IslandPathversion 1.0

IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.16 STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2946	 41.21	0	3534528..3534908	+	126	126643061	-	A1S_3046	-	oligopeptidase A
2947	 41.75	0	3535310..3536581	+	423	126643062	-	A1S_3047	-	oligopeptidase A
2948	 43.81	+1	3536622..3536831	+	69	126643063	-	A1S_3048	-	hypothetical protein
2949	 40.76	0	3537423..3539522	-	699	126643064	-	A1S_3049	-	putative integral membrane protein transporter
2950	 39.28	0	3539806..3540192	-	128	126643065	-	A1S_3050	-	hypothetical protein
2951	 44.62	+1	3540451..3541389	-	312	126643066	-	A1S_3051	-	hypothetical protein
2952	 36.99	0	3542702..3542947	-	81	126643067	-	A1S_3052	-	hypothetical protein
2953	 39.81	0	3543348..3544319	+	323	126643068	-	A1S_3053	-	acyl coenzyme A dehydrogenase
2954	 38.12	0	3544369..3545685	-	438	126643069	-	A1S_3054	-	monooxygenase
2955	 41.74	0	3546041..3546361	-	106	126643070	-	A1S_3055	-	50S ribosomal protein L17
2956	 42.12	0	3546437..3547369	-	310	126643071	-	A1S_3056	-	DNA-directed RNA polymerase subunit alpha
2957	 40.43	0	3547462..3547884	-	140	126643072	-	A1S_3057	-	30S ribosomal protein S4
2958	 49.44	+2	3548101..3548367	-	88	126643073	-	A1S_3058	-	30S ribosomal protein S11
2959	 46.78	+1	3548507..3548863	-	118	126643074	rpsM	A1S_3059	-	30S ribosomal protein S13
2960	 41.03	0	3548971..3549087	-	38	126643075	rpmJ	A1S_3060	-	50S ribosomal protein L36
2961	 39.15	0	3549108..3550466	-	452	162286719	secY	A1S_3061	-	preprotein translocase subunit SecY
2962	 46.26	+1	3550473..3550913	-	146	126643077	rplO	A1S_3062	-	50S ribosomal protein L15
2963	 37.85	0	3550917..3551093	-	58	126643078	-	A1S_3063	-	50S ribosomal protein L30
2964	 45.99	+1	3551100..3551486	-	128	126643079	-	A1S_3064	-	30S ribosomal protein S5
2965	 45.54	+1	3551601..3551903	-	100	126643080	-	A1S_3065	-	50S ribosomal protein L18
2966	 42.70	0	3551966..3552424	-	152	126643081	rplF	A1S_3066	-	50S ribosomal protein L6
2967	 40.35	0	3552513..3552854	-	113	126643082	rpsH	A1S_3067	-	30S ribosomal protein S8
2968	 42.75	0	3552920..3553195	-	91	126643083	rpsN	A1S_3068	-	30S ribosomal protein S14
2969	 43.94	+1	3553235..3553696	-	153	126643084	-	A1S_3069	-	50S ribosomal protein L5
2970	 44.91	+1	3553787..3554071	-	94	126643085	rplX	A1S_3070	-	50S ribosomal protein L24
2971	 42.55	0	3554114..3554482	-	122	126643086	rplN	A1S_3071	-	50S ribosomal protein L14
2972	 41.86	0	3554575..3554832	-	85	126643087	rpsQ	A1S_3072	-	30S ribosomal protein S17
2973	 42.42	0	3554829..3555026	-	65	126643088	-	A1S_3073	-	50S ribosomal protein L29
2974	 43.30	0	3555026..3555316	-	96	126643089	rplP	A1S_3074	-	50S ribosomal protein L16
2975	 47.26	+2	3555443..3556045	-	200	126643090	-	A1S_3075	-	30S ribosomal protein S3
2976	 40.94	0	3556197..3556472	-	91	126643091	-	A1S_3076	-	50S ribosomal protein L22
2977	 45.54	+1	3556827..3557555	-	242	126643092	rplB	A1S_3077	-	50S ribosomal protein L2
2978	 38.94	0	3557663..3557983	-	106	126643093	rplW	A1S_3078	-	50S ribosomal protein L23
2979	 43.95	+1	3557980..3558582	-	200	126643094	rplD	A1S_3079	-	50S ribosomal protein L4
2980	 44.96	+1	3558594..3559238	-	214	126643095	rplC	A1S_3080	-	50S ribosomal protein L3
2981	 44.87	+1	3559290..3559601	-	103	126643096	rpsJ	A1S_3081	-	30S ribosomal protein S10
2982	 38.55	0	3559853..3560581	-	242	126643097	-	A1S_3082	-	putative glutamine amidotransferase
2983	 39.95	0	3560821..3561939	+	372	126643098	-	A1S_3083	-	putative cystathionine beta-lyase PLP-dependent
2984	 42.09	0	3562115..3563530	+	471	126643099	-	A1S_3084	-	hypothetical protein
2985	 38.96	0	3563766..3564440	+	224	126643100	-	A1S_3085	-	putative flavohemoprotein
2986	 37.70	0	3564568..3565002	+	144	126643101	-	A1S_3086	-	hypothetical protein
2987	 41.19	0	3565212..3565847	+	211	126643102	-	A1S_3087	-	GTPase EngB
2988	 40.97	0	3566241..3566921	+	226	126643103	-	A1S_3088	-	hypothetical protein
2989	 40.27	0	3566963..3568201	-	412	126643104	-	A1S_3089	-	putative proton/sodium-glutamate symport protein
2990	 43.36	0	3568335..3569222	-	295	126643105	-	A1S_3090	-	acyl-CoA thioesterase II
2991	 39.69	0	3569632..3572055	+	807	126643106	-	A1S_3091	-	glycerol-3-phosphate acyltransferase
2992	 38.49	0	3572099..3572815	-	238	126643107	-	A1S_3092	-	putative RND type efflux pump involved in aminoglycoside resistance (adeT)
2993	 33.73	-1	3573165..3573416	-	83	126643108	-	A1S_3093	-	putative nucleoside-diphosphate-sugar epimerase
2994	 39.17	0	3573394..3573804	-	136	126643109	-	A1S_3094	-	putative nucleoside-diphosphate-sugar epimerase
2995	 41.81	0	3574137..3576047	+	636	126643110	-	A1S_3095	-	ATP-dependent DNA helicase
2996	 37.53	0	3576199..3576675	+	158	126643111	-	A1S_3096	-	putative DNA transformation protein (ComF)
2997	 42.06	0	3577094..3577540	-	148	126643112	-	A1S_3097	-	putative signal peptide
2998	 40.41	0	3577833..3578708	+	291	126643113	-	A1S_3098	-	magnesium and cobalt transport protein
2999	 36.81	0	3578915..3579202	-	95	126643114	-	A1S_3099	-	putative toluene-tolerance protein (Ttg2E)
3000	 39.96	0	3579279..3579806	-	175	126643115	-	A1S_3100	-	putative toluene tolerance protein (Ttg2D)
3001	 40.92	0	3579881..3580486	-	201	126643116	-	A1S_3101	-	toluene tolerance efflux transporter
3002	 41.95	0	3580561..3581268	-	235	126643117	-	A1S_3102	-	toluene tolerance efflux transporter
3003	 44.06	+1	3581334..3582023	-	229	126643118	-	A1S_3103	-	toluene tolerance efflux transporter
3004	 46.92	+1	3582556..3584403	-	615	126643119	-	A1S_3104	-	putative ATP-dependent RNA helicase
3005	 44.40	+1	3584813..3585643	-	276	126643120	-	A1S_3105	-	inositol-1-monophosphatase
3006	 44.28	+1	3585764..3587563	-	599	126643121	-	A1S_3106	-	1-deoxy-D-xylulose-5-phosphate synthase
3007	 40.37	0	3588035..3588574	+	179	126643122	-	A1S_3107	-	GTP cyclohydrolase II
3008	 41.53	0	3588909..3589652	+	247	126643123	-	A1S_3108	-	coproporphyrinogen III oxidase
3009	 39.66	0	3589967..3590614	+	215	126643124	-	A1S_3109	-	shikimate 5-dehydrogenase
3010	 35.90	-1	3590662..3592839	-	725	126643125	-	A1S_3110	-	hypothetical protein
3011	 42.02	0	3593343..3595046	+	567	126643126	-	A1S_3111	-	putative acyl-CoA dehydrogenase
3012	 37.59	0	3595118..3595705	-	195	126643127	-	A1S_3112	-	hypothetical protein
3013	 38.43	0	3596058..3596273	+	71	126643128	-	A1S_3113	-	hypothetical protein
3014	 40.41	0	3596343..3597275	-	310	126643129	-	A1S_3114	-	hypothetical protein
3015	 35.06	-1	3597576..3598268	-	230	126643130	-	A1S_3115	-	hypothetical protein
3016	 39.62	0	3598376..3599377	-	333	126643131	-	A1S_3116	-	hypothetical protein
3017	 40.40	0	3599812..3600900	-	362	126643132	-	A1S_3117	-	putative tetA efflux pump
3018	 43.95	+1	3601468..3602343	+	291	126643133	glyQ	A1S_3118	-	glycyl-tRNA synthetase subunit alpha
3019	 41.67	0	3602625..3604412	+	595	126643134	glyS	A1S_3119	-	glycyl-tRNA synthetase subunit beta
3020	 35.00	-1	3605538..3605717	-	59	126643135	-	A1S_3120	-	hypothetical protein
3021	 35.49	-1	3606029..3607048	+	339	126643136	-	A1S_3121	-	hypothetical protein
3022	 38.14	0	3607051..3607758	-	235	126643137	-	A1S_3122	-	hypothetical protein
3023	 38.75	0	3608053..3608919	+	288	126643138	-	A1S_3123	-	putative transcriptional regulator
3024	 35.90	-1	3609176..3609487	+	103	126643139	-	A1S_3124	-	putative signal peptide
3025	 35.88	-1	3609582..3610013	+	143	126643140	-	A1S_3125	-	putative signal peptide
3026	 44.01	+1	3610110..3611411	-	433	126643141	-	A1S_3126	-	peptidase S8 and S53 subtilisin, kexin, sedolisin
3027	 40.40	0	3612358..3613164	+	268	126643142	-	A1S_3127	-	putative signal peptide
3028	 39.72	0	3613227..3613931	-	234	126643143	-	A1S_3128	-	succinylglutamate desuccinylase
3029	 41.59	0	3614214..3615557	-	447	162286718	-	A1S_3129	-	succinylarginine dihydrolase
3030	 43.95	+1	3615575..3616855	-	426	126643145	-	A1S_3130	-	succinylglutamic semialdehyde dehydrogenase
3031	 38.35	0	3617044..3617979	-	311	126643146	-	A1S_3131	-	arginine succinyltransferase
3032	 41.82	0	3618094..3618930	-	278	126643147	-	A1S_3132	-	succinylornithine transaminase
3033	 41.88	0	3619078..3619311	-	77	126643148	-	A1S_3133	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
3034	 43.46	0	3619456..3620571	-	371	126643149	-	A1S_3134	-	glutamate dehydrogenase (NAD(P)+) oxidoreductase protein
3035	 41.32	0	3621762..3623126	-	454	126643150	-	A1S_3135	-	S-methylmethionine APC transporter
3036	 35.05	-1	3623607..3624884	-	425	126643151	-	A1S_3136	-	hypothetical protein
3037	 37.39	0	3625240..3625806	+	188	126643152	-	A1S_3137	-	putative SAM-dependent methyltransferase
3038	 40.67	0	3625852..3626355	+	167	126643153	-	A1S_3138	-	putative signal peptide
3039	 36.99	0	3626405..3626923	-	172	126643154	-	A1S_3139	-	putative signal peptide
3040	 42.24	0	3627108..3627455	-	115	126643155	-	A1S_3140	-	hypothetical protein
3041	 37.69	0	3627782..3628378	+	198	126643156	-	A1S_3141	-	putative partition-related protein
3042	 37.98	0	3628630..3629619	+	329	126643157	-	A1S_3142	-	hypothetical protein
3043	 44.09	+1	3629846..3630310	+	154	126643158	-	A1S_3143	-	Cu/Zn superoxide dismutase
3044	 35.02	-1	3630638..3631585	+	315	126643159	-	A1S_3144	-	hypothetical protein
3045	 36.02	-1	3631988..3632656	+	222	126643160	-	A1S_3145	-	hypothetical protein
40.16	MEAN

3.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.