IslandPathversion 1.0

IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.16 STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3061	 41.46	0	3645920..3646288	-	122	126643176	rplS	A1S_3161	-	50S ribosomal protein L19
3062	 41.84	0	3646496..3647059	-	187	126643177	-	A1S_3162	-	tRNA (guanine-1-)-methyltransferase
3063	 45.05	+1	3647282..3647725	-	147	126643178	-	A1S_3163	-	16S rRNA processing protein
3064	 44.84	+1	3647850..3648101	-	83	126643179	-	A1S_3164	-	30S ribosomal protein S16
3065	 37.12	0	3648248..3648643	-	131	126643180	-	A1S_3165	-	pilin like competence factor
3066	 37.53	0	3648670..3649098	-	142	126643181	-	A1S_3166	-	pilin like competence factor
3067	 39.77	0	3649165..3652956	-	1263	126643182	-	A1S_3167	-	pilus assembly protein tip-associated adhesin PilY1
3068	 40.07	0	3653846..3654661	-	271	126643183	-	A1S_3168	-	pilus assembly protein PilW
3069	 40.54	0	3656045..3656863	-	272	126643184	-	A1S_3169	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
3070	 39.52	0	3657118..3657747	+	209	126643185	-	A1S_3170	-	guanylate kinase
3071	 41.22	0	3657820..3658098	+	92	126643186	-	A1S_3171	-	RNA polymerase omega subunit
3072	 38.98	0	3658499..3660412	+	637	126643187	-	A1S_3172	-	hypothetical protein
3073	 40.36	0	3660533..3660916	+	127	126643188	-	A1S_3173	-	hypothetical protein
3074	 43.08	0	3661126..3661320	+	64	126643189	-	A1S_3174	-	putative regulatory or redox component complexing with Bfr in iron storage and mobility (BFD)
3075	 35.20	-1	3661655..3662029	+	124	126643190	-	A1S_3175	-	bacterioferritin
3076	 35.13	-1	3662008..3663621	-	537	126643191	-	A1S_3176	-	hypothetical protein
3077	 38.71	0	3663852..3664316	-	154	126643192	-	A1S_3177	-	fimbrial protein
3078	 37.97	0	3664658..3665218	-	186	126643193	-	A1S_3178	-	hypothetical protein
3079	 42.21	0	3665212..3666045	-	277	126643194	-	A1S_3179	-	hypothetical protein
3080	 40.37	0	3666316..3666912	-	198	126643195	-	A1S_3180	-	putative signal peptide
3081	 39.79	0	3667037..3667795	-	252	126643196	-	A1S_3181	-	hypothetical protein
3082	 43.49	0	3668098..3669426	-	442	126643197	gltD	A1S_3182	-	glutamate synthase subunit beta
3083	 43.23	0	3669590..3673975	-	1461	126643198	gltB	A1S_3185	-	glutamate synthase subunit alpha
3084	 39.49	0	3674526..3675158	-	210	126643199	-	A1S_3186	-	putative signal peptide
3085	 40.51	0	3675417..3676391	-	324	126643200	-	A1S_3187	-	3-dehydroquinate synthase
3086	 40.45	0	3676528..3677019	-	163	126643201	-	A1S_3190	-	shikimate kinase
3087	 38.03	0	3677109..3679196	-	695	126643202	-	A1S_3191	-	putative outer membrane protein (ComQ)
3088	 45.35	+1	3679342..3679782	-	146	126643203	-	A1S_3192	-	putative lipoprotein (ComL)
3089	 38.34	0	3679880..3680518	-	212	126643204	-	A1S_3193	-	putative membrane protein (ComO)
3090	 42.68	0	3680617..3681087	-	156	126643205	-	A1S_3194	-	putative membrane protein (ComN)
3091	 42.09	0	3681258..3682193	-	311	126643206	-	A1S_3195	-	putative membrane protein ComM
3092	 41.68	0	3682554..3683966	+	470	126643207	-	A1S_3196	-	putative penicillin binding protein (PonA)
3093	 42.17	0	3683983..3685035	+	350	126643208	-	A1S_3197	-	putative penicillin binding protein (PonA)
3094	 40.07	0	3685053..3685616	-	187	126643209	-	A1S_3198	-	23S ribosomal RNA G745 methyltransferase
3095	 38.89	0	3685880..3686131	-	83	126643210	-	A1S_3199	-	hypothetical protein
3096	 43.97	+1	3686273..3686620	-	115	126643211	-	A1S_3200	-	phospho-N-acetylmuramoyl-pentapeptide transferase
3097	 39.48	0	3686839..3687261	-	140	126643212	-	A1S_3201	-	phospho-N-acetylmuramoyl-pentapeptide transferase
3098	 43.38	0	3687391..3688584	-	397	126643213	-	A1S_3202	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
3099	 40.88	0	3688799..3690043	-	414	126643214	-	A1S_3203	-	UDP-N-acetylmuramoylalanyl-D-glutamate-2 6-diaminopimelate ligase
3100	 41.75	0	3690302..3692059	-	585	126643215	-	A1S_3204	-	septum formation penicillin binding protein 3, peptidoglycan synthetase
3101	 41.29	0	3692146..3692409	-	87	126643216	-	A1S_3205	-	cell division protein
3102	 43.15	0	3692478..3693149	-	223	126643217	-	A1S_3206	-	S-adenosylmethionine methyltransferase
3103	 40.41	0	3693624..3694457	-	277	126643218	-	A1S_3207	-	sulfate transport protein
3104	 37.16	0	3695061..3695321	+	86	126643219	-	A1S_3208	-	putative peptide signal
3105	 42.38	0	3695438..3695647	+	69	126643220	-	A1S_3209	-	glutamyl-tRNA synthetase
3106	 40.64	0	3695785..3696948	+	387	126643221	-	A1S_3210	-	glutamyl-tRNA synthetase
3107	 41.76	0	3697380..3698732	+	450	126643222	-	A1S_3211	-	S-methylmethionine APC transporter
3108	 34.35	-1	3698852..3699736	+	294	126643223	-	A1S_3212	-	hypothetical protein
3109	 39.00	0	3701411..3701710	+	99	126643224	-	A1S_3213	-	hypothetical protein
3110	 38.11	0	3701729..3702523	-	264	126643225	-	A1S_3214	-	cation efflux system protein
3111	 43.07	0	3702818..3705889	-	1023	126643226	-	A1S_3217	-	RND divalent metal cation efflux transporter
3112	 41.35	0	3705966..3706976	-	336	126643227	-	A1S_3218	-	EsvF1
3113	 43.10	0	3707186..3708496	-	436	126643228	-	A1S_3219	-	RND efflux transporter
3114	 38.62	0	3708656..3709033	-	125	126643229	-	A1S_3220	-	cation efflux system protein
3115	 42.70	0	3710661..3712283	-	540	126643230	-	A1S_3221	-	putative ABC transporter ATP-binding protein
3116	 41.82	0	3712791..3713897	+	368	126643231	-	A1S_3222	-	homocysteine synthase
3117	 41.56	0	3714019..3714966	-	315	126643232	-	A1S_3223	-	EsvA
3118	 40.24	0	3716523..3717188	+	221	126643233	-	A1S_3224	-	acyl coenzyme A reductase
3119	 39.84	0	3717256..3719391	-	711	126643234	-	A1S_3225	-	putative sulfate permease
3120	 43.53	0	3719748..3721433	-	561	126643235	-	A1S_3227	-	putative RNA binding protein
3121	 41.62	0	3721522..3722076	-	184	126643236	-	A1S_3228	-	putative RNA binding protein
3122	 44.83	+1	3722918..3723517	+	199	126643237	-	A1S_3229	-	two-component response regulator
3123	 40.48	0	3723649..3724992	+	447	126643238	-	A1S_3230	-	sensory histidine kinase (OmpR)
3124	 42.07	0	3725268..3726698	+	476	126643239	-	A1S_3231	-	putative acetyl-CoA hydrolase/transferase
3125	 44.36	+1	3726871..3727260	+	129	126643240	-	A1S_3232	-	putative acetyltransferase
3126	 42.45	0	3727814..3728197	-	127	126643241	-	A1S_3233	-	hypothetical protein
3127	 40.93	0	3728420..3728893	+	157	126643242	-	A1S_3234	-	hypothetical protein
3128	 42.31	0	3729043..3729510	+	155	126643243	-	A1S_3235	-	imidazole glycerol phosphate synthetase glutamine amidotransferase subunit
3129	 40.34	0	3729799..3730212	+	137	126643244	-	A1S_3236	-	hypothetical protein
3130	 36.54	-1	3730380..3730940	+	186	126643245	-	A1S_3237	-	exonuclease putative
3131	 43.44	0	3731035..3731766	+	243	126643246	-	A1S_3238	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
3132	 42.03	0	3731834..3732385	-	183	126643247	-	A1S_3239	-	hypothetical protein
3133	 42.11	0	3732601..3733386	+	261	126643248	-	A1S_3240	-	hypothetical protein
3134	 33.33	-1	3733412..3733630	-	72	126643249	-	A1S_3241	-	putative polyketide synthesis monooxygenase
3135	 38.48	0	3733727..3734134	-	135	126643250	-	A1S_3242	-	putative transmembrane protein
3136	 40.00	0	3734156..3734695	-	179	126643251	-	A1S_3243	-	putative cold shock protein
3137	 42.82	0	3734798..3735682	-	294	126643252	-	A1S_3244	-	homoserine kinase
3138	 44.86	+1	3736065..3736619	+	184	126643253	-	A1S_3245	-	imidazole glycerol phosphate synthase cyclase subunit
3139	 43.60	0	3736661..3737176	-	171	126643254	-	A1S_3246	-	hypothetical protein
3140	 41.61	0	3737544..3738413	+	289	126643255	-	A1S_3247	-	AraC family transcriptional regulator
3141	 45.65	+1	3738546..3739235	+	229	126643256	-	A1S_3248	-	glycerol uptake facilitator
3142	 34.57	-1	3739413..3739655	-	80	126643257	-	A1S_3250	-	hypothetical protein
3143	 36.49	-1	3739701..3740144	-	147	126643258	-	A1S_3251	-	amino acid transporter LysE
3144	 40.31	0	3740397..3741500	-	367	126643259	-	A1S_3252	-	putative DNA/RNA non-specific endonuclease G protein
3145	 51.35	+2	3741732..3742175	+	147	126643260	-	A1S_3253	-	putative signal peptide
3146	 43.13	0	3742231..3743925	-	564	126643261	-	A1S_3254	-	KUP family potassium transport system low affinity
3147	 35.56	-1	3744681..3745265	+	194	126643262	-	A1S_3255	-	putative transcriptional regulator AraC/XylS family protein
3148	 38.21	0	3745526..3746017	+	163	126643263	-	A1S_3256	-	isoprenoid biosynthesis protein
3149	 32.21	-2	3746951..3747664	-	237	126643264	-	A1S_3257	-	hypothetical protein
3150	 39.25	0	3748080..3748637	-	185	126643265	-	A1S_3258	-	putative NAD(P)H oxidoreductase
3151	 38.10	0	3748839..3749090	+	83	126643266	-	A1S_3259	-	putative transcriptional regulator YdzF
3152	 35.27	-1	3749118..3749324	+	68	126643267	-	A1S_3260	-	hypothetical protein
3153	 36.81	0	3750265..3751155	-	296	126643268	-	A1S_3261	-	hypothetical protein
3154	 34.42	-1	3752597..3752872	-	91	126643269	-	A1S_3262	-	putative transcriptional regulator
3155	 35.49	-1	3753023..3753439	+	138	126643270	-	A1S_3263	-	putative cytoplasmic protein
3156	 35.17	-1	3753512..3753892	-	126	126643271	-	A1S_3264	-	putative transcriptional regulator
3157	 38.74	0	3755913..3756578	+	221	126643272	-	A1S_3265	-	hypothetical protein
3158	 45.49	+1	3756750..3757037	+	95	126643273	-	A1S_3266	-	aldo/keto reductase
3159	 45.79	+1	3757122..3757691	+	189	126643274	-	A1S_3267	-	hypothetical protein
3160	 43.23	0	3757737..3758039	-	100	126643275	-	A1S_3268	-	hypothetical protein
40.16	MEAN

3.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.