IslandPathversion 1.0

IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.16 STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2146	 29.57	-2	2580160..2580558	-	132	126642261	-	A1S_2216	-	CsuB
2147	 28.19	-2	2580594..2581040	-	148	126642262	-	A1S_2217	-	CsuA
2148	 40.51	0	2581217..2581606	-	129	126642263	-	A1S_2218	-	CsuA/B
2149	 36.51	-1	2583263..2583829	-	188	126642264	-	A1S_2219	-	GntR family transcriptional regulator
2150	 37.98	0	2584337..2584960	+	207	126642265	-	A1S_2220	-	hypothetical protein
2151	 41.64	0	2585013..2586035	-	340	126642266	-	A1S_2221	-	sodium/glutamate symport carrier protein
2152	 40.53	0	2586702..2587757	+	351	126642267	-	A1S_2222	-	putative poly(R)-hydroxyalkanoic acid synthase
2153	 37.28	0	2587915..2588751	+	278	126642268	-	A1S_2223	-	AraC family transcriptional regulator
2154	 34.90	-1	2588961..2589407	+	148	126642269	-	A1S_2224	-	threonine efflux protein
2155	 33.90	-1	2590296..2590646	-	116	126642270	-	A1S_2225	-	hypothetical protein
2156	 41.57	0	2591578..2592111	-	177	126642271	-	A1S_2226	-	putative glycosyl transferase related protein
2157	 39.00	0	2592219..2592818	-	199	126642272	-	A1S_2227	-	putative methyltransferase
2158	 40.47	0	2592793..2593521	-	242	126642273	-	A1S_2228	-	hypothetical protein
2159	 43.49	0	2593575..2594480	-	301	126642274	-	A1S_2229	-	putative acyl-CoA dehydrogenase-related protein
2160	 32.05	-2	2594848..2595081	+	77	126642275	-	A1S_2230	-	hypothetical protein
2161	 40.06	0	2595230..2596462	-	410	126642276	-	A1S_2231	-	gamma-aminobutyrate permease
2162	 42.98	0	2596730..2598025	-	431	126642277	-	A1S_2232	-	methylmalonate-semialdehyde dehydrogenase
2163	 44.00	+1	2598409..2599242	-	277	126642278	-	A1S_2233	-	hypothetical protein
2164	 43.68	+1	2599370..2599717	-	115	126642279	-	A1S_2234	-	hypothetical protein
2165	 37.95	0	2600025..2600804	+	259	126642280	-	A1S_2235	-	regulatory protein LysR:LysR, substrate-binding
2166	 34.37	-1	2601433..2602107	-	224	126642281	-	A1S_2240	-	putative protein kinase
2167	 38.98	0	2602223..2603656	-	477	126642282	-	A1S_2241	-	hypothetical protein
2168	 37.04	0	2603982..2604791	+	269	126642283	-	A1S_2242	-	ATPase
2169	 37.53	0	2605523..2605999	+	158	126642284	-	A1S_2243	-	hypothetical protein
2170	 41.34	0	2606002..2606838	-	278	126642285	-	A1S_2244	-	putative O-sialoglycoprotein endopeptidase gcp
2171	 43.28	0	2607173..2607373	+	66	126642286	rpsU	A1S_2245	-	30S ribosomal protein S21
2172	 43.28	0	2607445..2607846	+	133	126642287	-	A1S_2246	-	hypothetical protein
2173	 41.65	0	2607937..2609187	-	416	126642288	-	A1S_2247	-	putative signal peptide
2174	 38.18	0	2609512..2610336	-	274	126642289	-	A1S_2248	-	2-keto-D-gluconate reductase
2175	 37.61	0	2610489..2611073	-	194	126642290	-	A1S_2249	-	hypothetical protein
2176	 36.93	0	2611240..2613072	-	610	126642291	-	A1S_2250	-	hypothetical protein
2177	 40.45	0	2613208..2614683	-	491	126642292	-	A1S_2251	-	amidophosphoribosyltransferase
2178	 41.61	0	2614775..2615245	-	156	126642293	-	A1S_2252	-	putative colicin V producing membrane protein
2179	 38.80	0	2615369..2616301	-	310	126642294	-	A1S_2253	-	dihydroorotate dehydrogenase 2
2180	 36.43	-1	2616463..2616849	-	128	126642295	-	A1S_2254	-	hypothetical protein
2181	 39.33	0	2616942..2617925	-	327	126642296	-	A1S_2255	-	general secretion pathway protein L
2182	 37.00	0	2618104..2618403	-	99	126642297	-	A1S_2256	-	putative phosphohistidine phosphatase
2183	 39.81	0	2618616..2619587	-	323	126642298	gpsA	A1S_2257	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
2184	 43.55	0	2619725..2620135	-	136	126642299	-	A1S_2258	-	putative nitroreductase
2185	 36.72	0	2620531..2620884	+	117	126642300	-	A1S_2259	-	putative signal peptide
2186	 39.46	0	2620921..2621997	-	358	126642301	-	A1S_2260	-	ATP-dependent RNA helicase RhlB
2187	 43.66	+1	2622176..2622388	-	70	126642302	-	A1S_2261	-	putative cold shock protein
2188	 41.45	0	2623306..2624007	+	233	126642303	-	A1S_2262	-	EsvH
2189	 42.28	0	2624161..2624484	+	107	126642304	-	A1S_2263	-	hypothetical protein
2190	 41.41	0	2624498..2624695	+	65	126642305	-	A1S_2264	-	ThiF/ThiS complex component
2191	 41.43	0	2624853..2625494	+	213	126642306	-	A1S_2265	-	thiamine biosynthesis protein thiazole moiety
2192	 35.91	-1	2625631..2626095	-	154	126642307	-	A1S_2266	-	hypothetical protein
2193	 33.33	-1	2626274..2626900	-	208	126642308	-	A1S_2267	-	hypothetical protein
2194	 40.67	0	2627153..2627806	+	217	126642309	-	A1S_2268	-	putative hydrolase
2195	 36.81	0	2627864..2629357	-	497	126642310	-	A1S_2269	-	RtcR
2196	 37.82	0	2629773..2630507	+	244	126642311	-	A1S_2270	-	beta-lactamase superfamily hydrolase
2197	 41.98	0	2630853..2632031	+	392	126642312	-	A1S_2271	-	rtcb protein
2198	 36.79	0	2632484..2632888	+	134	126642313	-	A1S_2272	-	hypothetical protein
2199	 37.06	0	2633247..2634158	+	303	126642314	-	A1S_2273	-	3'-terminal phosphate cyclase
2200	 41.93	0	2634229..2635449	-	406	126642315	-	A1S_2274	-	aminoacyl-histidine dipeptidase
2201	 38.54	0	2635860..2636243	-	127	126642316	-	A1S_2275	-	hypothetical protein
2202	 42.89	0	2636371..2638515	-	714	126642317	-	A1S_2276	-	hypothetical protein
2203	 40.40	0	2638726..2639631	-	301	126642318	-	A1S_2277	-	hypothetical protein
2204	 38.84	0	2640276..2640965	+	229	126642319	-	A1S_2278	-	alpha/beta family hydrolase
2205	 40.57	0	2641009..2642100	-	363	126642320	-	A1S_2279	-	putative acyl coenzyme A dehydrogenase (HcaD-like)
2206	 39.88	0	2642318..2643493	-	391	126642321	-	A1S_2280	-	C4-dicarboxylate transporter DctA
2207	 39.86	0	2644301..2645188	+	295	126642322	-	A1S_2281	-	hypothetical protein
2208	 38.37	0	2645389..2645646	-	85	126642323	-	A1S_2282	-	hypothetical protein
2209	 41.21	0	2645658..2646419	-	253	126642324	ppnK	A1S_2283	-	inorganic polyphosphate/ATP-NAD kinase
2210	 41.16	0	2647040..2649148	+	702	126642325	-	A1S_2284	-	hypothetical protein
2211	 41.72	0	2649208..2649720	+	170	126642326	-	A1S_2285	-	hypothetical protein
2212	 38.81	0	2649742..2650581	-	279	126642327	-	A1S_2286	-	hypothetical protein
2213	 37.60	0	2651014..2652255	-	413	126642328	-	A1S_2287	-	putative two-component system sensor protein
2214	 39.68	0	2652369..2652809	-	146	126642329	-	A1S_2288	-	putative two-component response regulator
2215	 38.89	0	2653139..2653462	-	107	126642330	-	A1S_2289	-	putative signal peptide
2216	 41.02	0	2653580..2655049	-	489	126642331	-	A1S_2290	-	putative secretion pathway ATPase
2217	 41.21	0	2655625..2656893	+	422	126642332	-	A1S_2291	-	hypothetical protein
2218	 37.20	0	2656903..2657523	-	206	126642333	-	A1S_2292	-	hypothetical protein
2219	 38.74	0	2657850..2658515	+	221	126642334	-	A1S_2293	-	ferredoxin--NADP+ reductase
2220	 42.89	0	2658570..2659364	-	264	126642335	-	A1S_2294	-	hypothetical protein
2221	 41.42	0	2659738..2661135	+	465	126642336	-	A1S_2295	-	putative transcriptional regulator
2222	 41.23	0	2661234..2662562	+	442	126642337	-	A1S_2296	-	putative protease
2223	 37.33	0	2662604..2662828	+	74	126642338	-	A1S_2297	-	putative 4Fe-4S ferredoxin
2224	 36.00	-1	2663169..2663393	+	74	126642339	-	A1S_2298	-	SMR family efflux pump
2225	 42.51	0	2663466..2663999	-	177	126642340	-	A1S_2299	-	ABC transporter
2226	 40.64	0	2664252..2664908	-	218	126642341	-	A1S_2300	-	amino acid ABC transporter permease
2227	 42.83	0	2664962..2665456	-	164	126642342	-	A1S_2301	-	amino acid ABC transporter permease
2228	 40.26	0	2665743..2666291	-	182	126642343	-	A1S_2302	-	lysine/arginine/ornithine ABC transporter periplasmic-binding protein
2229	 41.45	0	2666703..2667638	-	311	126642344	-	A1S_2303	-	LysR family transcriptional regulator
2230	 44.76	+1	2668004..2669149	+	381	126642345	-	A1S_2304	-	RND efflux transporter
2231	 44.82	+1	2669384..2672335	+	983	126642346	-	A1S_2305	-	cation/multidrug efflux pump
2232	 44.32	+1	2672450..2673796	+	448	126642347	-	A1S_2306	-	RND efflux transporter
2233	 42.46	0	2673837..2674964	-	375	126642348	-	A1S_2307	-	serine hydroxymethyltransferase
2234	 40.69	0	2675336..2676355	-	339	126642349	-	A1S_2308	-	hypothetical protein
2235	 38.29	0	2676977..2677501	+	174	126642350	-	A1S_2309	-	putative DNA exonuclease X
2236	 39.06	0	2678655..2679509	+	284	126642351	-	A1S_2311	-	putative transport protein
2237	 36.32	-1	2679611..2680279	+	222	126642352	-	A1S_2312	-	putative transport protein
2238	 39.20	0	2680339..2681088	+	249	126642353	queF	A1S_2313	-	7-cyano-7-deazaguanine reductase
2239	 37.33	0	2681112..2681762	+	216	126642354	-	A1S_2314	-	EsvE2
2240	 40.46	0	2681954..2683033	+	359	126642355	-	A1S_2315	-	EsvE3
2241	 40.92	0	2683185..2684054	+	289	126642356	-	A1S_2316	-	membrane-bound lytic murein transglycosylase B
2242	 41.40	0	2684393..2684962	+	189	126642357	-	A1S_2317	-	putative lipoprotein precursor (RlpA-like)
2243	 37.00	0	2685672..2685971	+	99	126642358	-	A1S_2318	-	hypothetical protein
2244	 34.18	-1	2686331..2686918	-	195	126642359	-	A1S_2319	-	hypothetical protein
2245	 36.07	-1	2687142..2687690	-	182	126642360	-	A1S_2320	-	AraC family transcriptional regulator
40.16	MEAN

3.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.