IslandPathversion 1.0

IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.16 STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
351	 39.70	0	422019..422348	+	109	126640466	-	A1S_0389	-	hypothetical protein
352	 40.54	0	422851..423183	-	110	126640467	-	A1S_0390	-	putative type III effector
353	 37.65	0	423436..423690	-	84	126640468	-	A1S_0391	-	50S ribosomal protein L31 type B
354	 39.35	0	423792..424904	-	370	126640469	-	A1S_0392	-	putative ABC1 protein
355	 43.93	+1	425624..426595	+	323	126640470	-	A1S_0393	-	putative acyl-CoA dehydrogenase
356	 43.93	+1	426898..427878	+	326	126640471	-	A1S_0394	-	putative acyl-CoA dehydrogenase
357	 42.39	0	427913..429148	-	411	126640472	-	A1S_0395	-	Na+-driven multidrug efflux pump
358	 41.73	0	429293..429709	-	138	126640473	-	A1S_0396	-	hypothetical protein
359	 40.21	0	430052..431026	+	324	126640474	-	A1S_0397	-	putative oxidase; putative coproporphyrinogen III oxidase
360	 41.88	0	431078..431662	-	194	126640475	-	A1S_0398	-	putative short-chain dehydrogenase
361	 38.61	0	432237..432842	+	201	126640476	-	A1S_0399	-	LysR family transcriptional regulator
362	 41.97	0	433311..435152	-	613	126640477	-	A1S_0402	-	acyl-CoA synthetase
363	 44.18	+1	435345..438470	-	1041	126640478	-	A1S_0403	-	ribonuclease E
364	 41.33	0	440490..441002	+	170	126640479	-	A1S_0406	-	putative phosphoglycolate phosphatase protein
365	 39.45	0	441151..441771	+	206	126640480	-	A1S_0407	-	putative transcriptional regulator
366	 40.40	0	441932..442426	+	164	126640481	-	A1S_0408	-	putative glutathione S-transferase
367	 39.43	0	442486..442977	-	163	126640482	-	A1S_0409	-	hypothetical protein
368	 35.45	-1	443427..444086	-	219	126640483	-	A1S_0410	-	hca cluster transcriptional activator
369	 43.43	0	445225..446115	+	296	126640484	-	A1S_0411	-	putative Zn-dependent hydrolases
370	 44.04	+1	446182..448227	-	681	126640485	-	A1S_0412	-	catalase
371	 43.74	+1	448854..451064	-	736	126640486	-	A1S_0413	-	phosphoenolpyruvate-protein phosphotransferase
372	 46.17	+1	451234..451677	-	147	126640487	-	A1S_0414	-	dinucleoside polyphosphate hydrolase
373	 39.29	0	452016..452552	+	178	126640488	-	A1S_0415	-	haloacid dehalogenase-like hydrolase
374	 41.00	0	452557..453417	-	286	126640489	-	A1S_0416	-	LysR family transcriptional regulator
375	 43.79	+1	454012..455445	+	477	126640490	-	A1S_0417	-	isopropylmalate isomerase large subunit
376	 38.27	0	455464..456111	+	215	126640491	leuD	A1S_0418	-	isopropylmalate isomerase small subunit
377	 40.20	0	456305..456814	+	169	126640492	-	A1S_0419	-	hypothetical protein
378	 42.92	0	456945..457925	+	326	126640493	-	A1S_0420	-	3-isopropylmalate dehydrogenase
379	 42.34	0	458975..459196	-	73	126640494	-	A1S_0421	-	protein chain initiation factor IF-1
380	 42.15	0	459701..460471	+	256	126640495	-	A1S_0422	-	AraC family transcriptional regulator
381	 43.04	0	460491..461108	-	205	126640496	truA	A1S_0423	-	tRNA pseudouridine synthase A
382	 40.40	0	461303..462208	-	301	126640497	-	A1S_0424	-	putative L-asparaginase I (AnsA)
383	 37.10	0	462333..463367	-	344	126640498	-	A1S_0425	-	hypothetical protein
384	 39.53	0	463652..464893	-	413	126640499	-	A1S_0426	-	hypothetical protein
385	 42.72	0	465165..466283	-	372	126640500	-	A1S_0427	-	aspartate-semialdehyde dehydrogenase
386	 38.84	0	466614..467594	+	326	126640501	-	A1S_0428	-	hypothetical protein
387	 37.77	0	468443..469570	+	375	126640502	-	A1S_0429	-	DAACS family glutamate:aspartate symporter
388	 42.27	0	469633..470628	-	331	126640503	-	A1S_0430	-	putative glycosyltransferase
389	 40.81	0	470999..471841	-	280	126640504	-	A1S_0431	-	lipid A biosynthesis lauroyl acyltransferase
390	 40.68	0	472054..472638	-	194	126640505	-	A1S_0432	-	putative transporter protein
391	 42.37	0	472832..474535	-	567	126640506	-	A1S_0433	-	transport protein Uup
392	 34.96	-1	474775..475020	+	81	126640507	-	A1S_0434	-	hypothetical protein
393	 35.50	-1	474779..475009	-	76	126640508	-	A1S_0435	-	hypothetical protein
394	 38.76	0	475068..475823	-	251	126640509	-	A1S_0436	-	putative Zn-dependent oxidoreductase
395	 38.78	0	476244..476555	+	103	126640510	-	A1S_0437	-	hypothetical protein
396	 45.98	+1	476805..477152	+	115	126640511	-	A1S_0438	-	hypothetical protein
397	 42.37	0	477458..479824	+	788	126640512	-	A1S_0439	-	DNA topoisomerase I
398	 40.15	0	480011..480670	+	219	126640513	-	A1S_0440	-	hypothetical protein
399	 38.85	0	480964..481380	+	138	126640514	-	A1S_0441	-	hypothetical protein
400	 41.26	0	481497..483476	+	659	126640515	-	A1S_0442	-	putative ATP-dependent DNA helicase (PcrA)
401	 37.55	0	483529..483789	+	86	126640516	-	A1S_0443	-	putative RNA-binding protein
402	 39.22	0	484228..484584	+	118	126640517	-	A1S_0444	-	hypothetical protein
403	 39.78	0	484697..484975	+	92	126640518	-	A1S_0445	-	hypothetical protein
404	 41.39	0	485012..486526	-	504	126640519	-	A1S_0446	-	CPA2 family Na+/H+ antiporter
405	 35.26	-1	486869..487024	-	51	126640520	rpmG	A1S_0447	-	50S ribosomal protein L33
406	 45.99	+1	487037..487273	-	78	126640521	rpmB	A1S_0448	-	50S ribosomal protein L28
407	 40.81	0	487441..488670	-	409	126640522	-	A1S_0449	-	coniferyl aldehyde dehydrogenase (CALDH)
408	 40.31	0	489179..489694	+	171	126640523	-	A1S_0450	-	TetR family transcriptional regulator
409	 38.14	0	489925..490632	+	235	126640524	-	A1S_0451	-	formyltetrahydrofolate deformylase
410	 43.53	0	491270..491779	+	169	126640525	-	A1S_0452	-	hypothetical protein
411	 42.75	0	491893..492444	+	183	126640526	-	A1S_0453	-	putative biopolymer transport protein (ExbB)
412	 42.01	0	492480..492848	+	122	126640527	-	A1S_0454	-	putative biopolymer transport protein (ExbD)
413	 36.09	-1	492909..493271	-	120	126640528	-	A1S_0455	-	peptide methionine sulfoxide reductase
414	 37.46	0	493531..494403	-	290	126640529	-	A1S_0456	-	hypothetical protein
415	 40.34	0	494601..495071	-	156	126640530	-	A1S_0457	-	dihydrofolate reductase
416	 40.86	0	495155..495898	-	247	126640531	thyA	A1S_0458	-	thymidylate synthase
417	 36.43	-1	496493..496750	-	85	126640532	-	A1S_0459	-	hypothetical protein
418	 44.98	+1	496926..497672	-	248	126640533	-	A1S_0460	-	prolipoprotein diacylglyceryl transferase
419	 43.59	0	497876..498616	+	246	126640534	-	A1S_0461	-	hypothetical protein
420	 42.30	0	498660..500711	-	683	126640535	-	A1S_0462	-	putative phosphatase
421	 39.95	0	501201..503300	-	699	126640536	-	A1S_0463	-	putative alkaline phosphatase
422	 36.29	-1	503555..504265	-	236	126640537	-	A1S_0464	-	Sec-independent protein translocase protein
423	 39.73	0	504322..504759	-	145	126640538	-	A1S_0465	-	Sec-independent protein translocase protein
424	 36.07	-1	504771..504989	-	72	126640539	-	A1S_0466	-	Sec-independent protein translocase protein
425	 40.49	0	505377..506117	+	246	126640540	-	A1S_0467	-	putative permease
426	 41.52	0	506310..506834	-	174	126640541	-	A1S_0468	-	hypothetical protein
427	 44.94	+1	507102..507644	-	180	126640542	-	A1S_0469	-	hypothetical protein
428	 40.72	0	507686..508186	-	166	126640543	-	A1S_0470	-	methionine biosynthesis protein
429	 43.18	0	508279..509334	-	351	126640544	metX	A1S_0471	-	homoserine O-acetyltransferase
430	 40.43	0	509522..511183	-	553	126640545	-	A1S_0472	-	2-isopropylmalate synthase
431	 39.10	0	511678..512301	-	207	126640546	-	A1S_0473	-	putative hydroxylase
432	 39.35	0	512467..514677	-	736	126640547	-	A1S_0474	-	putative ferric siderophore receptor protein
433	 40.24	0	515434..516504	+	356	126640548	tig	A1S_0475	-	trigger factor
434	 41.03	0	516835..517302	+	155	126640549	-	A1S_0476	-	ATP-dependent Clp protease proteolytic subunit
435	 39.27	0	517623..518717	+	364	126640550	clpX	A1S_0477	-	ATP-dependent protease ATP-binding subunit
436	 37.80	0	519000..519581	+	193	126640551	-	A1S_0478	-	putative signal peptide
437	 34.44	-1	519606..519785	-	59	126640552	-	A1S_0479	-	putative signal peptide
438	 43.68	+1	520304..521734	-	476	126640553	-	A1S_0480	-	fumarate hydratase
439	 44.09	+1	522059..524140	-	693	126640554	-	A1S_0481	-	phosphate acetyltransferase
440	 42.99	0	524247..525509	-	420	126640555	-	A1S_0482	-	acetate kinase (propionate kinase)
441	 46.57	+1	526374..528065	+	563	126640556	-	A1S_0483	-	phosphogluconate dehydratase
442	 46.18	+1	528131..528706	+	191	126640557	-	A1S_0484	-	hypothetical protein
443	 41.71	0	528968..530245	+	425	126640558	-	A1S_0485	-	GntP family high-affinity gluconate permease
444	 41.34	0	530402..530788	+	128	126640559	-	A1S_0486	-	thermoresistant gluconokinase
445	 42.53	0	532692..533789	-	365	126640560	proA	A1S_0489	-	gamma-glutamyl phosphate reductase
446	 41.31	0	534392..535570	+	392	126640561	-	A1S_0490	-	putative hydrolase
447	 37.87	0	535624..536394	-	256	126640562	-	A1S_0491	-	hypothetical protein
448	 45.23	+1	536791..537723	-	310	126640563	-	A1S_0492	-	beta-hexosaminidase
449	 42.21	0	538069..540186	+	705	126640564	-	A1S_0493	-	carboxy-terminal protease
450	 42.20	0	540487..541095	+	202	126640565	-	A1S_0494	-	putative glycosyl transferase
40.16	MEAN

3.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.