IslandPathversion 1.0

IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.16 STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
306	 42.55	0	368467..371157	-	896	126640421	-	A1S_0343	-	putative monovalent cation/H+ antiporter subunit A
307	 40.86	0	371631..372893	-	420	126640422	-	A1S_0344	-	putative ATP binding site
308	 43.26	0	373037..374416	-	459	126640423	-	A1S_0345	-	putative DNA helicase
309	 41.56	0	374549..375229	-	226	126640424	-	A1S_0346	-	hypothetical protein
310	 42.04	0	375476..376612	-	378	126640425	-	A1S_0347	-	putative oxidoreductase; putative flavoprotein monooxygenase
311	 42.95	0	376914..378410	-	498	126640426	-	A1S_0348	-	2-octaprenylphenol hydroxylase of ubiquinone biosynthetic pathway
312	 40.21	0	378546..379112	-	188	126640427	-	A1S_0349	-	hypothetical protein
313	 42.72	0	379226..380173	-	315	126640428	-	A1S_0350	-	S-adenosylmethionine: 2-DMK methyltransferase and 2-octaprenyl-6-methoxy-14-benzoquinone methylase
314	 38.75	0	380322..380912	-	196	126640429	-	A1S_0351	-	hypothetical protein
315	 41.30	0	381362..382654	+	430	126640430	-	A1S_0352	-	polyphosphate-AMP phosphotransferase
316	 38.75	0	382677..383045	-	122	126640431	-	A1S_0353	-	hypothetical protein
317	 42.73	0	383529..386264	+	911	126640432	-	A1S_0354	-	exonuclease V gamma chain
318	 40.88	0	386422..386991	+	189	126640433	-	A1S_0355	-	exonuclease V gamma chain
319	 44.70	+1	387109..387504	+	131	126640434	-	A1S_0356	-	exonuclease V beta chain
320	 41.55	0	387699..390692	+	997	126640435	-	A1S_0357	-	exonuclease V beta chain
321	 42.42	0	391002..392552	+	516	126640436	-	A1S_0358	-	exonuclease V alpha subunit
322	 42.21	0	393269..394474	-	401	126640437	-	A1S_0359	-	putative beta-lactamase
323	 44.07	+1	394780..395049	+	89	126640438	rpsO	A1S_0360	-	30S ribosomal protein S15
324	 42.03	0	395406..397394	+	662	126640439	-	A1S_0361	-	polynucleotide phosphorylase/polyadenylase
325	 38.60	0	397665..398690	+	341	126640440	-	A1S_0362	-	putative magnesium Mg(2+)/cobalt Co(2+) transport protein
326	 42.28	0	398937..399182	-	81	126640441	-	A1S_0363	-	hypothetical protein
327	 41.82	0	399278..400102	-	274	126640442	-	A1S_0364	-	curved DNA-binding protein
328	 35.27	-1	400385..400951	-	188	126640443	-	A1S_0365	-	putative amino-acid efflux transmembrane protein
329	 41.63	0	401134..401904	-	256	126640444	-	A1S_0366	-	heat shock protein Hsp33
330	 42.36	0	402175..403857	-	560	126640445	-	A1S_0367	-	glutathione-regulated potassium-efflux system protein (K(+)/H(+) antiporter)
331	 43.54	0	404093..406042	-	649	126640446	-	A1S_0368	-	ATP-dependent primosomal protein N'
332	 43.21	0	406674..407675	+	333	126640447	-	A1S_0369	-	general secretion pathway protein F
333	 42.81	0	407732..408280	+	182	126640448	-	A1S_0370	-	general secretion pathway protein G
334	 33.67	-1	408595..408891	+	98	126640449	-	A1S_0371	-	hypothetical protein
335	 37.97	0	409138..409374	+	78	126640450	-	A1S_0372	-	protein secretion chaperone
336	 42.19	0	409376..410629	-	417	126640451	-	A1S_0373	-	apolipoprotein N-acyltransferase copper homeostasis protein
337	 41.25	0	410695..410934	-	79	126640452	-	A1S_0374	-	apolipoprotein N-acyltransferase copper homeostasis protein
338	 40.71	0	410931..411635	-	234	126640453	-	A1S_0375	-	magnesium and cobalt efflux protein
339	 41.09	0	411955..412212	+	85	126640454	-	A1S_0376	-	hypothetical protein
340	 43.35	0	413439..414536	-	365	126640455	-	A1S_0378	-	EsvG
341	 39.74	0	414789..415334	+	181	126640456	-	A1S_0379	-	hypothetical protein
342	 41.50	0	415479..416249	+	256	126640457	-	A1S_0380	-	glutamate racemase
343	 39.28	0	416433..417374	+	313	126640458	-	A1S_0381	-	hypothetical protein
344	 40.97	0	417679..418464	+	261	126640459	-	A1S_0382	-	ferrochelatase
345	 43.49	0	418572..419132	+	186	126640460	-	A1S_0383	-	hypothetical protein
346	 45.13	+1	419129..419323	-	64	126640462	-	A1S_0385	-	putative Zinc-binding protein
347	 46.46	+1	419235..419333	+	32	126640461	-	A1S_0384	-	putative Zinc-binding protein
348	 40.00	0	419600..420049	+	149	126640463	-	A1S_0386	-	putative methyltransferase
349	 41.80	0	420087..421244	+	385	126640464	-	A1S_0387	-	putative flavoprotein
350	 41.61	0	421322..421732	+	136	126640465	-	A1S_0388	-	hypothetical protein
351	 39.70	0	422019..422348	+	109	126640466	-	A1S_0389	-	hypothetical protein
352	 40.54	0	422851..423183	-	110	126640467	-	A1S_0390	-	putative type III effector
353	 37.65	0	423436..423690	-	84	126640468	-	A1S_0391	-	50S ribosomal protein L31 type B
354	 39.35	0	423792..424904	-	370	126640469	-	A1S_0392	-	putative ABC1 protein
355	 43.93	+1	425624..426595	+	323	126640470	-	A1S_0393	-	putative acyl-CoA dehydrogenase
356	 43.93	+1	426898..427878	+	326	126640471	-	A1S_0394	-	putative acyl-CoA dehydrogenase
357	 42.39	0	427913..429148	-	411	126640472	-	A1S_0395	-	Na+-driven multidrug efflux pump
358	 41.73	0	429293..429709	-	138	126640473	-	A1S_0396	-	hypothetical protein
359	 40.21	0	430052..431026	+	324	126640474	-	A1S_0397	-	putative oxidase; putative coproporphyrinogen III oxidase
360	 41.88	0	431078..431662	-	194	126640475	-	A1S_0398	-	putative short-chain dehydrogenase
361	 38.61	0	432237..432842	+	201	126640476	-	A1S_0399	-	LysR family transcriptional regulator
362	 41.97	0	433311..435152	-	613	126640477	-	A1S_0402	-	acyl-CoA synthetase
363	 44.18	+1	435345..438470	-	1041	126640478	-	A1S_0403	-	ribonuclease E
364	 41.33	0	440490..441002	+	170	126640479	-	A1S_0406	-	putative phosphoglycolate phosphatase protein
365	 39.45	0	441151..441771	+	206	126640480	-	A1S_0407	-	putative transcriptional regulator
366	 40.40	0	441932..442426	+	164	126640481	-	A1S_0408	-	putative glutathione S-transferase
367	 39.43	0	442486..442977	-	163	126640482	-	A1S_0409	-	hypothetical protein
368	 35.45	-1	443427..444086	-	219	126640483	-	A1S_0410	-	hca cluster transcriptional activator
369	 43.43	0	445225..446115	+	296	126640484	-	A1S_0411	-	putative Zn-dependent hydrolases
370	 44.04	+1	446182..448227	-	681	126640485	-	A1S_0412	-	catalase
371	 43.74	+1	448854..451064	-	736	126640486	-	A1S_0413	-	phosphoenolpyruvate-protein phosphotransferase
372	 46.17	+1	451234..451677	-	147	126640487	-	A1S_0414	-	dinucleoside polyphosphate hydrolase
373	 39.29	0	452016..452552	+	178	126640488	-	A1S_0415	-	haloacid dehalogenase-like hydrolase
374	 41.00	0	452557..453417	-	286	126640489	-	A1S_0416	-	LysR family transcriptional regulator
375	 43.79	+1	454012..455445	+	477	126640490	-	A1S_0417	-	isopropylmalate isomerase large subunit
376	 38.27	0	455464..456111	+	215	126640491	leuD	A1S_0418	-	isopropylmalate isomerase small subunit
377	 40.20	0	456305..456814	+	169	126640492	-	A1S_0419	-	hypothetical protein
378	 42.92	0	456945..457925	+	326	126640493	-	A1S_0420	-	3-isopropylmalate dehydrogenase
379	 42.34	0	458975..459196	-	73	126640494	-	A1S_0421	-	protein chain initiation factor IF-1
380	 42.15	0	459701..460471	+	256	126640495	-	A1S_0422	-	AraC family transcriptional regulator
381	 43.04	0	460491..461108	-	205	126640496	truA	A1S_0423	-	tRNA pseudouridine synthase A
382	 40.40	0	461303..462208	-	301	126640497	-	A1S_0424	-	putative L-asparaginase I (AnsA)
383	 37.10	0	462333..463367	-	344	126640498	-	A1S_0425	-	hypothetical protein
384	 39.53	0	463652..464893	-	413	126640499	-	A1S_0426	-	hypothetical protein
385	 42.72	0	465165..466283	-	372	126640500	-	A1S_0427	-	aspartate-semialdehyde dehydrogenase
386	 38.84	0	466614..467594	+	326	126640501	-	A1S_0428	-	hypothetical protein
387	 37.77	0	468443..469570	+	375	126640502	-	A1S_0429	-	DAACS family glutamate:aspartate symporter
388	 42.27	0	469633..470628	-	331	126640503	-	A1S_0430	-	putative glycosyltransferase
389	 40.81	0	470999..471841	-	280	126640504	-	A1S_0431	-	lipid A biosynthesis lauroyl acyltransferase
390	 40.68	0	472054..472638	-	194	126640505	-	A1S_0432	-	putative transporter protein
391	 42.37	0	472832..474535	-	567	126640506	-	A1S_0433	-	transport protein Uup
392	 34.96	-1	474775..475020	+	81	126640507	-	A1S_0434	-	hypothetical protein
393	 35.50	-1	474779..475009	-	76	126640508	-	A1S_0435	-	hypothetical protein
394	 38.76	0	475068..475823	-	251	126640509	-	A1S_0436	-	putative Zn-dependent oxidoreductase
395	 38.78	0	476244..476555	+	103	126640510	-	A1S_0437	-	hypothetical protein
396	 45.98	+1	476805..477152	+	115	126640511	-	A1S_0438	-	hypothetical protein
397	 42.37	0	477458..479824	+	788	126640512	-	A1S_0439	-	DNA topoisomerase I
398	 40.15	0	480011..480670	+	219	126640513	-	A1S_0440	-	hypothetical protein
399	 38.85	0	480964..481380	+	138	126640514	-	A1S_0441	-	hypothetical protein
400	 41.26	0	481497..483476	+	659	126640515	-	A1S_0442	-	putative ATP-dependent DNA helicase (PcrA)
401	 37.55	0	483529..483789	+	86	126640516	-	A1S_0443	-	putative RNA-binding protein
402	 39.22	0	484228..484584	+	118	126640517	-	A1S_0444	-	hypothetical protein
403	 39.78	0	484697..484975	+	92	126640518	-	A1S_0445	-	hypothetical protein
404	 41.39	0	485012..486526	-	504	126640519	-	A1S_0446	-	CPA2 family Na+/H+ antiporter
405	 35.26	-1	486869..487024	-	51	126640520	rpmG	A1S_0447	-	50S ribosomal protein L33
40.16	MEAN

3.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.