IslandPathversion 1.0

IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.16 STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
232	 39.82	0	280747..281517	+	256	126640347	-	A1S_0254	-	permease
233	 40.64	0	281754..282944	+	396	126640348	-	A1S_0255	-	RND efflux transporter
234	 42.37	0	283134..283775	+	213	126640349	-	A1S_0256	-	high affinity phosphate uptake transcriptional repressor
235	 39.83	0	284091..284321	-	76	126640350	-	A1S_0257	-	hypothetical protein
236	 43.86	+1	284370..284483	-	37	126640351	-	A1S_0258	-	argininosuccinate lyase
237	 42.61	0	284594..285628	-	344	126640352	-	A1S_0259	-	argininosuccinate lyase
238	 34.35	-1	286048..286932	+	294	126640353	-	A1S_0260	-	alginate biosynthesis protein
239	 42.37	0	287059..287733	+	224	126640354	-	A1S_0261	-	alginate biosynthesis regulatory protein
240	 43.47	0	288071..288751	+	226	126640355	-	A1S_0262	-	porphobilinogen deaminase
241	 38.80	0	288957..289523	+	188	126640356	-	A1S_0263	-	uroporphyrinogen-III synthase
242	 38.24	0	289598..290107	+	169	126640357	-	A1S_0264	-	hypothetical protein
243	 37.44	0	290151..290369	+	72	126640358	-	A1S_0265	-	hypothetical protein
244	 35.67	-1	290460..291572	+	370	126640359	-	A1S_0266	-	hypothetical protein
245	 31.77	-2	291637..292020	+	127	126640360	-	A1S_0267	-	putative thioesterase
246	 35.17	-1	292215..292541	+	108	126640361	-	A1S_0268	-	putative DNA binding protein
247	 39.38	0	292872..293615	+	247	126640362	-	A1S_0269	-	putative general secretion pathway protein
248	 43.29	0	293759..294451	+	230	126640363	-	A1S_0270	-	putative general secretion pathway protein
249	 40.62	0	294766..296769	+	667	126640364	-	A1S_0271	-	putative general secretion pathway protein
250	 42.02	0	296876..297439	+	187	126640365	-	A1S_0272	-	hypothetical protein
251	 38.17	0	297595..298173	+	192	126640366	-	A1S_0273	-	phosphoglycolate phosphatase
252	 40.49	0	298462..299775	+	437	126640367	-	A1S_0274	-	anthranilate synthase component I; TrpE
253	 44.58	+1	300453..301643	+	396	162286753	-	A1S_0279	-	elongation factor Tu
254	 43.08	0	301855..302295	+	146	162286752	-	A1S_0281	-	IISP family preprotein translocase  membrane subunit
255	 42.44	0	302354..302836	+	160	126640370	-	A1S_0282	-	transcription antitermination protein
256	 42.28	0	303050..303373	+	107	126640371	-	A1S_0283	-	50S ribosomal protein
257	 44.29	+1	303443..304072	+	209	126640372	rplA	A1S_0284	-	50S ribosomal protein L1
258	 41.44	0	304566..304898	+	110	126640373	-	A1S_0285	-	50S ribosomal protein
259	 40.32	0	304941..305312	+	123	126640374	-	A1S_0286	-	50S ribosomal protein
260	 41.74	0	305681..309691	+	1336	126640375	rpoB	A1S_0287	-	DNA-directed RNA polymerase subunit beta
261	 43.37	0	309891..313985	+	1364	126640376	-	A1S_0288	-	DNA-directed RNA polymerase subunit beta'
262	 36.34	-1	315117..315515	-	132	126640377	-	A1S_0289	-	hypothetical protein
263	 38.69	0	316032..316610	+	192	126640378	-	A1S_0290	-	hypothetical protein
264	 41.11	0	316982..318139	+	385	126640379	-	A1S_0291	-	hypothetical protein
265	 37.50	0	318494..319045	+	183	126640380	-	A1S_0292	-	putative outer membrane protein W
266	 36.73	0	319289..319582	+	97	126640381	-	A1S_0293	-	putative signal peptide
267	 37.17	0	321686..322519	-	277	126640382	-	A1S_0296	-	hypothetical protein
268	 39.14	0	322710..323777	-	355	126640383	-	A1S_0297	-	hypothetical protein
269	 40.08	0	324208..324711	-	167	126640384	-	A1S_0298	-	putative polyketide biosynthetic dithiol-disulfide isomerase
270	 33.33	-1	325195..325848	+	217	126640385	-	A1S_0299	-	hypothetical protein
271	 34.70	-1	325870..326235	-	121	126640386	-	A1S_0300	-	MerR family transcriptional regulator
272	 35.48	-1	326395..326952	+	185	126640387	-	A1S_0301	-	hypothetical protein
273	 34.11	-1	327021..327665	-	214	126640388	-	A1S_0302	-	hypothetical protein
274	 39.60	0	328058..328504	+	148	126640389	-	A1S_0303	-	putative peptide signal
275	 29.17	-2	328558..331536	+	992	126640390	-	A1S_0304	-	hypothetical protein
276	 45.17	+1	331587..332684	-	365	126640391	fadA	A1S_0305	-	3-ketoacyl-CoA thiolase
277	 38.95	0	335630..336412	+	260	126640392	-	A1S_0308	-	beta-hydroxylase
278	 40.18	0	336678..337115	+	145	126640393	-	A1S_0309	-	hypothetical protein
279	 42.59	0	337321..339048	+	575	126640394	-	A1S_0310	-	EsvL
280	 40.79	0	339280..339963	+	227	126640395	-	A1S_0311	-	putative acyl-CoA thioesterase II
281	 42.69	0	340082..340669	+	195	126640396	-	A1S_0312	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
282	 39.60	0	341759..342253	+	164	126640397	-	A1S_0315	-	DNA repair system
283	 38.43	0	342448..342957	-	169	126640398	-	A1S_0316	-	putative transcriptional regulator
284	 40.41	0	343795..345816	+	673	126640399	-	A1S_0317	-	putative fusaric acid resistance protein
285	 41.80	0	346112..347056	+	314	126640400	-	A1S_0318	-	putative FusE-MFP/HlyD membrane fusion protein
286	 43.67	+1	347113..347499	-	128	126640401	-	A1S_0319	-	hypothetical protein
287	 44.77	+1	347553..348059	-	168	126640402	-	A1S_0320	-	hypothetical protein
288	 41.07	0	348234..349913	-	559	126640403	-	A1S_0321	-	recombination and DNA repair protein
289	 38.03	0	350091..351326	+	411	126640404	-	A1S_0322	-	hypothetical protein
290	 38.21	0	351484..351729	+	81	126640405	-	A1S_0323	-	hypothetical protein
291	 45.96	+1	351900..352580	+	226	126640406	-	A1S_0324	-	putative tRNA/rRNA methyltransferase
292	 39.06	0	352766..353533	+	255	126640407	-	A1S_0325	-	hypothetical protein
293	 41.31	0	353530..353955	-	141	126640408	-	A1S_0326	-	dephosphocoenzyme A kinase
294	 40.73	0	354128..354871	-	247	126640409	-	A1S_0327	-	type 4 prepilin-like proteins leader peptide processing enzyme
295	 40.23	0	354988..356118	-	376	126640410	-	A1S_0328	-	type 4 fimbrial assembly protein
296	 40.81	0	356244..357875	-	543	126640411	-	A1S_0329	-	type 4 fimbrial biogenesis protein
297	 42.11	0	358301..359041	+	246	126640412	-	A1S_0330	-	triosephosphate isomerase
298	 42.73	0	359054..359383	+	109	162286751	secG	A1S_0331	-	preprotein translocase subunit SecG
299	 41.98	0	359910..360383	+	157	126640414	-	A1S_0334	-	hypothetical protein
300	 41.77	0	360649..361905	+	418	126640415	nusA	A1S_0335	-	transcription elongation factor NusA
301	 42.67	0	364716..365015	+	99	126640416	-	A1S_0338	-	ribosome-binding factor A
302	 41.67	0	365072..365419	-	115	126640417	-	A1S_0339	-	putative monovalent cation/H+ antiporter subunit G
303	 42.38	0	365761..366213	-	150	126640418	-	A1S_0340	-	pH adaptation potassium efflux system E transmembrane protein
304	 40.51	0	366291..367808	-	505	126640419	-	A1S_0341	-	putative monovalent cation/H+ antiporter subunit D
305	 46.74	+1	368102..368377	-	91	126640420	-	A1S_0342	-	putative monovalent cation/H+ antiporter subunit C
306	 42.55	0	368467..371157	-	896	126640421	-	A1S_0343	-	putative monovalent cation/H+ antiporter subunit A
307	 40.86	0	371631..372893	-	420	126640422	-	A1S_0344	-	putative ATP binding site
308	 43.26	0	373037..374416	-	459	126640423	-	A1S_0345	-	putative DNA helicase
309	 41.56	0	374549..375229	-	226	126640424	-	A1S_0346	-	hypothetical protein
310	 42.04	0	375476..376612	-	378	126640425	-	A1S_0347	-	putative oxidoreductase; putative flavoprotein monooxygenase
311	 42.95	0	376914..378410	-	498	126640426	-	A1S_0348	-	2-octaprenylphenol hydroxylase of ubiquinone biosynthetic pathway
312	 40.21	0	378546..379112	-	188	126640427	-	A1S_0349	-	hypothetical protein
313	 42.72	0	379226..380173	-	315	126640428	-	A1S_0350	-	S-adenosylmethionine: 2-DMK methyltransferase and 2-octaprenyl-6-methoxy-14-benzoquinone methylase
314	 38.75	0	380322..380912	-	196	126640429	-	A1S_0351	-	hypothetical protein
315	 41.30	0	381362..382654	+	430	126640430	-	A1S_0352	-	polyphosphate-AMP phosphotransferase
316	 38.75	0	382677..383045	-	122	126640431	-	A1S_0353	-	hypothetical protein
317	 42.73	0	383529..386264	+	911	126640432	-	A1S_0354	-	exonuclease V gamma chain
318	 40.88	0	386422..386991	+	189	126640433	-	A1S_0355	-	exonuclease V gamma chain
319	 44.70	+1	387109..387504	+	131	126640434	-	A1S_0356	-	exonuclease V beta chain
320	 41.55	0	387699..390692	+	997	126640435	-	A1S_0357	-	exonuclease V beta chain
321	 42.42	0	391002..392552	+	516	126640436	-	A1S_0358	-	exonuclease V alpha subunit
322	 42.21	0	393269..394474	-	401	126640437	-	A1S_0359	-	putative beta-lactamase
323	 44.07	+1	394780..395049	+	89	126640438	rpsO	A1S_0360	-	30S ribosomal protein S15
324	 42.03	0	395406..397394	+	662	126640439	-	A1S_0361	-	polynucleotide phosphorylase/polyadenylase
325	 38.60	0	397665..398690	+	341	126640440	-	A1S_0362	-	putative magnesium Mg(2+)/cobalt Co(2+) transport protein
326	 42.28	0	398937..399182	-	81	126640441	-	A1S_0363	-	hypothetical protein
327	 41.82	0	399278..400102	-	274	126640442	-	A1S_0364	-	curved DNA-binding protein
328	 35.27	-1	400385..400951	-	188	126640443	-	A1S_0365	-	putative amino-acid efflux transmembrane protein
329	 41.63	0	401134..401904	-	256	126640444	-	A1S_0366	-	heat shock protein Hsp33
330	 42.36	0	402175..403857	-	560	126640445	-	A1S_0367	-	glutathione-regulated potassium-efflux system protein (K(+)/H(+) antiporter)
331	 43.54	0	404093..406042	-	649	126640446	-	A1S_0368	-	ATP-dependent primosomal protein N'
40.16	MEAN

3.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.