IslandPathversion 1.0

IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.16 STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2826	 39.58	0	3380618..3381370	+	250	126642941	-	A1S_2918	-	DNA repair protein
2827	 40.29	0	3381525..3382343	+	272	126642942	-	A1S_2919	-	hypothetical protein
2828	 39.37	0	3382351..3383079	-	242	126642943	-	A1S_2920	-	phosphoesterase
2829	 36.26	-1	3383247..3383861	+	204	126642944	-	A1S_2921	-	putative intracellular septation protein (IspZ)
2830	 39.27	0	3383896..3384198	+	100	126642945	-	A1S_2922	-	YciI-like protein
2831	 40.27	0	3384676..3386577	+	633	126642946	-	A1S_2923	-	hypothetical protein
2832	 46.67	+1	3386629..3386943	-	104	126642947	-	A1S_2924	-	putative rhodanese-related sulfurtransferase
2833	 32.12	-2	3387035..3387364	+	109	126642948	-	A1S_2925	-	hypothetical protein
2834	 31.75	-2	3387336..3387524	+	62	126642949	-	A1S_2926	-	hypothetical protein
2835	 35.52	-1	3387684..3388961	+	425	126642950	-	A1S_2927	-	Phage integrase
2836	 31.76	-2	3390745..3393354	+	869	126642951	-	A1S_2928	-	hypothetical protein
2837	 36.30	-1	3394231..3395544	+	437	126642952	-	A1S_2929	-	putative cation efflux system protein
2838	 36.43	-1	3396085..3397635	+	516	126642953	-	A1S_2930	-	putative ferrous iron transport protein B
2839	 38.31	0	3397707..3397967	-	86	126642954	-	A1S_2931	-	hypothetical protein
2840	 41.69	0	3398103..3401033	-	976	126642955	-	A1S_2932	-	heavy metal efflux pump CzcA
2841	 40.51	0	3401263..3402600	-	445	126642956	-	A1S_2933	-	heavy metal RND efflux membrane fusion protein CzcB family protein
2842	 42.45	0	3402762..3403781	-	339	126642957	-	A1S_2934	-	CzcC family heavy metal RND efflux outer membrane protein
2843	 36.10	-1	3404654..3405448	-	264	126642958	-	A1S_2935	-	copper resistance protein B precursor
2844	 37.68	0	3405561..3407468	-	635	126642959	-	A1S_2936	-	copper resistance protein A precursor
2845	 39.02	0	3408268..3408795	+	175	126642960	-	A1S_2937	-	heavy metal response regulator
2846	 36.58	-1	3408866..3410158	+	430	126642961	-	A1S_2938	-	heavy metal sensor kinase
2847	 40.86	0	3410236..3412386	-	716	126642962	-	A1S_2939	-	ATPase E1-E2 type:copper-translocating P-type ATPase:heavy metal translocating P-type ATPase
2848	 36.42	-1	3412929..3413252	+	107	126642963	-	A1S_2940	-	copper resistance protein CopC
2849	 33.89	-1	3413308..3414201	+	297	126642964	-	A1S_2941	-	copper resistance D
2850	 44.09	+1	3414467..3415405	-	312	126642965	-	A1S_2942	-	hypothetical protein
2851	 41.84	0	3420579..3421754	+	391	126642966	-	A1S_2943	-	hypothetical protein
2852	 33.92	-1	3422376..3423224	-	282	126642967	-	A1S_2944	-	hypothetical protein
2853	 38.61	0	3427462..3428484	+	340	126642968	-	A1S_2945	-	hypothetical protein
2854	 38.46	0	3430012..3430401	+	129	126642969	-	A1S_2946	-	hypothetical protein
2855	 43.09	0	3430442..3430810	-	122	126642970	-	A1S_2947	-	hypothetical protein
2856	 42.78	0	3430866..3431045	-	59	126642971	-	A1S_2948	-	thioredoxin C-3
2857	 40.07	0	3431009..3431305	-	98	126642972	-	A1S_2949	-	hypothetical protein
2858	 38.89	0	3431306..3432097	-	263	126642973	-	A1S_2950	-	hypothetical protein
2859	 40.51	0	3432494..3432730	+	78	126642974	-	A1S_2951	-	putative sulfide dehydrogenase
2860	 35.75	-1	3434499..3435740	+	413	126642975	-	A1S_2952	-	dihydrolipoamide dehydrogenase
2861	 37.45	0	3441671..3442156	-	161	126642976	-	A1S_2955	-	peptidyl prolyl-cis-trans-isomerase rotamase
2862	 37.06	0	3442372..3443283	-	303	126642977	-	A1S_2956	-	esterase
2863	 38.87	0	3444774..3445640	-	288	126642978	-	A1S_2957	-	putative signal peptide
2864	 38.58	0	3445841..3446641	+	266	126642979	-	A1S_2958	-	putative transcriptional regulator
2865	 39.97	0	3446772..3447359	+	195	126642980	-	A1S_2959	-	Hsp 24 nucleotide exchange factor
2866	 40.68	0	3447657..3449453	+	598	126642981	-	A1S_2960	-	chaperone Hsp70
2867	 31.01	-2	3451893..3452279	+	128	126642982	-	A1S_2961	-	hypothetical protein
2868	 43.08	0	3452329..3453375	-	348	126642983	-	A1S_2962	-	putative membrane-bound lytic murein transglycosylase
2869	 42.54	0	3454309..3455199	-	296	126642984	-	A1S_2963	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
2870	 44.87	+1	3455440..3455907	-	155	126642985	-	A1S_2964	-	phosphoribosylaminoimidazole carboxylase mutase subunit
2871	 40.40	0	3456136..3456432	-	98	126642986	-	A1S_2965	-	hypothetical protein
2872	 44.26	+1	3456851..3458113	+	420	126642987	-	A1S_2966	-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
2873	 41.99	0	3458744..3459367	-	207	126642988	-	A1S_2967	-	hypothetical protein
2874	 35.68	-1	3459569..3460165	+	198	126642989	-	A1S_2968	-	hypothetical protein
2875	 40.56	0	3460541..3461440	+	299	126642990	-	A1S_2969	-	hypothetical protein
2876	 43.02	0	3462196..3463176	+	326	126642991	-	A1S_2970	-	hypothetical protein
2877	 41.00	0	3463622..3464521	+	299	126642992	-	A1S_2971	-	putative vanillate O-demethylase oxygenase subunit
2878	 43.72	+1	3464842..3465534	+	230	126642993	-	A1S_2972	-	guanine deaminase
2879	 40.32	0	3465531..3465902	+	123	126642994	-	A1S_2973	-	guanine deaminase
2880	 38.02	0	3466260..3466643	+	127	126642995	-	A1S_2974	-	hypoxanthine phosphoribosyltransferase
2881	 41.23	0	3466840..3467067	+	75	126642996	-	A1S_2975	-	hypothetical protein
2882	 37.41	0	3467120..3467683	-	187	126642997	-	A1S_2976	-	putative thiol:disulfide interchange protein
2883	 38.50	0	3467914..3468900	-	328	126642998	-	A1S_2977	-	cation diffusion facilitator family transporter
2884	 35.23	-1	3468958..3469221	+	87	126642999	-	A1S_2978	-	hypothetical protein
2885	 41.93	0	3469268..3470488	-	406	126643000	trmE	A1S_2979	-	tRNA modification GTPase TrmE
2886	 42.63	0	3470714..3471208	-	164	126643001	-	A1S_2980	-	hypothetical protein
2887	 39.78	0	3471199..3472299	-	366	126643002	-	A1S_2981	-	inner membrane protein (IMP) integration factor
2888	 42.06	0	3472479..3472799	-	106	126643003	-	A1S_2982	-	hypothetical protein
2889	 38.83	0	3472810..3473118	-	102	126643004	-	A1S_2983	-	RNase P
2890	 40.74	0	3473232..3473420	-	62	126643005	-	A1S_2984	-	50S ribosomal protein L34
2891	 33.12	-2	3474084..3474545	+	153	126643006	-	A1S_2985	-	hypothetical protein
2892	 33.79	-1	3474674..3475774	+	366	126643007	-	A1S_2986	-	hypothetical protein
2893	 35.43	-1	3475888..3476268	+	126	126643008	-	A1S_2987	-	putative lipoprotein precursor
2894	 39.51	0	3476316..3477044	-	242	126643009	-	A1S_2988	-	hypothetical protein
2895	 36.04	-1	3477951..3479057	+	368	126643010	-	A1S_2989	-	putative phospholipase D protein
2896	 40.18	0	3479058..3479612	-	184	126643011	-	A1S_2990	-	putative acyltransferase
2897	 41.05	0	3480071..3481405	+	444	126643012	-	A1S_2991	-	GTP-binding protein
2898	 37.37	0	3481448..3481819	+	123	126643013	-	A1S_2994	-	hypothetical protein
2899	 41.01	0	3481932..3482504	+	190	126643014	-	A1S_2995	-	hypothetical protein
2900	 40.15	0	3482622..3483032	+	136	126643015	-	A1S_2996	-	signal peptide protein
2901	 40.00	0	3483075..3483794	-	239	126643016	apaH	A1S_2997	-	diadenosine tetraphosphatase
2902	 41.67	0	3483915..3484478	-	187	126643017	-	A1S_2998	-	S-adenosylmethionine-6-N'N'-adenosyl
2903	 40.98	0	3484751..3485626	-	291	126643018	-	A1S_2999	-	4-hydroxythreonine-4-phosphate dehydrogenase
2904	 42.42	0	3485907..3486335	+	142	126643019	rplM	A1S_3000	-	50S ribosomal protein L13
2905	 42.25	0	3486477..3486734	+	85	126643020	-	A1S_3001	-	30S ribosomal protein S9
2906	 37.29	0	3487079..3487558	+	159	126643021	-	A1S_3002	-	stringent starvation protein A
2907	 36.46	-1	3487706..3487993	+	95	126643022	-	A1S_3003	-	stringent starvation protein B
2908	 36.96	0	3488116..3488667	+	183	126643023	-	A1S_3004	-	hypothetical protein
2909	 43.82	+1	3488772..3490640	-	622	126643024	-	A1S_3005	-	putative geranyl-CoA carboxylase alpha subunit
2910	 45.04	+1	3490731..3491456	-	241	126643025	-	A1S_3006	-	enoyl-CoA hydratase
2911	 43.44	0	3491578..3492606	-	342	126643026	-	A1S_3007	-	acyl-CoA dehydrogenase
2912	 44.95	+1	3492778..3494154	-	458	126643027	-	A1S_3008	-	Acetyl-CoA carboxylase
2913	 44.79	+1	3494402..3495073	-	223	126643028	-	A1S_3009	-	short chain dehydrogenase/reductase family oxidoreductase
2914	 42.37	0	3495334..3496992	-	552	126643029	-	A1S_3010	-	hypothetical protein
2915	 38.17	0	3497533..3497925	+	130	126643030	-	A1S_3011	-	putative transcriptional regulator
2916	 41.44	0	3497957..3499042	-	361	126643031	-	A1S_3012	-	acyl-CoA dehydrogenase
2917	 39.04	0	3499257..3499817	-	186	126643032	-	A1S_3013	-	hypothetical protein
2918	 34.76	-1	3499840..3500190	-	116	126643033	-	A1S_3014	-	hypothetical protein
2919	 36.25	-1	3506119..3506976	-	285	126643034	-	A1S_3016	-	hypothetical protein
2920	 38.32	0	3507205..3507846	-	213	126643035	-	A1S_3017	-	phosphatidylserine synthase
2921	 42.68	0	3508080..3508721	-	213	126643036	-	A1S_3021	-	hypothetical protein
2922	 38.83	0	3509133..3509660	+	175	126643037	-	A1S_3022	-	hypothetical protein
2923	 36.64	-1	3509833..3510255	+	140	126643038	-	A1S_3023	-	hypothetical protein
2924	 34.55	-1	3510304..3510549	-	81	126643039	-	A1S_3024	-	hypothetical protein
2925	 43.30	0	3510712..3511614	-	300	126643040	-	A1S_3025	-	malate dehydrogenase
40.16	MEAN

3.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.