	+	285	126640637	-	A1S_0566	-	pyridine nucleotide transhydrogenase (proton pump) alpha subunit (part1)
523	 41.33	0	615862..616086	+	74	126640638	-	A1S_0567	-	pyridine nucleotide transhydrogenase (proton pump) alpha subunit (part2)
524	 43.95	+1	616216..617553	+	445	126640639	-	A1S_0568	-	pyridine nucleotide transhydrogenase beta subunit
525	 40.24	0	617606..618343	-	245	126640640	-	A1S_0569	-	dehydrogenase/reductase
526	 42.54	0	618678..619079	-	133	126640641	-	A1S_0570	-	hypothetical protein
527	 39.70	0	619161..619757	-	198	126640642	-	A1S_0571	-	hydroxypyruvate isomerase
528	 44.64	+1	619972..620838	-	288	126640643	-	A1S_0572	-	putative 3-hydroxyisobutyrate dehydrogenase or 2-hydroxy-3-oxopropionate reductase
529	 40.34	0	620849..621562	-	237	126640644	-	A1S_0573	-	enoyl-CoA hydratase
530	 38.81	0	621734..624454	-	906	126640645	-	A1S_0574	-	GacS-like sensor kinase protein
531	 42.78	0	624888..625628	+	246	126640646	-	A1S_0575	-	cysteine synthase B
532	 38.30	0	625786..626469	+	227	126640647	-	A1S_0576	-	hypothetical protein
533	 40.09	0	628134..630206	+	690	126640648	-	A1S_0579	-	GTP pyrophosphokinase
534	 38.39	0	630251..630784	-	177	126640649	-	A1S_0580	-	putative short-chain dehydrogenase
535	 35.77	-1	631205..631942	+	245	126640650	mazG	A1S_0581	-	nucleoside triphosphate pyrophosphohydrolase
536	 33.06	-2	631959..632321	+	120	126640651	-	A1S_0582	-	putative DNA uptake protein
537	 43.17	0	632578..633909	+	443	126640652	-	A1S_0583	-	poly(A) polymerase I (PAP)
538	 42.37	0	634035..634388	+	117	126640653	-	A1S_0584	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
539	 44.86	+1	634570..634968	+	132	126640654	-	A1S_0585	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
540	 42.47	0	635024..635242	+	72	126640655	-	A1S_0586	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
541	 41.21	0	635333..636094	+	253	126640656	-	A1S_0587	-	pantoate--beta-alanine ligase
542	 39.79	0	636117..636968	+	283	162286750	-	A1S_0588	-	hypothetical protein
543	 37.78	0	636965..637234	+	89	126640658	-	A1S_0589	-	phosphocarrier protein (HPr-like)
544	 40.54	0	637330..637773	+	147	126640659	-	A1S_0590	-	hypothetical protein
545	 41.61	0	637833..639221	-	462	126640660	-	A1S_0591	-	acyl-CoA synthetase
546	 40.91	0	640146..641795	+	549	126640661	-	A1S_0592	-	threonyl-tRNA synthetase
547	 41.85	0	642083..642352	+	89	126640662	-	A1S_0593	-	protein chain initiation factor IF-3
548	 39.61	0	642621..643178	+	185	126640663	-	A1S_0594	-	putative glutathione S-transferase
549	 33.99	-1	643354..643659	+	101	126640664	-	A1S_0595	-	hypothetical protein
550	 40.75	0	643699..644709	-	336	126640665	-	A1S_0596	-	putative transporter
551	 48.06	+2	645404..645763	+	119	126640666	rplT	A1S_0597	-	50S ribosomal protein L20
552	 38.99	0	646090..646407	+	105	126640667	-	A1S_0598	-	hypothetical protein
553	 32.59	-2	646568..646969	+	133	126640668	-	A1S_0599	-	hypothetical protein
554	 36.32	-1	646976..647545	-	189	126640669	-	A1S_0600	-	hypothetical protein
555	 42.23	0	648272..649114	+	280	126640670	-	A1S_0601	-	phenylalanyl-tRNA synthetase alpha-subunit
556	 41.45	0	649226..651529	+	767	126640671	-	A1S_0602	-	phenylalanyl-tRNA synthetase beta subunit
557	 45.42	+1	651550..651822	+	90	126640672	-	A1S_0603	-	integration host factor alpha subunit
558	 38.84	0	654250..654576	-	108	126640673	-	A1S_0606	-	hypothetical protein
559	 41.19	0	654901..656376	+	491	126640674	-	A1S_0607	-	exopolyphosphatase
560	 43.26	0	656542..657216	+	224	126640675	-	A1S_0608	-	acetyl-coenzyme A carboxylase carboxyl transferase (alpha subunit)
561	 39.10	0	657273..658556	+	427	126640676	-	A1S_0609	-	cell cycle protein
562	 40.87	0	658582..659364	+	260	126640677	-	A1S_0610	-	pyrroline-5-carboxylate reductase
563	 36.97	0	659461..659955	+	164	126640678	-	A1S_0611	-	putative integral membrane resistance protein
564	 39.81	0	660015..662654	-	879	126640679	-	A1S_0612	-	DNA polymerase I
565	 39.31	0	663156..665747	+	863	126640680	-	A1S_0613	-	hypothetical protein
566	 38.47	0	665737..666417	-	226	126640681	-	A1S_0614	-	putative small conductance mechanosensitive ion channel
567	 42.40	0	666664..667380	-	238	126640682	-	A1S_0615	-	hypothetical protein
568	 43.23	0	667870..669072	+	400	126640683	-	A1S_0616	-	secretion protein XcpR
569	 36.79	0	669127..669444	-	105	126640684	-	A1S_0617	-	hypothetical protein
570	 35.31	-1	669646..669948	-	100	126640685	-	A1S_0618	-	hypothetical protein
571	 43.01	0	670635..671399	-	254	126640686	-	A1S_0619	-	putative carbon-nitrogen hydrolase
572	 37.55	0	671486..672007	-	173	126640687	-	A1S_0620	-	putative anti-anti-sigma factor
573	 38.47	0	672110..672907	-	265	126640688	-	A1S_0621	-	putative two-component response regulator
574	 42.90	0	673194..673820	-	208	126640689	-	A1S_0622	-	putative lipoprotein precursor (VacJ) transmembrane
575	 33.08	-2	674836..676848	-	670	126640690	-	A1S_0623	-	DNA mismatch repair enzyme
576	 40.09	0	677113..677748	-	211	126640691	-	A1S_0624	-	putative lipoprotein
577	 35.84	-1	678486..678923	+	145	126640692	-	A1S_0625	-	TetR family transcriptional regulator
578	 34.89	-1	679680..680321	+	213	126640693	-	A1S_0626	-	hypothetical protein
579	 37.51	0	683475..684719	-	414	126640694	-	A1S_0627	-	hypothetical protein
580	 41.89	0	686363..687379	+	338	126640695	-	A1S_0628	-	putative transposase
581	 34.84	-1	693089..697468	+	1459	126640696	-	A1S_0629	-	hypothetical protein
582	 40.30	0	703981..704970	+	329	126640697	-	A1S_0630	-	hypothetical protein
40.16	MEAN

3.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.