IslandPathversion 1.0

IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.16 STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3249	 43.03	0	3858714..3859724	+	336	162286717	-	A1S_3357	-	allantoicase
3250	 39.43	0	3859700..3860224	+	174	126643365	-	A1S_3358	-	ureidoglycolate hydrolase
3251	 42.74	0	3860346..3862163	-	605	126643366	-	A1S_3359	-	DNA topoisomerase IV subunit B
3252	 40.29	0	3862247..3862735	-	162	126643367	-	A1S_3360	-	putative esterase
3253	 41.22	0	3863040..3864383	+	447	126643368	-	A1S_3361	-	hypothetical protein
3254	 29.46	-2	3865087..3865602	+	171	126643369	-	A1S_3362	-	hypothetical protein
3255	 29.49	-2	3869916..3870539	-	207	126643370	-	A1S_3363	-	membrane metalloendopeptidases proteins
3256	 41.76	0	3870878..3873679	-	933	126643371	-	A1S_3364	-	putative VGR-related protein
3257	 42.05	0	3873991..3874449	-	152	126643372	-	A1S_3365	-	disulfide bond formation protein
3258	 41.27	0	3874847..3876031	-	394	126643373	-	A1S_3366	-	gamma-glutamate-cysteine ligase
3259	 37.82	0	3876452..3876808	+	118	126643374	-	A1S_3367	-	hypothetical protein
3260	 43.90	+1	3877063..3877431	+	122	126643375	-	A1S_3368	-	hypothetical protein
3261	 43.19	0	3877508..3878755	+	415	126643376	-	A1S_3369	-	hypothetical protein
3262	 42.40	0	3878846..3879937	+	363	126643377	-	A1S_3370	-	putative aminotransferase
3263	 41.59	0	3880176..3881411	+	411	126643378	-	A1S_3371	-	MATE family drug transporter
3264	 40.66	0	3881468..3882340	-	290	126643379	-	A1S_3372	-	putative short-chain dehydrogenase
3265	 39.92	0	3882654..3883169	+	171	126643380	-	A1S_3373	-	TetR family transcriptional regulator
3266	 44.24	+1	3883425..3883589	+	54	126643381	-	A1S_3374	-	positive pho regulon response regulator
3267	 44.30	+1	3883670..3884134	+	154	126643382	-	A1S_3375	-	positive pho regulon response regulator
3268	 41.35	0	3884318..3885502	+	394	126643383	-	A1S_3376	-	two-component sensor
3269	 41.67	0	3885572..3886699	-	375	126643384	-	A1S_3377	-	hypothetical protein
3270	 39.69	0	3886990..3887760	-	256	126643385	-	A1S_3378	-	phosphatidylserine decarboxylase
3271	 45.73	+1	3887838..3888434	-	198	126643386	-	A1S_3379	-	thiosulfate sulfurtransferase
3272	 38.87	0	3888837..3889991	-	384	126643387	-	A1S_3380	-	nicotinate phosphoribosyltransferase
3273	 40.63	0	3890192..3890602	-	136	126643388	-	A1S_3381	-	AnkB protein
3274	 39.51	0	3890860..3892122	-	420	126643389	-	A1S_3382	-	catalase
3275	 42.42	0	3892611..3892973	+	120	126643390	-	A1S_3383	-	D-tyrosyl-tRNA deacylase
3276	 39.02	0	3893012..3893398	-	128	126643391	-	A1S_3384	-	hypothetical protein
3277	 42.56	0	3893746..3894081	-	111	126643392	-	A1S_3385	-	hypothetical protein
3278	 43.93	+1	3894492..3895652	-	386	126643393	-	A1S_3386	-	phosphoserine phosphatase
3279	 40.81	0	3895919..3897082	+	387	126643394	-	A1S_3387	-	hypothetical protein
3280	 44.29	+1	3897385..3898443	+	352	126643395	-	A1S_3388	-	hypothetical protein
3281	 41.91	0	3898518..3898925	+	135	126643396	-	A1S_3389	-	67-dimethyl-8-ribityllumazine synthase
3282	 42.28	0	3899010..3899378	+	122	126643397	-	A1S_3390	-	transcription termination L factor
3283	 42.53	0	3899616..3900311	+	231	126643398	-	A1S_3391	-	thiamin-monophosphate kinase
3284	 38.64	0	3900334..3900804	+	156	126643399	-	A1S_3392	-	phosphatidylglycerophosphatase A
3285	 41.13	0	3901073..3901585	+	170	126643400	-	A1S_3393	-	hypothetical protein
3286	 41.87	0	3901827..3902189	+	120	126643401	-	A1S_3394	-	hypothetical protein
3287	 38.58	0	3902466..3903170	+	234	126643402	-	A1S_3395	-	glucosamine--fructose-6-phosphate aminotransferase
3288	 41.01	0	3903352..3904041	+	229	126643403	-	A1S_3396	-	glucosamine--fructose-6-phosphate aminotransferase
3289	 35.33	-1	3907084..3907635	+	183	126643404	-	A1S_3397	-	hypothetical protein
3290	 40.04	0	3907622..3908188	-	188	126643405	-	A1S_3398	-	glutamate racemase
3291	 38.18	0	3908446..3909084	-	212	126643406	-	A1S_3399	-	VirP protein
3292	 41.79	0	3909183..3910163	-	326	126643407	-	A1S_3400	-	hypothetical protein
3293	 33.96	-1	3910325..3910960	-	211	126643408	-	A1S_3401	-	hypothetical protein
3294	 41.72	0	3911262..3912215	-	317	126643409	-	A1S_3402	-	arginase/agmatinase/formimionoglutamate hydrolase
3295	 45.74	+1	3912193..3913143	-	316	126643410	-	A1S_3403	-	imidazolonepropionase
3296	 43.19	0	3913450..3914748	-	432	126643411	-	A1S_3404	-	amino acid APC transporter
3297	 43.99	+1	3914927..3916183	-	418	126643412	-	A1S_3405	-	histidine ammonia-lyase
3298	 47.47	+2	3916553..3916849	-	98	126643413	-	A1S_3406	-	urocanate hydratase
3299	 44.20	+1	3916899..3918131	-	410	126643414	-	A1S_3407	-	urocanase
3300	 39.65	0	3918482..3918940	-	152	126643415	-	A1S_3408	-	hypothetical protein
3301	 41.49	0	3919054..3919629	-	191	126643416	-	A1S_3409	-	histidine utilization repressor
3302	 35.95	-1	3920324..3921277	+	317	126643417	-	A1S_3410	-	putative acyltransferase
3303	 44.72	+1	3921304..3922392	-	362	126643418	-	A1S_3411	-	G3E family GTPase
3304	 42.58	0	3922712..3923284	-	190	126643419	-	A1S_3412	-	hypothetical protein
3305	 40.84	0	3923559..3924770	-	403	126643420	-	A1S_3413	-	APC family aromatic amino acid transporter
3306	 41.59	0	3925306..3926613	+	435	126643421	-	A1S_3414	-	fumarylacetoacetase
3307	 39.32	0	3926765..3927232	+	155	126643422	-	A1S_3415	-	maleylacetoacetate isomerase
3308	 38.25	0	3927331..3927798	+	155	126643423	-	A1S_3416	-	glyoxalase/bleomycin resistance protein/dioxygenase
3309	 40.30	0	3928217..3928876	+	219	126643424	-	A1S_3417	-	regulatory proteins IclR
3310	 39.05	0	3928942..3929763	-	273	126643425	-	A1S_3418	-	4-hydroxyphenylpyruvate dioxygenase
3311	 40.78	0	3930681..3930989	+	102	126643426	-	A1S_3419	-	hypothetical protein
3312	 40.69	0	3931010..3932191	-	393	126643427	-	A1S_3420	-	MATE family drug transporter
3313	 43.86	+1	3932532..3933329	-	265	126643428	-	A1S_3421	-	putative transporter; putative sodium/bile acid transporter family protein
3314	 41.88	0	3933525..3934121	-	198	126643429	-	A1S_3422	-	hypothetical protein
3315	 42.36	0	3934673..3935392	+	239	126643430	-	A1S_3423	-	dihydrodipicolinate synthase
3316	 43.47	0	3935567..3936010	+	147	126643431	-	A1S_3424	-	putative lipoprotein-34 precursor (NlpB)
3317	 38.80	0	3936218..3936766	+	182	126643432	-	A1S_3425	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
3318	 42.86	0	3937448..3938287	+	279	126643433	-	A1S_3426	-	formate/nitrate transporter
3319	 42.26	0	3938303..3939568	-	421	162286716	-	A1S_3427	-	recombination factor protein RarA
3320	 42.79	0	3939727..3940614	-	295	126643435	-	A1S_3428	-	putative glucose dehydrogenase precursor
3321	 42.90	0	3940937..3941239	-	100	126643436	-	A1S_3429	-	hypothetical protein
3322	 43.39	0	3942121..3942657	+	178	126643437	-	A1S_3430	-	putative dienelactone hydrolase
3323	 42.17	0	3942957..3943205	+	82	126643438	-	A1S_3431	-	putative histidine triad family protein
3324	 43.19	0	3943460..3944413	+	317	126643439	-	A1S_3432	-	A/G specific adenine glycosylase
3325	 44.84	+1	3944545..3944961	+	138	126643440	-	A1S_3433	-	putative peptidase
3326	 41.06	0	3944971..3945216	+	81	126643441	-	A1S_3434	-	hypothetical protein
3327	 40.79	0	3945352..3945807	+	151	126643442	-	A1S_3435	-	3-methyl-adenine DNA glycosylase I
3328	 45.92	+1	3946017..3946874	+	285	126643443	-	A1S_3436	-	putative alcohol dehydrogenase
3329	 41.09	0	3946877..3948049	-	390	126643444	-	A1S_3437	-	hypothetical protein
3330	 39.68	0	3948750..3949553	-	267	126643445	-	A1S_3438	-	putative transcription activator
3331	 40.30	0	3949773..3950576	+	267	126643446	dkgB	A1S_3439	-	2,5-diketo-D-gluconate reductase B
3332	 45.76	+1	3950581..3951771	+	396	126643447	-	A1S_3440	-	MFS family transporter
3333	 40.52	0	3951812..3952354	-	180	126643448	-	A1S_3441	-	putative signal peptide
3334	 45.97	+1	3952517..3953173	-	218	126643449	-	A1S_3442	-	dihydrodipicolinate reductase
3335	 44.25	+1	3953985..3955010	-	341	126643450	-	A1S_3443	-	heat shock protein Hsp40
3336	 38.32	0	3955202..3955522	-	106	126643451	-	A1S_3444	-	hypothetical protein
3337	 44.11	+1	3955719..3957221	-	500	126643452	-	A1S_3445	-	RND family cation/multidrug efflux pump
3338	 43.18	0	3957311..3958702	-	463	126643453	-	A1S_3446	-	RND family cation/multidrug efflux pump
3339	 45.58	+1	3958843..3959838	-	331	126643454	-	A1S_3447	-	RND efflux transporter
3340	 38.95	0	3960201..3960716	+	171	126643455	-	A1S_3448	-	putative transcriptional regulator
3341	 42.87	0	3960887..3963571	+	894	126643456	-	A1S_3449	-	phosphoenolpyruvate carboxylase
3342	 43.22	0	3963995..3964621	+	208	126643457	-	A1S_3450	-	uracil transport protein
3343	 36.43	-1	3964780..3965166	+	128	126643458	-	A1S_3451	-	uracil transport protein
3344	 41.28	0	3965495..3966136	+	213	126643459	-	A1S_3452	-	putative transcriptional regulator
3345	 42.52	0	3966145..3966819	-	224	126643460	-	A1S_3453	-	hypothetical protein
3346	 39.39	0	3966955..3968010	-	351	126643461	-	A1S_3454	-	hypothetical protein
3347	 43.62	0	3968558..3970345	-	595	126643462	-	A1S_3455	-	dihydroxy-acid dehydratase
3348	 42.55	0	3970994..3971698	+	234	126643463	-	A1S_3456	-	methionyl-tRNA formyltransferase
40.16	MEAN

3.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.