IslandPathversion 1.0

IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.16 STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
401	 37.55	0	483529..483789	+	86	126640516	-	A1S_0443	-	putative RNA-binding protein
402	 39.22	0	484228..484584	+	118	126640517	-	A1S_0444	-	hypothetical protein
403	 39.78	0	484697..484975	+	92	126640518	-	A1S_0445	-	hypothetical protein
404	 41.39	0	485012..486526	-	504	126640519	-	A1S_0446	-	CPA2 family Na+/H+ antiporter
405	 35.26	-1	486869..487024	-	51	126640520	rpmG	A1S_0447	-	50S ribosomal protein L33
406	 45.99	+1	487037..487273	-	78	126640521	rpmB	A1S_0448	-	50S ribosomal protein L28
407	 40.81	0	487441..488670	-	409	126640522	-	A1S_0449	-	coniferyl aldehyde dehydrogenase (CALDH)
408	 40.31	0	489179..489694	+	171	126640523	-	A1S_0450	-	TetR family transcriptional regulator
409	 38.14	0	489925..490632	+	235	126640524	-	A1S_0451	-	formyltetrahydrofolate deformylase
410	 43.53	0	491270..491779	+	169	126640525	-	A1S_0452	-	hypothetical protein
411	 42.75	0	491893..492444	+	183	126640526	-	A1S_0453	-	putative biopolymer transport protein (ExbB)
412	 42.01	0	492480..492848	+	122	126640527	-	A1S_0454	-	putative biopolymer transport protein (ExbD)
413	 36.09	-1	492909..493271	-	120	126640528	-	A1S_0455	-	peptide methionine sulfoxide reductase
414	 37.46	0	493531..494403	-	290	126640529	-	A1S_0456	-	hypothetical protein
415	 40.34	0	494601..495071	-	156	126640530	-	A1S_0457	-	dihydrofolate reductase
416	 40.86	0	495155..495898	-	247	126640531	thyA	A1S_0458	-	thymidylate synthase
417	 36.43	-1	496493..496750	-	85	126640532	-	A1S_0459	-	hypothetical protein
418	 44.98	+1	496926..497672	-	248	126640533	-	A1S_0460	-	prolipoprotein diacylglyceryl transferase
419	 43.59	0	497876..498616	+	246	126640534	-	A1S_0461	-	hypothetical protein
420	 42.30	0	498660..500711	-	683	126640535	-	A1S_0462	-	putative phosphatase
421	 39.95	0	501201..503300	-	699	126640536	-	A1S_0463	-	putative alkaline phosphatase
422	 36.29	-1	503555..504265	-	236	126640537	-	A1S_0464	-	Sec-independent protein translocase protein
423	 39.73	0	504322..504759	-	145	126640538	-	A1S_0465	-	Sec-independent protein translocase protein
424	 36.07	-1	504771..504989	-	72	126640539	-	A1S_0466	-	Sec-independent protein translocase protein
425	 40.49	0	505377..506117	+	246	126640540	-	A1S_0467	-	putative permease
426	 41.52	0	506310..506834	-	174	126640541	-	A1S_0468	-	hypothetical protein
427	 44.94	+1	507102..507644	-	180	126640542	-	A1S_0469	-	hypothetical protein
428	 40.72	0	507686..508186	-	166	126640543	-	A1S_0470	-	methionine biosynthesis protein
429	 43.18	0	508279..509334	-	351	126640544	metX	A1S_0471	-	homoserine O-acetyltransferase
430	 40.43	0	509522..511183	-	553	126640545	-	A1S_0472	-	2-isopropylmalate synthase
431	 39.10	0	511678..512301	-	207	126640546	-	A1S_0473	-	putative hydroxylase
432	 39.35	0	512467..514677	-	736	126640547	-	A1S_0474	-	putative ferric siderophore receptor protein
433	 40.24	0	515434..516504	+	356	126640548	tig	A1S_0475	-	trigger factor
434	 41.03	0	516835..517302	+	155	126640549	-	A1S_0476	-	ATP-dependent Clp protease proteolytic subunit
435	 39.27	0	517623..518717	+	364	126640550	clpX	A1S_0477	-	ATP-dependent protease ATP-binding subunit
436	 37.80	0	519000..519581	+	193	126640551	-	A1S_0478	-	putative signal peptide
437	 34.44	-1	519606..519785	-	59	126640552	-	A1S_0479	-	putative signal peptide
438	 43.68	+1	520304..521734	-	476	126640553	-	A1S_0480	-	fumarate hydratase
439	 44.09	+1	522059..524140	-	693	126640554	-	A1S_0481	-	phosphate acetyltransferase
440	 42.99	0	524247..525509	-	420	126640555	-	A1S_0482	-	acetate kinase (propionate kinase)
441	 46.57	+1	526374..528065	+	563	126640556	-	A1S_0483	-	phosphogluconate dehydratase
442	 46.18	+1	528131..528706	+	191	126640557	-	A1S_0484	-	hypothetical protein
443	 41.71	0	528968..530245	+	425	126640558	-	A1S_0485	-	GntP family high-affinity gluconate permease
444	 41.34	0	530402..530788	+	128	126640559	-	A1S_0486	-	thermoresistant gluconokinase
445	 42.53	0	532692..533789	-	365	126640560	proA	A1S_0489	-	gamma-glutamyl phosphate reductase
446	 41.31	0	534392..535570	+	392	126640561	-	A1S_0490	-	putative hydrolase
447	 37.87	0	535624..536394	-	256	126640562	-	A1S_0491	-	hypothetical protein
448	 45.23	+1	536791..537723	-	310	126640563	-	A1S_0492	-	beta-hexosaminidase
449	 42.21	0	538069..540186	+	705	126640564	-	A1S_0493	-	carboxy-terminal protease
450	 42.20	0	540487..541095	+	202	126640565	-	A1S_0494	-	putative glycosyl transferase
451	 43.67	+1	541149..541622	+	157	126640566	-	A1S_0495	-	putative glycosyl transferase
452	 43.63	0	541791..542198	+	135	126640567	-	A1S_0496	-	putative phosphatidylglycerophosphatase B
453	 39.91	0	542340..542552	+	70	126640568	-	A1S_0497	-	hypothetical protein
454	 45.60	+1	542725..543042	+	105	126640569	-	A1S_0498	-	nucleoside diphosphate kinase
455	 40.94	0	543267..544397	+	376	126640570	-	A1S_0499	-	putative Fe-S-cluster redox enzyme
456	 39.03	0	544635..545213	+	192	126640571	-	A1S_0500	-	type 4 fimbrial biogenesis protein
457	 39.69	0	545351..545995	+	214	126640572	-	A1S_0501	-	hypothetical protein
458	 42.82	0	546110..547132	+	340	126640573	-	A1S_0502	-	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
459	 41.42	0	547222..548421	+	399	126640574	hisS	A1S_0503	-	histidyl-tRNA synthetase
460	 37.91	0	548516..549148	+	210	126640575	-	A1S_0504	-	hypothetical protein
461	 41.81	0	549280..550293	+	337	126640576	-	A1S_0505	-	hypothetical protein
462	 43.25	0	550691..551890	+	399	126640577	engA	A1S_0506	-	GTP-binding protein EngA
463	 38.55	0	552165..552701	+	178	126640578	-	A1S_0507	-	hypothetical protein
464	 39.97	0	552902..553489	+	195	126640579	-	A1S_0508	-	putative acyltransferase
465	 34.11	-1	553491..553619	+	42	126640580	-	A1S_0509	-	putative acyl carrier protein
466	 36.23	-1	553806..554012	+	68	126640581	-	A1S_0510	-	acyl carrier protein
467	 42.64	0	554048..554563	+	171	126640582	-	A1S_0511	-	hypothetical protein
468	 39.79	0	554699..556231	+	510	126640583	-	A1S_0512	-	hypothetical protein
469	 40.00	0	556450..556974	+	174	126640584	-	A1S_0513	-	putative glycosyl transferase
470	 40.51	0	557040..557903	+	287	126640585	-	A1S_0514	-	hypothetical protein
471	 43.00	0	558076..559440	+	454	126640586	-	A1S_0515	-	histidine ammonia-lyase protein
472	 38.58	0	559466..559846	-	126	126640588	-	A1S_0517	-	hypothetical protein
473	 39.90	0	559498..559878	+	126	126640587	-	A1S_0516	-	hypothetical protein
474	 41.54	0	559923..560507	+	194	126640589	-	A1S_0518	-	hypothetical protein
475	 41.05	0	560659..562797	+	712	126640590	-	A1S_0519	-	hypothetical protein
476	 40.63	0	562986..564122	+	378	126640591	-	A1S_0520	-	putative oxidoreductase protein; putative dehydrogenase (flavoprotein)
477	 42.65	0	564188..564670	+	160	126640592	-	A1S_0521	-	hypothetical protein
478	 42.32	0	564835..565869	+	344	126640593	-	A1S_0522	-	3-oxoacyl-(acyl carrier protein) synthase I
479	 41.93	0	565911..566294	+	127	126640594	-	A1S_0523	-	putative 3-hydroxylacyl-(acyl carrier protein) dehydratase
480	 43.60	0	566489..567043	+	184	126640595	-	A1S_0524	-	hypothetical protein
481	 44.21	+1	567148..568269	+	373	126640596	-	A1S_0525	-	3-oxoacyl-(acyl carrier protein) synthase II
482	 39.08	0	568281..568715	+	144	126640597	-	A1S_0526	-	hypothetical protein
483	 38.38	0	568901..569395	+	164	126640598	-	A1S_0527	-	putative holo-(acyl carrier protein) synthase 2
484	 38.78	0	569463..569921	-	152	126640599	-	A1S_0528	-	preprotein translocase subunit SecB
485	 38.76	0	569949..570206	-	85	126640600	-	A1S_0529	-	glutaredoxin
486	 42.91	0	570218..570499	-	93	126640601	-	A1S_0530	-	hypothetical protein
487	 41.93	0	570731..571498	-	255	126640602	-	A1S_0531	-	putative GTPase
488	 38.89	0	571960..572481	+	173	126640603	-	A1S_0532	-	oligoribonuclease
489	 39.43	0	572697..573368	+	223	126640604	-	A1S_0533	-	hypothetical protein
490	 42.41	0	573505..574308	+	267	126640605	-	A1S_0534	-	NADH-dependent enoyl-ACP reductase
491	 43.92	+1	574379..575785	-	468	126640606	-	A1S_0535	-	RND efflux transporter
492	 44.59	+1	575796..577634	-	612	126640607	-	A1S_0536	-	macrolide transport protein
493	 40.96	0	577793..578041	-	82	126640608	-	A1S_0537	-	RND efflux transporter
494	 39.91	0	578044..578910	-	288	126640609	-	A1S_0538	-	RND efflux transporter
495	 39.60	0	579240..580229	-	329	126640610	-	A1S_0539	-	putative DNA polymerase III delta subunit
496	 41.71	0	580249..580773	-	174	126640611	-	A1S_0540	-	putative minor lipoprotein
497	 39.47	0	580786..581502	-	238	126640612	-	A1S_0541	-	leucyl-tRNA synthetase
498	 43.65	+1	581807..583279	-	490	126640613	-	A1S_0542	-	leucyl-tRNA synthetase
499	 43.16	0	584606..586162	+	518	126640614	-	A1S_0543	-	acetolactate synthase 3 catalytic subunit
500	 41.15	0	586219..586653	+	144	126640615	ilvH	A1S_0544	-	acetolactate synthase 3 regulatory subunit
40.16	MEAN

3.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.