IslandPathversion 1.0

IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.16 STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3179	 45.11	+1	3777195..3777695	-	166	126643294	-	A1S_3287	-	RecBCD nuclease ssDNA-binding protein
3180	 43.15	0	3777828..3779192	-	454	126643295	-	A1S_3288	-	MFS family transporter
3181	 41.46	0	3779339..3780322	-	327	126643296	-	A1S_3289	-	putative integral membrane protein
3182	 41.61	0	3780888..3781358	+	156	126643297	-	A1S_3290	-	EsvF2
3183	 42.14	0	3781408..3781725	-	105	126643298	-	A1S_3291	-	alginate biosynthetic membrane
3184	 37.46	0	3781802..3782092	-	96	126643299	-	A1S_3292	-	hypothetical protein
3185	 44.94	+1	3782220..3783089	-	289	126643300	-	A1S_3293	-	putative NADPH:quinone reductase and related Zn-dependent oxidoreductase
3186	 42.58	0	3783201..3783611	-	136	126643301	-	A1S_3294	-	TetR/AcrR family transcriptional regulator
3187	 43.87	+1	3784307..3786934	+	875	126643302	-	A1S_3295	-	excinuclease ABC subunit A
3188	 36.09	-1	3786968..3788674	-	568	126643303	-	A1S_3296	-	putative GGDEF family protein
3189	 40.76	0	3789880..3790566	+	228	126643304	-	A1S_3297	-	putative outer membrane protein
3190	 40.85	0	3790633..3792309	-	558	126643305	-	A1S_3298	-	putative high affinity choline transport protein (Bet-like)
3191	 39.80	0	3792766..3793368	-	200	126643306	-	A1S_3299	-	hypothetical protein
3192	 42.91	0	3793628..3795277	-	549	126643307	actP	A1S_3300	-	acetate permease
3193	 39.04	0	3795345..3795677	-	110	126643308	-	A1S_3301	-	hypothetical protein
3194	 44.13	+1	3795969..3799358	+	1129	126643309	-	A1S_3302	-	putative two-component sensor
3195	 40.59	0	3799734..3800519	+	261	126643310	-	A1S_3303	-	hypothetical protein
3196	 39.96	0	3800562..3801089	-	175	126643311	-	A1S_3304	-	putative two-component response regulator
3197	 42.14	0	3801589..3802326	+	245	126643312	-	A1S_3305	-	NADH-dependent FMN reductase
3198	 41.64	0	3802581..3803483	+	300	126643313	-	A1S_3306	-	putative sulfonate monooxygenase (MsuD)
3199	 33.69	-1	3803575..3803853	-	92	126643314	-	A1S_3307	-	putative transcriptional regulator (Lrp-like)
3200	 35.91	-1	3804094..3804636	+	180	126643315	-	A1S_3308	-	putative isochorismatase
3201	 46.02	+1	3804683..3806416	-	577	126643316	-	A1S_3309	-	acetyl-CoA synthetase
3202	 36.99	0	3807011..3807502	+	163	126643317	-	A1S_3310	-	hypothetical protein
3203	 38.33	0	3807615..3808595	+	326	126643318	-	A1S_3311	-	hypothetical protein
3204	 40.15	0	3808575..3809117	-	180	126643319	-	A1S_3312	-	hypothetical protein
3205	 41.69	0	3809279..3810331	-	350	126643320	-	A1S_3313	-	3-deoxy-D-manno-2-octulosonate transferase
3206	 42.65	0	3810740..3811684	-	314	126643321	-	A1S_3314	-	xenobiotic reductase
3207	 40.26	0	3811827..3812129	-	100	126643322	-	A1S_3315	-	ArsR family transcriptional regulator
3208	 42.29	0	3812343..3813179	-	278	126643323	-	A1S_3316	-	peptide chain release factor 2
3209	 41.54	0	3813816..3814583	+	255	126643324	-	A1S_3317	-	putative outer membrane protein
3210	 42.38	0	3814631..3816145	-	504	126643325	-	A1S_3318	-	ssDNA exonuclease
3211	 45.17	+1	3816329..3816835	-	168	126643326	-	A1S_3319	-	pyridoxamine 5'-phosphate oxidase
3212	 40.69	0	3816996..3818150	-	384	126643327	-	A1S_3320	-	phosphoglucosamine mutase
3213	 44.29	+1	3818483..3819805	-	440	126643328	-	A1S_3321	-	IMP dehydrogenase
3214	 45.93	+1	3820085..3820354	-	89	126643329	-	A1S_3322	-	ferredoxin (putative)
3215	 37.84	0	3820542..3821162	-	206	126643330	-	A1S_3323	-	putative flavoprotein
3216	 38.73	0	3821631..3823262	+	543	126643331	-	A1S_3324	-	putative ferric siderophore receptor protein
3217	 40.78	0	3823441..3823722	+	93	126643332	-	A1S_3325	-	putative ferric siderophore receptor protein
3218	 39.36	0	3823781..3824311	-	176	126643333	-	A1S_3326	-	hypothetical protein
3219	 45.34	+1	3825026..3826915	-	629	126643334	-	A1S_3327	-	dihydrolipoamide S-acetyltransferase E2 component of the pyruvate dehydrogenase complex
3220	 42.94	0	3827017..3829659	-	880	126643335	aceE	A1S_3328	-	pyruvate dehydrogenase subunit E1
3221	 42.66	0	3829985..3830488	-	167	126643336	-	A1S_3329	-	EsvJ
3222	 37.55	0	3831323..3832153	-	276	126643337	lpxC	A1S_3330	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
3223	 42.67	0	3832336..3833406	-	356	126643338	-	A1S_3331	-	cell division protein FtsZ
3224	 44.30	+1	3833676..3834833	-	385	126643339	-	A1S_3332	-	cell division protein
3225	 41.38	0	3834999..3835619	-	206	126643340	-	A1S_3333	-	cell division protein
3226	 43.44	0	3835856..3836716	-	286	126643341	-	A1S_3334	-	D-alanine-D-alanine ligase B
3227	 41.87	0	3836820..3838166	-	448	126643342	-	A1S_3335	-	UDP-N-acetylmuramate--alanine ligase
3228	 42.35	0	3838280..3839233	-	317	126643343	-	A1S_3336	-	UDP-N-acetylglucosamine:N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
3229	 41.21	0	3839615..3840541	-	308	126643344	-	A1S_3337	-	glutathione synthetase
3230	 37.09	0	3840720..3840932	+	70	126643345	-	A1S_3338	-	hypothetical protein
3231	 41.01	0	3841228..3843351	+	707	126643346	-	A1S_3339	-	putative ferric siderophore receptor protein
3232	 40.86	0	3844030..3844680	-	216	126643347	pyrE	A1S_3340	-	orotate phosphoribosyltransferase
3233	 42.17	0	3844854..3845543	+	229	126643348	-	A1S_3341	-	catabolite repression control protein
3234	 36.75	0	3845999..3846349	+	116	126643349	-	A1S_3342	-	putative arsenate reductase
3235	 40.44	0	3846338..3846787	-	149	126643350	-	A1S_3343	-	hypothetical protein
3236	 39.65	0	3847078..3847884	+	268	126643351	-	A1S_3344	-	esterase
3237	 36.84	0	3848171..3849253	+	360	126643352	-	A1S_3345	-	GGDEF domain-containing protein
3238	 42.15	0	3849245..3850117	-	290	126643353	-	A1S_3346	-	thiol:disulfide interchange protein precursor
3239	 40.15	0	3850345..3851004	-	219	126643354	-	A1S_3347	-	thiol:disulfide interchange protein precursor
3240	 38.22	0	3851090..3851641	-	183	126643355	-	A1S_3348	-	putative signal peptide
3241	 41.37	0	3851870..3852292	-	140	126643356	-	A1S_3349	-	hypothetical protein
3242	 38.06	0	3852574..3852933	-	119	126643357	-	A1S_3350	-	hypothetical protein
3243	 41.94	0	3853423..3854142	+	239	126643358	-	A1S_3351	-	putative deacetylase
3244	 40.87	0	3854242..3854745	+	167	126643359	-	A1S_3352	-	putative OHCU decarboxylase
3245	 38.31	0	3854805..3855065	+	86	126643360	-	A1S_3353	-	putative transthyretin-like protein precursor
3246	 42.98	0	3855183..3856457	+	424	126643361	-	A1S_3354	-	xanthine/uracil permease family protein
3247	 38.58	0	3856771..3857304	+	177	126643362	-	A1S_3355	-	hypothetical protein
3248	 43.57	0	3857357..3858313	-	318	126643363	-	A1S_3356	-	putative flavoprotein monooxygenase
3249	 43.03	0	3858714..3859724	+	336	162286717	-	A1S_3357	-	allantoicase
3250	 39.43	0	3859700..3860224	+	174	126643365	-	A1S_3358	-	ureidoglycolate hydrolase
3251	 42.74	0	3860346..3862163	-	605	126643366	-	A1S_3359	-	DNA topoisomerase IV subunit B
3252	 40.29	0	3862247..3862735	-	162	126643367	-	A1S_3360	-	putative esterase
3253	 41.22	0	3863040..3864383	+	447	126643368	-	A1S_3361	-	hypothetical protein
3254	 29.46	-2	3865087..3865602	+	171	126643369	-	A1S_3362	-	hypothetical protein
3255	 29.49	-2	3869916..3870539	-	207	126643370	-	A1S_3363	-	membrane metalloendopeptidases proteins
3256	 41.76	0	3870878..3873679	-	933	126643371	-	A1S_3364	-	putative VGR-related protein
3257	 42.05	0	3873991..3874449	-	152	126643372	-	A1S_3365	-	disulfide bond formation protein
3258	 41.27	0	3874847..3876031	-	394	126643373	-	A1S_3366	-	gamma-glutamate-cysteine ligase
3259	 37.82	0	3876452..3876808	+	118	126643374	-	A1S_3367	-	hypothetical protein
3260	 43.90	+1	3877063..3877431	+	122	126643375	-	A1S_3368	-	hypothetical protein
3261	 43.19	0	3877508..3878755	+	415	126643376	-	A1S_3369	-	hypothetical protein
3262	 42.40	0	3878846..3879937	+	363	126643377	-	A1S_3370	-	putative aminotransferase
3263	 41.59	0	3880176..3881411	+	411	126643378	-	A1S_3371	-	MATE family drug transporter
3264	 40.66	0	3881468..3882340	-	290	126643379	-	A1S_3372	-	putative short-chain dehydrogenase
3265	 39.92	0	3882654..3883169	+	171	126643380	-	A1S_3373	-	TetR family transcriptional regulator
3266	 44.24	+1	3883425..3883589	+	54	126643381	-	A1S_3374	-	positive pho regulon response regulator
3267	 44.30	+1	3883670..3884134	+	154	126643382	-	A1S_3375	-	positive pho regulon response regulator
3268	 41.35	0	3884318..3885502	+	394	126643383	-	A1S_3376	-	two-component sensor
3269	 41.67	0	3885572..3886699	-	375	126643384	-	A1S_3377	-	hypothetical protein
3270	 39.69	0	3886990..3887760	-	256	126643385	-	A1S_3378	-	phosphatidylserine decarboxylase
3271	 45.73	+1	3887838..3888434	-	198	126643386	-	A1S_3379	-	thiosulfate sulfurtransferase
3272	 38.87	0	3888837..3889991	-	384	126643387	-	A1S_3380	-	nicotinate phosphoribosyltransferase
3273	 40.63	0	3890192..3890602	-	136	126643388	-	A1S_3381	-	AnkB protein
3274	 39.51	0	3890860..3892122	-	420	126643389	-	A1S_3382	-	catalase
3275	 42.42	0	3892611..3892973	+	120	126643390	-	A1S_3383	-	D-tyrosyl-tRNA deacylase
3276	 39.02	0	3893012..3893398	-	128	126643391	-	A1S_3384	-	hypothetical protein
3277	 42.56	0	3893746..3894081	-	111	126643392	-	A1S_3385	-	hypothetical protein
3278	 43.93	+1	3894492..3895652	-	386	126643393	-	A1S_3386	-	phosphoserine phosphatase
40.16	MEAN

3.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.