IslandPathversion 1.0

IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.16 STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2390	 39.32	0	2860139..2860522	+	127	126642505	-	A1S_2469	-	hypothetical protein
2391	 37.90	0	2860580..2863207	-	875	126642506	-	A1S_2470	-	putative protease
2392	 37.64	0	2863465..2864184	-	239	126642507	-	A1S_2471	-	putative epimerase
2393	 43.04	0	2864429..2865592	-	387	126642508	-	A1S_2472	-	putative transport protein
2394	 40.00	0	2866021..2866830	-	269	126642509	-	A1S_2473	-	LysR family transcriptional regulator
2395	 40.74	0	2867017..2868177	+	386	126642510	-	A1S_2474	-	major facilitator family transporter
2396	 41.55	0	2869529..2870647	-	372	126642511	-	A1S_2475	-	isocitrate dehydrogenase
2397	 44.54	+1	2871052..2871774	+	240	126642512	-	A1S_2476	-	putative pseudouridine synthase
2398	 42.99	0	2871892..2873982	-	696	126642513	-	A1S_2477	-	isocitrate dehydrogenase
2399	 36.55	-1	2874531..2876054	-	507	126642514	-	A1S_2478	-	putative trypsin-like serine protease
2400	 38.64	0	2876596..2877726	+	376	126642515	-	A1S_2479	-	putative D-ala-D-ala-carboxypeptidase penicillin-binding protein
2401	 39.81	0	2878063..2879112	+	349	126642516	-	A1S_2480	-	NADH dehydrogenase II
2402	 42.27	0	2879272..2879730	+	152	126642517	-	A1S_2481	-	FKBP-type peptidyl-prolyl cis-trans isomerase
2403	 35.95	-1	2880131..2881276	+	381	126642518	-	A1S_2482	-	deoxyribodipyrimidine photolyase (photoreactivation) FAD-binding
2404	 35.39	-1	2881530..2882210	+	226	126642519	-	A1S_2483	-	hypothetical protein
2405	 37.48	0	2882360..2883106	+	248	126642520	-	A1S_2484	-	hypothetical protein
2406	 39.17	0	2883282..2884343	+	353	126642521	-	A1S_2485	-	putative glycosyltransferase
2407	 39.67	0	2884413..2885249	+	278	126642522	-	A1S_2486	-	hypothetical protein
2408	 36.61	-1	2885639..2886187	+	182	126642523	-	A1S_2487	-	hypothetical protein
2409	 38.75	0	2886240..2887070	+	276	126642524	-	A1S_2488	-	hypothetical protein
2410	 39.33	0	2887078..2887878	-	266	126642525	-	A1S_2489	-	UDP-N-acetyl glucosamine-2-epimerase
2411	 34.04	-1	2888022..2888162	-	46	126642526	-	A1S_2490	-	UDP-N-acetyl glucosamine-2-epimerase
2412	 37.35	0	2888219..2889364	-	381	126642527	-	A1S_2491	-	putative signal peptide
2413	 39.06	0	2889800..2890393	+	197	126642528	-	A1S_2492	-	putative nodulin 21-related protein
2414	 41.48	0	2890496..2891551	+	351	126642529	-	A1S_2493	-	putative 2-nitropropane dioxygenase
2415	 39.74	0	2891595..2892500	-	301	126642530	-	A1S_2494	-	NifR3 family protein
2416	 38.30	0	2892704..2893912	+	402	126642531	-	A1S_2495	-	hypothetical protein
2417	 38.96	0	2894074..2894535	+	153	126642532	-	A1S_2496	-	putative phosphoserine phosphatase
2418	 43.65	+1	2894562..2895695	-	377	162286725	-	A1S_2497	-	gamma-glutamyl kinase
2419	 42.75	0	2895711..2896676	-	321	126642534	-	A1S_2498	-	putative GTP-binding protein (Obg)
2420	 32.81	-2	2897148..2897723	-	191	126642535	-	A1S_2499	-	hypothetical protein
2421	 34.86	-1	2897834..2898487	-	217	126642536	-	A1S_2500	-	hypothetical protein
2422	 39.06	0	2898718..2900097	-	459	126642537	-	A1S_2501	-	glyceraldehyde-3-phosphate dehydrogenase
2423	 37.83	0	2900392..2901192	-	266	126642538	-	A1S_2502	-	chloramphenicol-sensitive protein
2424	 36.83	0	2901448..2901876	-	142	126642539	-	A1S_2503	-	putative outer membrane lipoprotein
2425	 41.77	0	2902129..2904000	-	623	126642540	-	A1S_2504	-	excinuclease ABC subunit B
2426	 39.19	0	2904405..2905121	+	238	126642541	-	A1S_2505	-	hypothetical protein
2427	 36.67	-1	2905557..2906726	+	389	126642542	-	A1S_2506	-	putative GGDEF family protein
2428	 46.94	+1	2906762..2906908	-	48	126642543	-	A1S_2507	-	hypothetical protein
2429	 41.29	0	2907248..2908378	+	376	126642544	-	A1S_2508	-	aspartate aminotransferase A
2430	 27.88	-2	2908784..2910562	+	592	126642545	-	A1S_2509	-	putative chaperone
2431	 37.78	0	2910614..2912209	-	531	126642546	-	A1S_2510	-	chaperone protein
2432	 38.93	0	2913320..2913712	+	130	126642547	-	A1S_2511	-	phenylacetic acid degradation-related protein
2433	 33.57	-1	2913727..2914155	-	142	126642548	-	A1S_2512	-	hypothetical protein
2434	 37.02	0	2914649..2915245	-	198	126642549	-	A1S_2514	-	Short-chain alcohol dehydrogenase of unknown specificity
2435	 41.71	0	2915700..2916236	-	178	126642550	-	A1S_2515	-	putative tRNA hydroxylase
2436	 40.26	0	2916351..2916899	-	182	126642551	-	A1S_2516	-	pyridoxal phosphate biosynthetic protein PdxJ
2437	 39.84	0	2917090..2917734	-	214	126642552	-	A1S_2517	-	DNA repair protein
2438	 37.62	0	2918032..2918895	-	287	126642553	era	A1S_2518	-	GTP-binding protein Era
2439	 41.05	0	2919066..2919596	-	176	126642554	-	A1S_2519	-	ribonuclease III
2440	 37.92	0	2919730..2920056	-	108	126642555	-	A1S_2520	-	putative signal peptide
2441	 37.75	0	2920128..2920739	-	203	126642556	-	A1S_2521	-	leader peptidase
2442	 41.51	0	2921026..2922738	-	570	126642557	-	A1S_2522	-	GTP-binding protein LepA
2443	 32.58	-2	2923176..2923574	-	132	126642558	-	A1S_2523	-	ribosomal-protein-alanine acetyltransferase
2444	 39.90	0	2923588..2923968	-	126	126642559	-	A1S_2524	-	putative thioesterase
2445	 41.04	0	2924164..2925513	-	449	126642560	-	A1S_2525	-	putative serine protease
2446	 42.25	0	2925990..2927414	+	474	126642561	-	A1S_2526	-	L-aspartate oxidase
2447	 41.94	0	2927468..2927827	-	119	126642562	-	A1S_2527	-	putative thioesterase protein
2448	 40.35	0	2928023..2928478	-	151	126642563	-	A1S_2528	-	thymidylate kinase
2449	 38.70	0	2928632..2929525	-	297	126642564	-	A1S_2529	-	hypothetical protein
2450	 39.29	0	2929704..2930291	-	195	126642565	-	A1S_2530	-	4-amino-4-deoxychorismate lyase
2451	 41.30	0	2930746..2931498	+	250	126642566	-	A1S_2531	-	sulfate transport protein
2452	 35.90	-1	2931669..2931785	+	38	126642567	-	A1S_2532	-	sulfate transport protein
2453	 41.43	0	2931894..2932424	+	176	126642568	-	A1S_2533	-	putative esterase
2454	 42.29	0	2932580..2933338	+	252	126642569	-	A1S_2534	-	sulfate transport protein
2455	 42.03	0	2933461..2934219	+	252	126642570	-	A1S_2535	-	putative sulfate permease
2456	 43.23	0	2934495..2935292	+	265	126642571	-	A1S_2536	-	putative ATPase
2457	 37.71	0	2935580..2936287	+	235	126642572	-	A1S_2537	-	putative LysR-type transcriptional regulator
2458	 38.84	0	2936379..2937050	-	223	126642573	-	A1S_2538	-	outer membrane protein CarO precursor
2459	 40.88	0	2937402..2938223	+	273	126642574	dapD	A1S_2539	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
2460	 42.67	0	2938380..2938754	+	124	126642575	-	A1S_2540	-	putative organic radical activating enzyme
2461	 44.44	+1	2938778..2939011	+	77	126642576	-	A1S_2541	-	putative organic radical activating enzyme
2462	 41.54	0	2939151..2939723	+	190	126642577	-	A1S_2542	-	hypothetical protein
2463	 39.72	0	2939794..2940153	+	119	126642578	-	A1S_2543	-	hypothetical protein
2464	 38.22	0	2940337..2940930	+	197	126642579	-	A1S_2544	-	hypothetical protein
2465	 37.31	0	2941008..2941409	+	133	126642580	-	A1S_2545	-	bacterioferritin comigratory protein
2466	 37.59	0	2941706..2942104	+	132	126642581	-	A1S_2546	-	secreted trypsin-like serine protease
2467	 35.70	-1	2942175..2942765	-	196	126642582	-	A1S_2547	-	nicotinamide-nucleotide adenylyltransferase
2468	 39.52	0	2943094..2943675	+	193	126642583	-	A1S_2548	-	putative enoyl-CoA hydratase/isomerase
2469	 41.19	0	2943672..2943989	-	105	126642584	-	A1S_2549	-	hypothetical protein
2470	 35.37	-1	2944744..2945481	+	245	126642585	-	A1S_2550	-	Tn7 transposase A
2471	 38.02	0	2945552..2947555	+	667	126642586	-	A1S_2551	-	Tn7-like transposition protein B
2472	 39.01	0	2947774..2949201	+	475	126642587	-	A1S_2552	-	ATPase
2473	 37.95	0	2949442..2950113	+	223	126642588	-	A1S_2553	-	transposition site target selection protein D
2474	 41.83	0	2950472..2950930	+	152	126642589	-	A1S_2554	-	putative transposase
2475	 33.80	-1	2951143..2951787	+	214	126642590	-	A1S_2555	-	transposition site target selection protein D
2476	 35.62	-1	2951918..2953363	+	481	126642591	-	A1S_2556	-	hypothetical protein
2477	 42.93	0	2953600..2953995	-	131	126642592	-	A1S_2557	-	hypothetical protein
2478	 41.21	0	2954039..2954203	-	54	126642593	-	A1S_2558	-	putative transposase
2479	 31.61	-2	2955851..2956837	+	328	126642594	-	A1S_2559	-	hypothetical protein
2480	 38.07	0	2956972..2958111	+	379	126642595	-	A1S_2560	-	hypothetical protein
2481	 35.86	-1	2958211..2960232	+	673	126642596	-	A1S_2561	-	hypothetical protein
2482	 40.18	0	2960436..2961692	-	418	126642597	-	A1S_2562	-	putative multidrug resistance pump
2483	 41.09	0	2961810..2962415	-	201	126642598	-	A1S_2563	-	putative siderophore-interacting protein
2484	 34.70	-1	2962448..2962885	-	145	126642599	-	A1S_2564	-	putative siderophore-interacting protein
2485	 39.16	0	2962985..2964133	-	382	126642600	-	A1S_2565	-	MFS family transporter
2486	 43.28	0	2964253..2965911	-	552	126642601	-	A1S_2566	-	putative ferric siderophore receptor protein
2487	 35.18	-1	2966793..2967443	+	216	126642602	-	A1S_2567	-	putative thioesterase
2488	 34.46	-1	2967530..2968327	+	265	126642603	-	A1S_2568	-	phosphopantetheinyl transferase component of siderophore synthetase
2489	 44.44	+1	2968816..2968995	-	59	126642604	-	A1S_2569	-	hypothetical protein
40.16	MEAN

3.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.