IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.16   STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2003	 37.35	0	2417720..2419162	+	480	126642118	-	A1S_2073	-	ABC transporter ATPase
2004	 29.23	-2	2419236..2419625	-	129	126642119	-	A1S_2074	-	hypothetical protein
2005	 39.14	0	2420396..2421394	-	332	126642120	-	A1S_2075	-	putative outer membrane protein
2006	 37.11	0	2421814..2422872	-	352	126642121	-	A1S_2076	-	putative outer membrane porin receptor for Fe(III)-coprogen, Fe(III)-ferrioxamine B and Fe(III)-rhodotrulic acid uptake (fhuE)
2007	 42.92	0	2423196..2423915	-	239	126642122	-	A1S_2077	-	putative outer membrane porin receptor for Fe(III)-coprogen, Fe(III)-ferrioxamine B and Fe(III)-rhodotrulic acid uptake (fhuE)
2008	 37.09	0	2424216..2424668	+	150	126642123	-	A1S_2078	-	acetyltransferase
2009	 38.02	0	2427162..2428334	-	390	126642124	-	A1S_2079	-	putative mechanosensitive ion channel
2010	 39.96	0	2429068..2430576	+	502	126642125	-	A1S_2080	-	putative siderophore receptor
2011	 39.35	0	2430687..2431118	+	143	126642126	-	A1S_2081	-	TonB-dependent siderophore receptor
2012	 34.64	-1	2431181..2431564	-	127	126642127	-	A1S_2082	-	putative transcriptional regulator
2013	 40.96	0	2433610..2434107	+	165	126642128	-	A1S_2083	-	AsnC family transcriptional regulator
2014	 40.36	0	2434136..2434633	-	165	126642129	-	A1S_2084	-	chorismate mutase
2015	 41.19	0	2434771..2435241	-	156	126642130	-	A1S_2085	-	oxidoreductase
2016	 41.47	0	2435464..2436225	-	253	126642131	-	A1S_2086	-	putative short chain dehydrogenase
2017	 40.11	0	2436233..2436778	-	181	126642132	-	A1S_2087	-	putative glutathione S-transferase
2018	 41.60	0	2437146..2437907	-	253	126642133	-	A1S_2088	-	hypothetical protein
2019	 40.62	0	2438156..2440474	-	772	126642134	-	A1S_2089	-	fimbrial usher protein
2020	 33.50	-1	2440625..2441239	-	204	126642135	-	A1S_2090	-	hypothetical protein
2021	 43.92	+1	2441402..2441845	-	147	126642136	-	A1S_2091	-	hypothetical protein
2022	 41.90	0	2442484..2444946	-	820	126642137	-	A1S_2092	-	aminopeptidase N
2023	 39.15	0	2445409..2445666	+	85	126642138	-	A1S_2093	-	hypothetical protein
2024	 37.64	0	2445884..2446975	+	363	126642139	-	A1S_2094	-	hypothetical protein
2025	 40.09	0	2447156..2447836	+	226	126642140	-	A1S_2095	-	hydoxyethylthiazole kinase
2026	 36.56	-1	2447958..2448236	-	92	126642141	-	A1S_2096	-	putative 5-carboxymethyl-2-hydroxymuconate delta isomerase
2027	 38.96	0	2448361..2449905	-	514	126642142	-	A1S_2097	-	putative helicase
2028	 44.83	+1	2450433..2451476	+	347	126642143	-	A1S_2098	-	putative alcohol dehydrogenase
2029	 38.20	0	2451672..2452226	+	184	126642144	-	A1S_2099	-	hypothetical protein
2030	 42.11	0	2452414..2452641	+	75	126642145	-	A1S_2100	-	hypothetical protein
2031	 41.91	0	2452638..2453570	-	310	126642146	-	A1S_2101	-	putative transcriptional regulator
2032	 43.87	+1	2454260..2455483	+	407	126642147	-	A1S_2102	-	aldehyde dehydrogenase 1
2033	 42.09	0	2455897..2457141	+	414	126642148	-	A1S_2103	-	putative transport protein
2034	 42.11	0	2457302..2458543	+	413	126642149	-	A1S_2104	-	ethanolamine ammonia-lyase heavy chain
2035	 41.67	0	2458554..2458877	+	107	126642150	-	A1S_2105	-	ethanolamine ammonia-lyase
2036	 40.04	0	2458922..2459368	+	148	126642151	-	A1S_2106	-	ethanolamine ammonia-lyase light chain
2037	 37.19	0	2459659..2460255	+	198	126642152	-	A1S_2107	-	glutamine amidotransferase
2038	 41.78	0	2460657..2462384	-	575	126642153	-	A1S_2108	-	glutaminyl-tRNA synthetase
2039	 40.68	0	2462709..2463062	+	117	126642154	-	A1S_2109	-	peptidyl-prolyl cis-trans isomerase precursor
2040	 37.20	0	2463306..2463797	+	163	126642155	-	A1S_2110	-	UDP-23-diacylglucosamine hydrolase
2041	 38.20	0	2464283..2464816	+	177	126642156	-	A1S_2111	-	dihydropteridine reductase
2042	 35.05	-1	2464986..2465627	-	213	126642157	-	A1S_2112	-	putative integral membrane protein
2043	 38.62	0	2466444..2467256	-	270	126642158	-	A1S_2113	-	delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
2044	 38.92	0	2467394..2468503	-	369	126642159	-	A1S_2114	-	methyl-directed mismatch repair enzyme
2045	 41.82	0	2468785..2469267	-	160	126642160	-	A1S_2115	-	methyl-directed mismatch repair enzyme
2046	 39.25	0	2469338..2469793	-	151	126642161	-	A1S_2116	-	hypothetical protein
2047	 35.91	-1	2470102..2470839	+	245	126642162	-	A1S_2117	-	putative pseudouridylate synthase
2048	 33.76	-1	2471026..2471259	+	77	126642163	-	A1S_2118	-	hypothetical protein
2049	 35.59	-1	2471357..2471800	+	147	126642164	-	A1S_2119	-	putative acetyltransferase
2050	 38.94	0	2471793..2472398	-	201	126642165	-	A1S_2120	-	16S rRNA pseudouridylate 516 synthase
2051	 40.08	0	2473049..2473522	+	157	126642166	-	A1S_2121	-	hypothetical protein
2052	 39.87	0	2473573..2474352	-	259	126642167	-	A1S_2122	-	transcriptional regulator
2053	 34.84	-1	2474719..2475513	-	264	126642168	-	A1S_2123	-	putative signal peptide
2054	 43.34	0	2476439..2477527	+	362	126642169	-	A1S_2124	-	major facilitator superfamily permease
2055	 36.94	0	2477553..2478578	-	341	126642170	-	A1S_2125	-	VIC family potassium channel protein
2056	 41.84	0	2479337..2480077	-	246	126642171	-	A1S_2126	-	aconitate hydratase 2
2057	 42.84	0	2480062..2480808	-	248	126642172	-	A1S_2127	-	aconitate hydratase 2
2058	 41.33	0	2480961..2481698	-	245	126642173	-	A1S_2128	-	aconitate hydratase 2
2059	 35.42	-1	2482233..2482568	-	111	126642174	-	A1S_2129	-	hypothetical protein
2060	 39.55	0	2482751..2486194	-	1147	126642175	-	A1S_2130	-	hypothetical protein
2061	 36.42	-1	2486278..2487120	-	280	126642176	-	A1S_2131	-	hypothetical protein
2062	 39.65	0	2487270..2489927	-	885	126642177	-	A1S_2132	-	putative outer membrane protein
2063	 39.39	0	2490444..2491367	+	307	126642178	-	A1S_2133	-	hypothetical protein
2064	 40.62	0	2491639..2492118	+	159	126642179	-	A1S_2134	-	putative ubiquinone biosynthesis protein
2065	 36.16	-1	2492166..2492660	-	164	126642180	-	A1S_2135	-	putative signal peptide
2066	 38.73	0	2493398..2494546	+	382	126642181	-	A1S_2136	-	glutamine synthetase
2067	 41.39	0	2494624..2495169	-	181	126642182	-	A1S_2137	-	hypothetical protein
2068	 39.87	0	2495352..2497889	-	845	126642183	-	A1S_2138	-	hypothetical protein
2069	 41.54	0	2498045..2498617	-	190	126642184	-	A1S_2139	-	hypothetical protein
2070	 42.31	0	2498664..2500580	-	638	126642185	-	A1S_2140	-	potassium-transporting ATPase subunit B
2071	 40.68	0	2500712..2501296	-	194	126642186	-	A1S_2141	-	potassium-transporting ATPase A chain
2072	 41.28	0	2501365..2502345	-	326	126642187	-	A1S_2142	-	hypothetical protein
2073	 36.59	-1	2502665..2503033	-	122	126642188	-	A1S_2143	-	putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
2074	 42.42	0	2503074..2503370	-	98	126642189	-	A1S_2144	-	dihydroneopterin aldolase
2075	 39.19	0	2503470..2504648	-	392	126642190	-	A1S_2145	-	putative kinase
2076	 38.48	0	2504826..2505602	-	258	126642191	-	A1S_2146	-	molybdopterin biosynthesis protein
2077	 42.04	0	2505880..2506350	+	156	126642192	-	A1S_2147	-	flavin reductase-like protein
2078	 39.96	0	2506395..2508053	-	552	126642193	-	A1S_2148	-	putative acetyl-CoA synthetase/AMP-(fatty) acid ligase
2079	 45.22	+1	2508259..2509251	-	330	126642194	-	A1S_2149	-	putative acyl CoA dehydrogenase oxidoreductase protein
2080	 44.34	+1	2509414..2510076	-	220	126642195	-	A1S_2150	-	oxidoreductase
2081	 38.53	0	2510350..2510580	+	76	126642196	-	A1S_2151	-	AraC family transcriptional regulator
2082	 35.78	-1	2510768..2511379	+	203	126642197	-	A1S_2152	-	AraC family transcriptional regulator
2083	 41.22	0	2511387..2512007	-	206	126642198	-	A1S_2153	-	methyl transferase
2084	 43.21	0	2512208..2513098	-	296	126642199	-	A1S_2154	-	peptide chain release factor 1
2085	 37.87	0	2513487..2514170	-	227	126642200	-	A1S_2155	-	ThiJ/PfpI
2086	 35.52	-1	2514662..2515348	+	228	126642201	-	A1S_2156	-	regulatory protein LysR:LysR, substrate-binding
2087	 47.09	+1	2515592..2515969	+	125	126642202	-	A1S_2157	-	putative signal peptide
2088	 41.39	0	2516841..2517845	+	334	126642203	-	A1S_2158	-	putative monooxygenase
2089	 35.46	-1	2517992..2518555	+	187	126642204	-	A1S_2159	-	hypothetical protein
2090	 39.19	0	2519057..2520235	-	392	126642205	-	A1S_2160	-	haemin storage system HmsR protein
2091	 37.38	0	2520304..2521836	-	510	126642206	-	A1S_2161	-	putative hemin storage signal peptide protein
2092	 39.48	0	2522133..2524376	-	747	126642207	-	A1S_2162	-	hypothetical protein
2093	 40.86	0	2524957..2525793	-	278	162286728	-	A1S_2163	-	hypothetical protein
2094	 42.48	0	2526033..2528327	+	764	126642209	-	A1S_2164	-	phosphoenolpyruvate synthase
2095	 34.78	-1	2528458..2529147	+	229	126642210	-	A1S_2165	-	hypothetical protein
2096	 40.77	0	2529535..2530515	+	326	126642211	-	A1S_2166	-	cytochrome o ubiquinol oxidase subunit II
2097	 42.42	0	2530585..2532510	+	641	126642212	-	A1S_2167	-	cytochrome o ubiquinol oxidase subunit I
2098	 40.00	0	2532611..2533135	+	174	126642213	-	A1S_2168	-	cytochrome o ubiquinol oxidase subunit III
2099	 38.67	0	2533240..2533464	+	74	126642214	-	A1S_2169	-	cytochrome o ubiquinol oxidase subunit IV
2100	 37.74	0	2533673..2534353	+	226	126642215	-	A1S_2170	-	protoheme IX farnesyltransferase
2101	 41.67	0	2534598..2534921	+	107	126642216	rpsF	A1S_2171	-	30S ribosomal protein S6
2102	 42.54	0	2534933..2535160	+	75	126642217	-	A1S_2172	-	30S ribosomal protein S18
40.16	MEAN

3.49	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.