IslandPathversion 1.0

IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.16 STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2771	 41.48	0	3309827..3312550	-	907	162286722	-	A1S_2862	-	preprotein translocase subunit SecA
2772	 36.95	0	3313102..3313599	+	165	126642887	-	A1S_2863	-	putative antioxidant protein
2773	 36.84	0	3314260..3314715	+	151	126642888	-	A1S_2864	-	hypothetical protein
2774	 36.95	0	3314766..3315290	+	174	126642889	-	A1S_2865	-	protein tyrosine/serine phosphatase
2775	 46.58	+1	3315310..3316200	-	296	126642890	-	A1S_2866	-	hypothetical protein
2776	 38.89	0	3316371..3316640	-	89	126642891	-	A1S_2867	-	hypothetical protein
2777	 41.55	0	3316703..3317530	-	275	126642892	-	A1S_2868	-	hypothetical protein
2778	 42.29	0	3317653..3318333	-	226	126642893	-	A1S_2869	-	acetylCoA carboxylase beta subunit
2779	 45.02	+1	3318546..3319349	-	267	162286721	trpA	A1S_2870	-	tryptophan synthase subunit alpha
2780	 40.94	0	3319594..3320421	-	275	126642895	-	A1S_2871	-	putative transcriptional regulator
2781	 39.87	0	3320875..3321639	+	254	126642896	-	A1S_2872	-	hypothetical protein
2782	 38.05	0	3321648..3322643	-	331	126642897	-	A1S_2873	-	hypothetical protein
2783	 38.78	0	3322681..3323121	-	146	126642898	-	A1S_2874	-	hypothetical protein
2784	 44.44	+1	3323203..3324336	-	377	126642899	-	A1S_2875	-	tryptophan synthase subunit beta
2785	 43.04	0	3324416..3324889	-	157	126642900	-	A1S_2876	-	N-(5'-phosphoribosyl)anthranilate isomerase
2786	 35.14	-1	3325495..3327318	+	607	126642901	-	A1S_2877	-	vitamin B12 receptor precursor
2787	 40.20	0	3327586..3327993	+	135	126642902	-	A1S_2878	-	hypothetical protein
2788	 38.97	0	3328195..3328779	+	194	126642903	-	A1S_2879	-	putative glycerophosphodiester phosphodiesterase
2789	 39.34	0	3328807..3329322	-	171	126642904	-	A1S_2880	-	putative signal peptide
2790	 39.56	0	3329546..3330718	+	390	126642905	-	A1S_2881	-	putative fatty acid desaturase
2791	 42.33	0	3331030..3332274	+	414	126642906	-	A1S_2882	-	hypothetical protein
2792	 40.00	0	3332338..3332937	-	199	126642907	-	A1S_2883	-	OmpR family transcriptional regulator
2793	 38.46	0	3333044..3334525	-	493	126642908	-	A1S_2884	-	two component signal transduction system kinase sensor component
2794	 45.65	+1	3334883..3335215	+	110	126642909	-	A1S_2885	-	putative signal peptide
2795	 42.16	0	3335619..3337307	+	562	126642910	-	A1S_2886	-	acyl-CoA dehydrogenase
2796	 42.44	0	3337610..3339256	+	548	126642911	-	A1S_2887	-	acyl-CoA dehydrogenase A
2797	 36.18	-1	3339471..3339857	+	128	126642912	-	A1S_2888	-	hypothetical protein
2798	 45.40	+1	3339896..3340243	-	115	126642913	-	A1S_2889	-	putative signal peptide
2799	 42.67	0	3340516..3340890	+	124	126642914	-	A1S_2890	-	hypothetical protein
2800	 39.69	0	3341085..3342296	-	403	126642915	-	A1S_2891	-	phospholipase D endonuclease domain-containing protein
2801	 41.37	0	3342624..3344477	-	617	126642916	-	A1S_2892	-	putative TonB-dependent receptor protein
2802	 36.46	-1	3344928..3345599	+	223	126642917	-	A1S_2893	-	hypothetical protein
2803	 41.98	0	3345884..3347548	+	554	126642918	aspS	A1S_2894	-	aspartyl-tRNA synthetase
2804	 35.59	-1	3347727..3347903	+	58	126642919	-	A1S_2895	-	hypothetical protein
2805	 27.94	-2	3348033..3348737	+	234	126642920	-	A1S_2896	-	hypothetical protein
2806	 30.56	-2	3348739..3349818	-	359	126642921	-	A1S_2897	-	UDP-N-acetylglucosamine 2-epimerase
2807	 39.26	0	3350964..3351773	+	269	126642922	-	A1S_2898	-	hypothetical protein
2808	 40.84	0	3351770..3352702	-	310	126642923	-	A1S_2899	-	putative glycosyltransferase
2809	 34.83	-1	3352812..3353345	-	177	126642924	-	A1S_2900	-	putative lipopolysaccharide core biosynthesis glycosyl transferase LpsC
2810	 37.72	0	3353576..3354214	-	212	126642925	-	A1S_2901	-	putative polysaccharide deacetylase
2811	 38.00	0	3354328..3355227	-	299	126642926	-	A1S_2902	-	hypothetical protein
2812	 37.96	0	3355379..3356200	-	273	126642927	-	A1S_2903	-	hypothetical protein
2813	 41.58	0	3356337..3357161	-	274	126642928	-	A1S_2904	-	branched-chain amino acid aminotransferase
2814	 42.30	0	3357288..3359852	-	854	126642929	-	A1S_2905	-	glutamine synthetase adenylyltransferase
2815	 37.90	0	3360107..3361375	-	422	126642930	-	A1S_2906	-	putative sensory transduction histidine kinase
2816	 24.87	-2	3363320..3366970	+	1216	126642931	-	A1S_2907	-	hypothetical protein
2817	 35.69	-1	3369967..3371028	-	353	126642932	-	A1S_2908	-	putative integrase
2818	 41.50	0	3371811..3372728	+	305	126642933	-	A1S_2910	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
2819	 35.76	-1	3374071..3374565	+	164	126642934	-	A1S_2911	-	hypothetical protein
2820	 41.83	0	3374828..3375874	+	348	126642935	tgt	A1S_2912	-	queuine tRNA-ribosyltransferase
2821	 39.61	0	3376048..3376302	+	84	126642936	-	A1S_2913	-	IISP family preprotein translocase
2822	 42.11	0	3376354..3378255	+	633	162286720	secD	A1S_2914	-	preprotein translocase subunit SecD
2823	 39.94	0	3378336..3378698	+	120	126642938	-	A1S_2915	-	IISP family preprotein translocase  membrane subunit
2824	 42.22	0	3378782..3379231	+	149	126642939	-	A1S_2916	-	IISP family preprotein translocase  membrane subunit
2825	 44.62	+1	3379297..3380421	-	374	126642940	-	A1S_2917	-	hypothetical protein
2826	 39.58	0	3380618..3381370	+	250	126642941	-	A1S_2918	-	DNA repair protein
2827	 40.29	0	3381525..3382343	+	272	126642942	-	A1S_2919	-	hypothetical protein
2828	 39.37	0	3382351..3383079	-	242	126642943	-	A1S_2920	-	phosphoesterase
2829	 36.26	-1	3383247..3383861	+	204	126642944	-	A1S_2921	-	putative intracellular septation protein (IspZ)
2830	 39.27	0	3383896..3384198	+	100	126642945	-	A1S_2922	-	YciI-like protein
2831	 40.27	0	3384676..3386577	+	633	126642946	-	A1S_2923	-	hypothetical protein
2832	 46.67	+1	3386629..3386943	-	104	126642947	-	A1S_2924	-	putative rhodanese-related sulfurtransferase
2833	 32.12	-2	3387035..3387364	+	109	126642948	-	A1S_2925	-	hypothetical protein
2834	 31.75	-2	3387336..3387524	+	62	126642949	-	A1S_2926	-	hypothetical protein
2835	 35.52	-1	3387684..3388961	+	425	126642950	-	A1S_2927	-	Phage integrase
2836	 31.76	-2	3390745..3393354	+	869	126642951	-	A1S_2928	-	hypothetical protein
2837	 36.30	-1	3394231..3395544	+	437	126642952	-	A1S_2929	-	putative cation efflux system protein
2838	 36.43	-1	3396085..3397635	+	516	126642953	-	A1S_2930	-	putative ferrous iron transport protein B
2839	 38.31	0	3397707..3397967	-	86	126642954	-	A1S_2931	-	hypothetical protein
2840	 41.69	0	3398103..3401033	-	976	126642955	-	A1S_2932	-	heavy metal efflux pump CzcA
2841	 40.51	0	3401263..3402600	-	445	126642956	-	A1S_2933	-	heavy metal RND efflux membrane fusion protein CzcB family protein
2842	 42.45	0	3402762..3403781	-	339	126642957	-	A1S_2934	-	CzcC family heavy metal RND efflux outer membrane protein
2843	 36.10	-1	3404654..3405448	-	264	126642958	-	A1S_2935	-	copper resistance protein B precursor
2844	 37.68	0	3405561..3407468	-	635	126642959	-	A1S_2936	-	copper resistance protein A precursor
2845	 39.02	0	3408268..3408795	+	175	126642960	-	A1S_2937	-	heavy metal response regulator
2846	 36.58	-1	3408866..3410158	+	430	126642961	-	A1S_2938	-	heavy metal sensor kinase
2847	 40.86	0	3410236..3412386	-	716	126642962	-	A1S_2939	-	ATPase E1-E2 type:copper-translocating P-type ATPase:heavy metal translocating P-type ATPase
2848	 36.42	-1	3412929..3413252	+	107	126642963	-	A1S_2940	-	copper resistance protein CopC
2849	 33.89	-1	3413308..3414201	+	297	126642964	-	A1S_2941	-	copper resistance D
2850	 44.09	+1	3414467..3415405	-	312	126642965	-	A1S_2942	-	hypothetical protein
2851	 41.84	0	3420579..3421754	+	391	126642966	-	A1S_2943	-	hypothetical protein
2852	 33.92	-1	3422376..3423224	-	282	126642967	-	A1S_2944	-	hypothetical protein
2853	 38.61	0	3427462..3428484	+	340	126642968	-	A1S_2945	-	hypothetical protein
2854	 38.46	0	3430012..3430401	+	129	126642969	-	A1S_2946	-	hypothetical protein
2855	 43.09	0	3430442..3430810	-	122	126642970	-	A1S_2947	-	hypothetical protein
2856	 42.78	0	3430866..3431045	-	59	126642971	-	A1S_2948	-	thioredoxin C-3
2857	 40.07	0	3431009..3431305	-	98	126642972	-	A1S_2949	-	hypothetical protein
2858	 38.89	0	3431306..3432097	-	263	126642973	-	A1S_2950	-	hypothetical protein
2859	 40.51	0	3432494..3432730	+	78	126642974	-	A1S_2951	-	putative sulfide dehydrogenase
2860	 35.75	-1	3434499..3435740	+	413	126642975	-	A1S_2952	-	dihydrolipoamide dehydrogenase
2861	 37.45	0	3441671..3442156	-	161	126642976	-	A1S_2955	-	peptidyl prolyl-cis-trans-isomerase rotamase
2862	 37.06	0	3442372..3443283	-	303	126642977	-	A1S_2956	-	esterase
2863	 38.87	0	3444774..3445640	-	288	126642978	-	A1S_2957	-	putative signal peptide
2864	 38.58	0	3445841..3446641	+	266	126642979	-	A1S_2958	-	putative transcriptional regulator
2865	 39.97	0	3446772..3447359	+	195	126642980	-	A1S_2959	-	Hsp 24 nucleotide exchange factor
2866	 40.68	0	3447657..3449453	+	598	126642981	-	A1S_2960	-	chaperone Hsp70
2867	 31.01	-2	3451893..3452279	+	128	126642982	-	A1S_2961	-	hypothetical protein
2868	 43.08	0	3452329..3453375	-	348	126642983	-	A1S_2962	-	putative membrane-bound lytic murein transglycosylase
2869	 42.54	0	3454309..3455199	-	296	126642984	-	A1S_2963	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
2870	 44.87	+1	3455440..3455907	-	155	126642985	-	A1S_2964	-	phosphoribosylaminoimidazole carboxylase mutase subunit
40.16	MEAN

3.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.