IslandPathversion 1.0

IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.16 STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2908	 36.96	0	3488116..3488667	+	183	126643023	-	A1S_3004	-	hypothetical protein
2909	 43.82	+1	3488772..3490640	-	622	126643024	-	A1S_3005	-	putative geranyl-CoA carboxylase alpha subunit
2910	 45.04	+1	3490731..3491456	-	241	126643025	-	A1S_3006	-	enoyl-CoA hydratase
2911	 43.44	0	3491578..3492606	-	342	126643026	-	A1S_3007	-	acyl-CoA dehydrogenase
2912	 44.95	+1	3492778..3494154	-	458	126643027	-	A1S_3008	-	Acetyl-CoA carboxylase
2913	 44.79	+1	3494402..3495073	-	223	126643028	-	A1S_3009	-	short chain dehydrogenase/reductase family oxidoreductase
2914	 42.37	0	3495334..3496992	-	552	126643029	-	A1S_3010	-	hypothetical protein
2915	 38.17	0	3497533..3497925	+	130	126643030	-	A1S_3011	-	putative transcriptional regulator
2916	 41.44	0	3497957..3499042	-	361	126643031	-	A1S_3012	-	acyl-CoA dehydrogenase
2917	 39.04	0	3499257..3499817	-	186	126643032	-	A1S_3013	-	hypothetical protein
2918	 34.76	-1	3499840..3500190	-	116	126643033	-	A1S_3014	-	hypothetical protein
2919	 36.25	-1	3506119..3506976	-	285	126643034	-	A1S_3016	-	hypothetical protein
2920	 38.32	0	3507205..3507846	-	213	126643035	-	A1S_3017	-	phosphatidylserine synthase
2921	 42.68	0	3508080..3508721	-	213	126643036	-	A1S_3021	-	hypothetical protein
2922	 38.83	0	3509133..3509660	+	175	126643037	-	A1S_3022	-	hypothetical protein
2923	 36.64	-1	3509833..3510255	+	140	126643038	-	A1S_3023	-	hypothetical protein
2924	 34.55	-1	3510304..3510549	-	81	126643039	-	A1S_3024	-	hypothetical protein
2925	 43.30	0	3510712..3511614	-	300	126643040	-	A1S_3025	-	malate dehydrogenase
2926	 41.67	0	3511910..3512449	-	179	126643041	-	A1S_3026	-	hypothetical protein
2927	 42.36	0	3512630..3514423	-	597	126643042	-	A1S_3027	-	putative lytic murein transglycosylase soluble
2928	 38.89	0	3514985..3515398	+	137	126643043	-	A1S_3028	-	putative tRNA-i(6)A37 modification enzyme
2929	 38.19	0	3515572..3516312	+	246	126643044	-	A1S_3029	-	putative tRNA-i(6)A37 modification enzyme
2930	 43.21	0	3516416..3517438	+	340	126643045	-	A1S_3030	-	phosphate starvation-inducible protein (PhoH-like)
2931	 37.54	0	3517592..3517924	+	110	126643046	-	A1S_3031	-	hypothetical protein
2932	 41.21	0	3518014..3518775	-	253	126643047	-	A1S_3032	-	TonB-like protein
2933	 33.97	-1	3519333..3519800	+	155	126643048	-	A1S_3033	-	hypothetical protein
2934	 36.54	-1	3520048..3520671	+	207	126643049	-	A1S_3034	-	hypothetical protein
2935	 39.45	0	3520846..3521319	+	157	126643050	-	A1S_3035	-	xanthine phosphoribosyltransferase
2936	 39.72	0	3521372..3521872	-	166	126643051	-	A1S_3036	-	tryptophan repressor binding protein
2937	 35.79	-1	3522400..3523500	+	366	126643052	-	A1S_3037	-	putative ribonuclease (Rbn)
2938	 35.84	-1	3523521..3524318	-	265	126643053	-	A1S_3038	-	hypothetical protein
2939	 39.79	0	3524562..3525335	+	257	126643054	-	A1S_3039	-	AraC family transcriptional regulator
2940	 39.33	0	3525412..3525978	-	188	126643055	-	A1S_3040	-	putative fumarylacetoacetate hydrolase family protein
2941	 36.64	-1	3526093..3526515	-	140	126643056	-	A1S_3041	-	hypothetical protein
2942	 36.79	0	3526872..3527507	+	211	126643057	-	A1S_3042	-	putative oxidoreductase
2943	 44.85	+1	3528457..3530661	+	734	126643058	-	A1S_3043	-	hypothetical protein
2944	 31.14	-2	3530721..3531131	-	136	126643059	-	A1S_3044	-	hypothetical protein
2945	 40.16	0	3532169..3534394	+	741	126643060	-	A1S_3045	-	exoribonuclease R
2946	 41.21	0	3534528..3534908	+	126	126643061	-	A1S_3046	-	oligopeptidase A
2947	 41.75	0	3535310..3536581	+	423	126643062	-	A1S_3047	-	oligopeptidase A
2948	 43.81	+1	3536622..3536831	+	69	126643063	-	A1S_3048	-	hypothetical protein
2949	 40.76	0	3537423..3539522	-	699	126643064	-	A1S_3049	-	putative integral membrane protein transporter
2950	 39.28	0	3539806..3540192	-	128	126643065	-	A1S_3050	-	hypothetical protein
2951	 44.62	+1	3540451..3541389	-	312	126643066	-	A1S_3051	-	hypothetical protein
2952	 36.99	0	3542702..3542947	-	81	126643067	-	A1S_3052	-	hypothetical protein
2953	 39.81	0	3543348..3544319	+	323	126643068	-	A1S_3053	-	acyl coenzyme A dehydrogenase
2954	 38.12	0	3544369..3545685	-	438	126643069	-	A1S_3054	-	monooxygenase
2955	 41.74	0	3546041..3546361	-	106	126643070	-	A1S_3055	-	50S ribosomal protein L17
2956	 42.12	0	3546437..3547369	-	310	126643071	-	A1S_3056	-	DNA-directed RNA polymerase subunit alpha
2957	 40.43	0	3547462..3547884	-	140	126643072	-	A1S_3057	-	30S ribosomal protein S4
2958	 49.44	+2	3548101..3548367	-	88	126643073	-	A1S_3058	-	30S ribosomal protein S11
2959	 46.78	+1	3548507..3548863	-	118	126643074	rpsM	A1S_3059	-	30S ribosomal protein S13
2960	 41.03	0	3548971..3549087	-	38	126643075	rpmJ	A1S_3060	-	50S ribosomal protein L36
2961	 39.15	0	3549108..3550466	-	452	162286719	secY	A1S_3061	-	preprotein translocase subunit SecY
2962	 46.26	+1	3550473..3550913	-	146	126643077	rplO	A1S_3062	-	50S ribosomal protein L15
2963	 37.85	0	3550917..3551093	-	58	126643078	-	A1S_3063	-	50S ribosomal protein L30
2964	 45.99	+1	3551100..3551486	-	128	126643079	-	A1S_3064	-	30S ribosomal protein S5
2965	 45.54	+1	3551601..3551903	-	100	126643080	-	A1S_3065	-	50S ribosomal protein L18
2966	 42.70	0	3551966..3552424	-	152	126643081	rplF	A1S_3066	-	50S ribosomal protein L6
2967	 40.35	0	3552513..3552854	-	113	126643082	rpsH	A1S_3067	-	30S ribosomal protein S8
2968	 42.75	0	3552920..3553195	-	91	126643083	rpsN	A1S_3068	-	30S ribosomal protein S14
2969	 43.94	+1	3553235..3553696	-	153	126643084	-	A1S_3069	-	50S ribosomal protein L5
2970	 44.91	+1	3553787..3554071	-	94	126643085	rplX	A1S_3070	-	50S ribosomal protein L24
2971	 42.55	0	3554114..3554482	-	122	126643086	rplN	A1S_3071	-	50S ribosomal protein L14
2972	 41.86	0	3554575..3554832	-	85	126643087	rpsQ	A1S_3072	-	30S ribosomal protein S17
2973	 42.42	0	3554829..3555026	-	65	126643088	-	A1S_3073	-	50S ribosomal protein L29
2974	 43.30	0	3555026..3555316	-	96	126643089	rplP	A1S_3074	-	50S ribosomal protein L16
2975	 47.26	+2	3555443..3556045	-	200	126643090	-	A1S_3075	-	30S ribosomal protein S3
2976	 40.94	0	3556197..3556472	-	91	126643091	-	A1S_3076	-	50S ribosomal protein L22
2977	 45.54	+1	3556827..3557555	-	242	126643092	rplB	A1S_3077	-	50S ribosomal protein L2
2978	 38.94	0	3557663..3557983	-	106	126643093	rplW	A1S_3078	-	50S ribosomal protein L23
2979	 43.95	+1	3557980..3558582	-	200	126643094	rplD	A1S_3079	-	50S ribosomal protein L4
2980	 44.96	+1	3558594..3559238	-	214	126643095	rplC	A1S_3080	-	50S ribosomal protein L3
2981	 44.87	+1	3559290..3559601	-	103	126643096	rpsJ	A1S_3081	-	30S ribosomal protein S10
2982	 38.55	0	3559853..3560581	-	242	126643097	-	A1S_3082	-	putative glutamine amidotransferase
2983	 39.95	0	3560821..3561939	+	372	126643098	-	A1S_3083	-	putative cystathionine beta-lyase PLP-dependent
2984	 42.09	0	3562115..3563530	+	471	126643099	-	A1S_3084	-	hypothetical protein
2985	 38.96	0	3563766..3564440	+	224	126643100	-	A1S_3085	-	putative flavohemoprotein
2986	 37.70	0	3564568..3565002	+	144	126643101	-	A1S_3086	-	hypothetical protein
2987	 41.19	0	3565212..3565847	+	211	126643102	-	A1S_3087	-	GTPase EngB
2988	 40.97	0	3566241..3566921	+	226	126643103	-	A1S_3088	-	hypothetical protein
2989	 40.27	0	3566963..3568201	-	412	126643104	-	A1S_3089	-	putative proton/sodium-glutamate symport protein
2990	 43.36	0	3568335..3569222	-	295	126643105	-	A1S_3090	-	acyl-CoA thioesterase II
2991	 39.69	0	3569632..3572055	+	807	126643106	-	A1S_3091	-	glycerol-3-phosphate acyltransferase
2992	 38.49	0	3572099..3572815	-	238	126643107	-	A1S_3092	-	putative RND type efflux pump involved in aminoglycoside resistance (adeT)
2993	 33.73	-1	3573165..3573416	-	83	126643108	-	A1S_3093	-	putative nucleoside-diphosphate-sugar epimerase
2994	 39.17	0	3573394..3573804	-	136	126643109	-	A1S_3094	-	putative nucleoside-diphosphate-sugar epimerase
2995	 41.81	0	3574137..3576047	+	636	126643110	-	A1S_3095	-	ATP-dependent DNA helicase
2996	 37.53	0	3576199..3576675	+	158	126643111	-	A1S_3096	-	putative DNA transformation protein (ComF)
2997	 42.06	0	3577094..3577540	-	148	126643112	-	A1S_3097	-	putative signal peptide
2998	 40.41	0	3577833..3578708	+	291	126643113	-	A1S_3098	-	magnesium and cobalt transport protein
2999	 36.81	0	3578915..3579202	-	95	126643114	-	A1S_3099	-	putative toluene-tolerance protein (Ttg2E)
3000	 39.96	0	3579279..3579806	-	175	126643115	-	A1S_3100	-	putative toluene tolerance protein (Ttg2D)
3001	 40.92	0	3579881..3580486	-	201	126643116	-	A1S_3101	-	toluene tolerance efflux transporter
3002	 41.95	0	3580561..3581268	-	235	126643117	-	A1S_3102	-	toluene tolerance efflux transporter
3003	 44.06	+1	3581334..3582023	-	229	126643118	-	A1S_3103	-	toluene tolerance efflux transporter
3004	 46.92	+1	3582556..3584403	-	615	126643119	-	A1S_3104	-	putative ATP-dependent RNA helicase
3005	 44.40	+1	3584813..3585643	-	276	126643120	-	A1S_3105	-	inositol-1-monophosphatase
3006	 44.28	+1	3585764..3587563	-	599	126643121	-	A1S_3106	-	1-deoxy-D-xylulose-5-phosphate synthase
3007	 40.37	0	3588035..3588574	+	179	126643122	-	A1S_3107	-	GTP cyclohydrolase II
40.16	MEAN

3.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.