IslandPathversion 1.0

IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.16 STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3135	 38.48	0	3733727..3734134	-	135	126643250	-	A1S_3242	-	putative transmembrane protein
3136	 40.00	0	3734156..3734695	-	179	126643251	-	A1S_3243	-	putative cold shock protein
3137	 42.82	0	3734798..3735682	-	294	126643252	-	A1S_3244	-	homoserine kinase
3138	 44.86	+1	3736065..3736619	+	184	126643253	-	A1S_3245	-	imidazole glycerol phosphate synthase cyclase subunit
3139	 43.60	0	3736661..3737176	-	171	126643254	-	A1S_3246	-	hypothetical protein
3140	 41.61	0	3737544..3738413	+	289	126643255	-	A1S_3247	-	AraC family transcriptional regulator
3141	 45.65	+1	3738546..3739235	+	229	126643256	-	A1S_3248	-	glycerol uptake facilitator
3142	 34.57	-1	3739413..3739655	-	80	126643257	-	A1S_3250	-	hypothetical protein
3143	 36.49	-1	3739701..3740144	-	147	126643258	-	A1S_3251	-	amino acid transporter LysE
3144	 40.31	0	3740397..3741500	-	367	126643259	-	A1S_3252	-	putative DNA/RNA non-specific endonuclease G protein
3145	 51.35	+2	3741732..3742175	+	147	126643260	-	A1S_3253	-	putative signal peptide
3146	 43.13	0	3742231..3743925	-	564	126643261	-	A1S_3254	-	KUP family potassium transport system low affinity
3147	 35.56	-1	3744681..3745265	+	194	126643262	-	A1S_3255	-	putative transcriptional regulator AraC/XylS family protein
3148	 38.21	0	3745526..3746017	+	163	126643263	-	A1S_3256	-	isoprenoid biosynthesis protein
3149	 32.21	-2	3746951..3747664	-	237	126643264	-	A1S_3257	-	hypothetical protein
3150	 39.25	0	3748080..3748637	-	185	126643265	-	A1S_3258	-	putative NAD(P)H oxidoreductase
3151	 38.10	0	3748839..3749090	+	83	126643266	-	A1S_3259	-	putative transcriptional regulator YdzF
3152	 35.27	-1	3749118..3749324	+	68	126643267	-	A1S_3260	-	hypothetical protein
3153	 36.81	0	3750265..3751155	-	296	126643268	-	A1S_3261	-	hypothetical protein
3154	 34.42	-1	3752597..3752872	-	91	126643269	-	A1S_3262	-	putative transcriptional regulator
3155	 35.49	-1	3753023..3753439	+	138	126643270	-	A1S_3263	-	putative cytoplasmic protein
3156	 35.17	-1	3753512..3753892	-	126	126643271	-	A1S_3264	-	putative transcriptional regulator
3157	 38.74	0	3755913..3756578	+	221	126643272	-	A1S_3265	-	hypothetical protein
3158	 45.49	+1	3756750..3757037	+	95	126643273	-	A1S_3266	-	aldo/keto reductase
3159	 45.79	+1	3757122..3757691	+	189	126643274	-	A1S_3267	-	hypothetical protein
3160	 43.23	0	3757737..3758039	-	100	126643275	-	A1S_3268	-	hypothetical protein
3161	 40.78	0	3758307..3758843	-	178	126643276	-	A1S_3269	-	hypothetical protein
3162	 38.31	0	3759210..3760013	+	267	126643277	-	A1S_3270	-	putative permease
3163	 44.48	+1	3760010..3760852	-	280	126643278	-	A1S_3271	-	LysR family transcriptional regulator
3164	 44.18	+1	3761069..3762313	+	414	126643279	-	A1S_3272	-	MFS family transporter
3165	 37.76	0	3762824..3763207	+	127	126643280	-	A1S_3273	-	putative peptide signal
3166	 40.57	0	3763436..3763822	-	128	126643281	-	A1S_3274	-	glutathione-dependent formaldehyde-activating GFA
3167	 36.36	-1	3763870..3764628	-	252	126643282	-	A1S_3275	-	putative methyltransferase
3168	 41.35	0	3764702..3765973	-	423	126643283	-	A1S_3276	-	hypothetical protein
3169	 42.84	0	3766440..3767312	-	290	126643284	-	A1S_3277	-	putative pirin-like protein
3170	 40.03	0	3767590..3768216	+	208	126643285	-	A1S_3278	-	isochorismatase superfamily hydrolase
3171	 40.09	0	3768324..3769211	+	295	126643286	-	A1S_3279	-	putative transcription regulator protein
3172	 45.99	+1	3769316..3770524	-	402	126643287	-	A1S_3280	-	NADP+-dependent succinate semialdehyde dehydrogenase
3173	 44.66	+1	3770761..3771987	-	408	126643288	-	A1S_3281	-	4-aminobutyrate aminotransferase PLP-dependent
3174	 45.98	+1	3772318..3773709	+	463	126643289	-	A1S_3282	-	GntR family transcriptional regulator
3175	 42.48	0	3773774..3775216	-	480	126643290	-	A1S_3283	-	gamma-aminobutyrate permease
3176	 45.34	+1	3775522..3776004	-	160	126643291	-	A1S_3284	-	putative transcriptional regulator
3177	 42.00	0	3776166..3776834	+	222	126643292	-	A1S_3285	-	hypothetical protein
3178	 43.21	0	3776831..3777154	+	107	126643293	-	A1S_3286	-	putative inner membrane protein
3179	 45.11	+1	3777195..3777695	-	166	126643294	-	A1S_3287	-	RecBCD nuclease ssDNA-binding protein
3180	 43.15	0	3777828..3779192	-	454	126643295	-	A1S_3288	-	MFS family transporter
3181	 41.46	0	3779339..3780322	-	327	126643296	-	A1S_3289	-	putative integral membrane protein
3182	 41.61	0	3780888..3781358	+	156	126643297	-	A1S_3290	-	EsvF2
3183	 42.14	0	3781408..3781725	-	105	126643298	-	A1S_3291	-	alginate biosynthetic membrane
3184	 37.46	0	3781802..3782092	-	96	126643299	-	A1S_3292	-	hypothetical protein
3185	 44.94	+1	3782220..3783089	-	289	126643300	-	A1S_3293	-	putative NADPH:quinone reductase and related Zn-dependent oxidoreductase
3186	 42.58	0	3783201..3783611	-	136	126643301	-	A1S_3294	-	TetR/AcrR family transcriptional regulator
3187	 43.87	+1	3784307..3786934	+	875	126643302	-	A1S_3295	-	excinuclease ABC subunit A
3188	 36.09	-1	3786968..3788674	-	568	126643303	-	A1S_3296	-	putative GGDEF family protein
3189	 40.76	0	3789880..3790566	+	228	126643304	-	A1S_3297	-	putative outer membrane protein
3190	 40.85	0	3790633..3792309	-	558	126643305	-	A1S_3298	-	putative high affinity choline transport protein (Bet-like)
3191	 39.80	0	3792766..3793368	-	200	126643306	-	A1S_3299	-	hypothetical protein
3192	 42.91	0	3793628..3795277	-	549	126643307	actP	A1S_3300	-	acetate permease
3193	 39.04	0	3795345..3795677	-	110	126643308	-	A1S_3301	-	hypothetical protein
3194	 44.13	+1	3795969..3799358	+	1129	126643309	-	A1S_3302	-	putative two-component sensor
3195	 40.59	0	3799734..3800519	+	261	126643310	-	A1S_3303	-	hypothetical protein
3196	 39.96	0	3800562..3801089	-	175	126643311	-	A1S_3304	-	putative two-component response regulator
3197	 42.14	0	3801589..3802326	+	245	126643312	-	A1S_3305	-	NADH-dependent FMN reductase
3198	 41.64	0	3802581..3803483	+	300	126643313	-	A1S_3306	-	putative sulfonate monooxygenase (MsuD)
3199	 33.69	-1	3803575..3803853	-	92	126643314	-	A1S_3307	-	putative transcriptional regulator (Lrp-like)
3200	 35.91	-1	3804094..3804636	+	180	126643315	-	A1S_3308	-	putative isochorismatase
3201	 46.02	+1	3804683..3806416	-	577	126643316	-	A1S_3309	-	acetyl-CoA synthetase
3202	 36.99	0	3807011..3807502	+	163	126643317	-	A1S_3310	-	hypothetical protein
3203	 38.33	0	3807615..3808595	+	326	126643318	-	A1S_3311	-	hypothetical protein
3204	 40.15	0	3808575..3809117	-	180	126643319	-	A1S_3312	-	hypothetical protein
3205	 41.69	0	3809279..3810331	-	350	126643320	-	A1S_3313	-	3-deoxy-D-manno-2-octulosonate transferase
3206	 42.65	0	3810740..3811684	-	314	126643321	-	A1S_3314	-	xenobiotic reductase
3207	 40.26	0	3811827..3812129	-	100	126643322	-	A1S_3315	-	ArsR family transcriptional regulator
3208	 42.29	0	3812343..3813179	-	278	126643323	-	A1S_3316	-	peptide chain release factor 2
3209	 41.54	0	3813816..3814583	+	255	126643324	-	A1S_3317	-	putative outer membrane protein
3210	 42.38	0	3814631..3816145	-	504	126643325	-	A1S_3318	-	ssDNA exonuclease
3211	 45.17	+1	3816329..3816835	-	168	126643326	-	A1S_3319	-	pyridoxamine 5'-phosphate oxidase
3212	 40.69	0	3816996..3818150	-	384	126643327	-	A1S_3320	-	phosphoglucosamine mutase
3213	 44.29	+1	3818483..3819805	-	440	126643328	-	A1S_3321	-	IMP dehydrogenase
3214	 45.93	+1	3820085..3820354	-	89	126643329	-	A1S_3322	-	ferredoxin (putative)
3215	 37.84	0	3820542..3821162	-	206	126643330	-	A1S_3323	-	putative flavoprotein
3216	 38.73	0	3821631..3823262	+	543	126643331	-	A1S_3324	-	putative ferric siderophore receptor protein
3217	 40.78	0	3823441..3823722	+	93	126643332	-	A1S_3325	-	putative ferric siderophore receptor protein
3218	 39.36	0	3823781..3824311	-	176	126643333	-	A1S_3326	-	hypothetical protein
3219	 45.34	+1	3825026..3826915	-	629	126643334	-	A1S_3327	-	dihydrolipoamide S-acetyltransferase E2 component of the pyruvate dehydrogenase complex
3220	 42.94	0	3827017..3829659	-	880	126643335	aceE	A1S_3328	-	pyruvate dehydrogenase subunit E1
3221	 42.66	0	3829985..3830488	-	167	126643336	-	A1S_3329	-	EsvJ
3222	 37.55	0	3831323..3832153	-	276	126643337	lpxC	A1S_3330	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
3223	 42.67	0	3832336..3833406	-	356	126643338	-	A1S_3331	-	cell division protein FtsZ
3224	 44.30	+1	3833676..3834833	-	385	126643339	-	A1S_3332	-	cell division protein
3225	 41.38	0	3834999..3835619	-	206	126643340	-	A1S_3333	-	cell division protein
3226	 43.44	0	3835856..3836716	-	286	126643341	-	A1S_3334	-	D-alanine-D-alanine ligase B
3227	 41.87	0	3836820..3838166	-	448	126643342	-	A1S_3335	-	UDP-N-acetylmuramate--alanine ligase
3228	 42.35	0	3838280..3839233	-	317	126643343	-	A1S_3336	-	UDP-N-acetylglucosamine:N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
3229	 41.21	0	3839615..3840541	-	308	126643344	-	A1S_3337	-	glutathione synthetase
3230	 37.09	0	3840720..3840932	+	70	126643345	-	A1S_3338	-	hypothetical protein
3231	 41.01	0	3841228..3843351	+	707	126643346	-	A1S_3339	-	putative ferric siderophore receptor protein
3232	 40.86	0	3844030..3844680	-	216	126643347	pyrE	A1S_3340	-	orotate phosphoribosyltransferase
3233	 42.17	0	3844854..3845543	+	229	126643348	-	A1S_3341	-	catabolite repression control protein
3234	 36.75	0	3845999..3846349	+	116	126643349	-	A1S_3342	-	putative arsenate reductase
40.16	MEAN

3.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.