IslandPathversion 1.0

IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.16 STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2712	 37.39	0	3243313..3243756	+	147	126642827	-	A1S_2797	-	hypothetical protein
2713	 38.46	0	3243983..3246460	+	825	126642828	-	A1S_2798	-	hypothetical protein
2714	 37.04	0	3246644..3247372	+	242	126642829	-	A1S_2799	-	hypothetical protein
2715	 41.25	0	3248442..3248858	-	138	126642830	-	A1S_2806	-	hypothetical protein
2716	 49.32	+2	3249096..3249389	-	97	126642831	-	A1S_2807	-	hypothetical protein
2717	 34.38	-1	3249809..3250477	+	222	126642832	-	A1S_2808	-	hypothetical protein
2718	 34.72	-1	3250576..3250719	+	47	126642833	-	A1S_2809	-	bacteriolytic lipoprotein entericidin B
2719	 40.48	0	3250932..3251981	+	349	126642834	-	A1S_2810	-	succinyl-diaminopimelate desuccinylase
2720	 39.32	0	3252478..3256854	-	1458	126642835	-	A1S_2811	-	chemotactic signal transduction system component
2721	 40.84	0	3257145..3259022	-	625	126642836	-	A1S_2812	-	methyl-accepting chemotaxis protein
2722	 39.16	0	3259270..3259698	-	142	126642837	-	A1S_2813	-	twitching motility protein
2723	 41.67	0	3259867..3260118	-	83	126642838	-	A1S_2814	-	twitching motility protein
2724	 37.85	0	3260253..3260606	-	117	126642839	-	A1S_2815	-	twitching motility protein
2725	 34.83	-1	3260958..3261557	+	199	126642840	-	A1S_2816	-	hypothetical protein
2726	 38.70	0	3261617..3262735	+	372	126642841	-	A1S_2817	-	NolF secretion protein
2727	 39.92	0	3262814..3265849	+	1011	126642842	-	A1S_2818	-	nodulation protein precursor
2728	 41.80	0	3265983..3267623	+	546	126642843	-	A1S_2819	-	prolyl-tRNA synthetase
2729	 36.26	-1	3267677..3268018	-	113	126642844	-	A1S_2820	-	hypothetical protein
2730	 33.91	-1	3268230..3268574	-	114	126642845	-	A1S_2821	-	putative alkylphosphonate uptake protein (PhnA) in phosphonate metabolism
2731	 33.05	-2	3268665..3269021	-	118	126642846	-	A1S_2822	-	hypothetical protein
2732	 40.68	0	3269163..3269516	-	117	126642847	-	A1S_2823	-	hypothetical protein
2733	 40.67	0	3269898..3270551	+	217	126642848	-	A1S_2824	-	hypothetical protein
2734	 37.82	0	3270940..3271407	+	155	126642849	-	A1S_2825	-	putative thiol:disulphide interchange protein (DsbC-like)
2735	 39.77	0	3271794..3272414	+	206	126642850	-	A1S_2826	-	putative signal peptide
2736	 39.02	0	3272448..3273080	-	210	126642851	-	A1S_2827	-	putative transporter
2737	 43.90	+1	3273437..3274477	-	346	126642852	-	A1S_2828	-	putative FMN oxidoreductase
2738	 40.99	0	3274556..3276463	-	635	126642853	-	A1S_2829	-	putative tonB-dependent receptor protein
2739	 42.66	0	3276893..3277321	-	142	126642854	-	A1S_2830	-	DNA-3-methyladenine glycosylase
2740	 41.15	0	3277733..3278359	+	208	126642855	-	A1S_2831	-	formamidopyrimidine-DNA glycosylase
2741	 41.18	0	3278364..3278669	+	101	126642856	-	A1S_2832	-	peptidyl-prolyl cis-trans isomerase precursor
2742	 36.51	-1	3278680..3278931	-	83	126642857	-	A1S_2833	-	hypothetical protein
2743	 36.43	-1	3279176..3279562	-	128	126642858	-	A1S_2834	-	mechanosensitive channel
2744	 41.73	0	3279862..3281565	-	567	126642859	-	A1S_2835	-	GTP-binding elongation factor family protein
2745	 39.85	0	3282053..3283234	+	393	126642860	-	A1S_2836	-	putative transporter
2746	 39.95	0	3283570..3284310	+	246	126642861	-	A1S_2837	-	ribosomal RNA small subunit methyltransferase C
2747	 39.22	0	3284503..3285792	+	429	126642862	-	A1S_2838	-	lysine-specific permease
2748	 40.40	0	3286170..3287273	+	367	126642863	-	A1S_2839	-	hypothetical protein
2749	 42.65	0	3287560..3288600	-	346	126642864	-	A1S_2840	-	outer membrane protein A
2750	 32.89	-2	3289075..3289527	+	150	126642865	-	A1S_2841	-	putative type 4 fimbrial biogenesis protein FimT
2751	 43.14	0	3289792..3290811	+	339	126642866	-	A1S_2842	-	putative acetyl-CoA acetyltransferase
2752	 38.10	0	3291025..3291381	+	118	126642867	-	A1S_2843	-	hypothetical protein
2753	 38.01	0	3291438..3291779	-	113	126642868	-	A1S_2844	-	quaternary ammonium compound-resistance protein
2754	 40.00	0	3291862..3292266	-	134	126642869	-	A1S_2845	-	hypothetical protein
2755	 40.12	0	3292340..3293827	-	495	126642870	-	A1S_2846	-	CysI-like sulfite reductase protein
2756	 41.97	0	3294150..3295376	-	408	126642871	-	A1S_2847	-	glucose dehydrogenase
2757	 40.52	0	3295583..3296347	-	254	126642872	-	A1S_2848	-	glucose dehydrogenase
2758	 40.75	0	3296728..3297873	-	381	126642873	-	A1S_2849	-	putative glucose-sensitive porin (OprB-like )
2759	 42.95	0	3298116..3299165	-	349	126642874	-	A1S_2850	-	putative acyl-CoA transferase/carnitine dehydratase
2760	 42.73	0	3299445..3300455	+	336	126642875	-	A1S_2851	-	AraC family transcriptional regulator
2761	 43.56	0	3300924..3301832	+	302	126642876	-	A1S_2852	-	putative thiolase; putative acyl-CoA thiolase
2762	 42.42	0	3301934..3302362	+	142	126642877	-	A1S_2853	-	putative 3-hydroxybutyryl-CoA epimerase
2763	 42.95	0	3302566..3303990	+	474	126642878	-	A1S_2854	-	putative 3-hydroxybutyryl-CoA epimerase
2764	 40.00	0	3304155..3304409	+	84	126642879	-	A1S_2855	-	hypothetical protein
2765	 43.15	0	3304695..3305285	+	196	126642880	-	A1S_2856	-	putative esterase
2766	 41.13	0	3305315..3305596	-	93	126642881	-	A1S_2857	-	putative acetyl transferase
2767	 38.26	0	3305747..3306904	-	385	126642882	-	A1S_2858	-	putative methyltransferase
2768	 35.64	-1	3307163..3307726	+	187	126642883	-	A1S_2859	-	putative hemolysin III (HLY-III)
2769	 39.27	0	3308161..3309171	+	336	126642884	-	A1S_2860	-	MFS family transporter
2770	 45.27	+1	3309253..3309654	-	133	126642885	-	A1S_2861	-	putative signal peptide
2771	 41.48	0	3309827..3312550	-	907	162286722	-	A1S_2862	-	preprotein translocase subunit SecA
2772	 36.95	0	3313102..3313599	+	165	126642887	-	A1S_2863	-	putative antioxidant protein
2773	 36.84	0	3314260..3314715	+	151	126642888	-	A1S_2864	-	hypothetical protein
2774	 36.95	0	3314766..3315290	+	174	126642889	-	A1S_2865	-	protein tyrosine/serine phosphatase
2775	 46.58	+1	3315310..3316200	-	296	126642890	-	A1S_2866	-	hypothetical protein
2776	 38.89	0	3316371..3316640	-	89	126642891	-	A1S_2867	-	hypothetical protein
2777	 41.55	0	3316703..3317530	-	275	126642892	-	A1S_2868	-	hypothetical protein
2778	 42.29	0	3317653..3318333	-	226	126642893	-	A1S_2869	-	acetylCoA carboxylase beta subunit
2779	 45.02	+1	3318546..3319349	-	267	162286721	trpA	A1S_2870	-	tryptophan synthase subunit alpha
2780	 40.94	0	3319594..3320421	-	275	126642895	-	A1S_2871	-	putative transcriptional regulator
2781	 39.87	0	3320875..3321639	+	254	126642896	-	A1S_2872	-	hypothetical protein
2782	 38.05	0	3321648..3322643	-	331	126642897	-	A1S_2873	-	hypothetical protein
2783	 38.78	0	3322681..3323121	-	146	126642898	-	A1S_2874	-	hypothetical protein
2784	 44.44	+1	3323203..3324336	-	377	126642899	-	A1S_2875	-	tryptophan synthase subunit beta
2785	 43.04	0	3324416..3324889	-	157	126642900	-	A1S_2876	-	N-(5'-phosphoribosyl)anthranilate isomerase
2786	 35.14	-1	3325495..3327318	+	607	126642901	-	A1S_2877	-	vitamin B12 receptor precursor
2787	 40.20	0	3327586..3327993	+	135	126642902	-	A1S_2878	-	hypothetical protein
2788	 38.97	0	3328195..3328779	+	194	126642903	-	A1S_2879	-	putative glycerophosphodiester phosphodiesterase
2789	 39.34	0	3328807..3329322	-	171	126642904	-	A1S_2880	-	putative signal peptide
2790	 39.56	0	3329546..3330718	+	390	126642905	-	A1S_2881	-	putative fatty acid desaturase
2791	 42.33	0	3331030..3332274	+	414	126642906	-	A1S_2882	-	hypothetical protein
2792	 40.00	0	3332338..3332937	-	199	126642907	-	A1S_2883	-	OmpR family transcriptional regulator
2793	 38.46	0	3333044..3334525	-	493	126642908	-	A1S_2884	-	two component signal transduction system kinase sensor component
2794	 45.65	+1	3334883..3335215	+	110	126642909	-	A1S_2885	-	putative signal peptide
2795	 42.16	0	3335619..3337307	+	562	126642910	-	A1S_2886	-	acyl-CoA dehydrogenase
2796	 42.44	0	3337610..3339256	+	548	126642911	-	A1S_2887	-	acyl-CoA dehydrogenase A
2797	 36.18	-1	3339471..3339857	+	128	126642912	-	A1S_2888	-	hypothetical protein
2798	 45.40	+1	3339896..3340243	-	115	126642913	-	A1S_2889	-	putative signal peptide
2799	 42.67	0	3340516..3340890	+	124	126642914	-	A1S_2890	-	hypothetical protein
2800	 39.69	0	3341085..3342296	-	403	126642915	-	A1S_2891	-	phospholipase D endonuclease domain-containing protein
2801	 41.37	0	3342624..3344477	-	617	126642916	-	A1S_2892	-	putative TonB-dependent receptor protein
2802	 36.46	-1	3344928..3345599	+	223	126642917	-	A1S_2893	-	hypothetical protein
2803	 41.98	0	3345884..3347548	+	554	126642918	aspS	A1S_2894	-	aspartyl-tRNA synthetase
2804	 35.59	-1	3347727..3347903	+	58	126642919	-	A1S_2895	-	hypothetical protein
2805	 27.94	-2	3348033..3348737	+	234	126642920	-	A1S_2896	-	hypothetical protein
2806	 30.56	-2	3348739..3349818	-	359	126642921	-	A1S_2897	-	UDP-N-acetylglucosamine 2-epimerase
2807	 39.26	0	3350964..3351773	+	269	126642922	-	A1S_2898	-	hypothetical protein
2808	 40.84	0	3351770..3352702	-	310	126642923	-	A1S_2899	-	putative glycosyltransferase
2809	 34.83	-1	3352812..3353345	-	177	126642924	-	A1S_2900	-	putative lipopolysaccharide core biosynthesis glycosyl transferase LpsC
2810	 37.72	0	3353576..3354214	-	212	126642925	-	A1S_2901	-	putative polysaccharide deacetylase
2811	 38.00	0	3354328..3355227	-	299	126642926	-	A1S_2902	-	hypothetical protein
40.16	MEAN

3.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.