IslandPathversion 1.0

IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.16 STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1893	 34.78	-1	2275300..2275782	+	160	126642008	-	A1S_1963	-	regulatory protein
1894	 37.22	0	2276374..2277093	+	239	126642009	-	A1S_1964	-	putative signal peptide
1895	 36.54	-1	2277148..2277834	-	228	126642010	-	A1S_1965	-	UDP-N-acetylglucosamine acyltransferase
1896	 38.10	0	2277933..2278373	-	146	126642011	-	A1S_1966	-	hypothetical protein
1897	 37.79	0	2278425..2279366	-	313	126642012	-	A1S_1967	-	hypothetical protein
1898	 34.37	-1	2279500..2279982	-	160	126642013	-	A1S_1968	-	putative outer membrane protein (OmpH)
1899	 36.95	0	2280045..2282534	-	829	126642014	-	A1S_1969	-	putative outer membrane protein
1900	 37.80	0	2282593..2283735	-	380	126642015	-	A1S_1970	-	putative membrane-associated Zn-dependent proteases 1
1901	 38.85	0	2283950..2285146	-	398	162286729	-	A1S_1971	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1902	 39.52	0	2285147..2285890	-	247	126642017	-	A1S_1972	-	phosphatidate cytidylyltransferase
1903	 40.66	0	2285971..2286639	-	222	126642018	-	A1S_1973	-	undecaprenyl pyrophosphate synthetase
1904	 39.08	0	2286729..2287163	-	144	126642019	-	A1S_1974	-	ribosome releasing factor
1905	 40.71	0	2287369..2288019	-	216	126642020	-	A1S_1975	-	uridylate kinase
1906	 40.55	0	2288149..2289492	-	447	126642021	-	A1S_1976	-	hypothetical protein
1907	 39.86	0	2290114..2290941	+	275	126642022	-	A1S_1977	-	two-component regulatory system sensory kinase
1908	 42.36	0	2290970..2292421	+	483	126642023	-	A1S_1978	-	response regulator protein
1909	 34.39	-1	2292781..2293350	+	189	126642024	-	A1S_1979	-	putative transcriptional regulator
1910	 39.09	0	2293550..2294383	+	277	126642025	-	A1S_1980	-	ornithine carbamoyltransferase
1911	 33.71	-1	2294578..2295102	+	174	126642026	-	A1S_1981	-	hypothetical protein
1912	 38.93	0	2295099..2295545	-	148	126642027	-	A1S_1982	-	2C-methyl-D-erythritol 24-cyclodiphosphate synthase
1913	 36.52	-1	2295733..2296329	+	198	126642028	-	A1S_1983	-	putative signal peptide
1914	 39.33	0	2296376..2297509	-	377	126642029	-	A1S_1984	-	D-amino acid dehydrogenase small subunit
1915	 34.65	-1	2298031..2298486	-	151	126642030	-	A1S_1985	-	hypothetical protein
1916	 42.00	0	2299907..2301175	-	422	126642031	fumC	A1S_1986	-	fumarate hydratase
1917	 36.34	-1	2301416..2302279	-	287	126642032	-	A1S_1987	-	putative UDP-galactose 4-epimerase (GalE-like)
1918	 45.26	+1	2302489..2302857	+	122	126642033	-	A1S_1988	-	putative intracellular sulfur oxidation protein (DsrE-like)
1919	 36.59	-1	2302977..2303252	+	91	126642034	-	A1S_1989	-	hypothetical protein
1920	 34.74	-1	2303270..2303554	+	94	126642035	-	A1S_1990	-	hypothetical protein
1921	 38.14	0	2303574..2303885	+	103	126642036	-	A1S_1991	-	putative sulfite reductase
1922	 40.07	0	2303890..2304483	-	197	126642037	-	A1S_1992	-	DMT family permease
1923	 41.29	0	2305086..2306279	+	397	126642038	-	A1S_1993	-	regulatory protein GntR HTH
1924	 39.73	0	2306276..2306713	-	145	126642039	-	A1S_1994	-	hypothetical protein
1925	 40.86	0	2306967..2307989	-	340	126642040	-	A1S_1995	-	molybdopterin biosynthesis protein
1926	 43.55	0	2308202..2308837	-	211	126642041	moaC	A1S_1996	-	bifunctional molybdenum cofactor biosynthesis protein C/molybdopterin-binding protein
1927	 44.02	+1	2309149..2309541	-	130	126642042	-	A1S_1997	-	molybdopterin converting factor large subunit
1928	 36.47	-1	2309641..2309895	-	84	126642043	-	A1S_1998	-	hypothetical protein
1929	 37.38	0	2309896..2310735	-	279	126642044	-	A1S_1999	-	molybdopterin biosynthesis protein A
1930	 40.29	0	2311162..2313402	-	746	126642045	-	A1S_2000	-	hypothetical protein
1931	 34.74	-1	2313586..2314155	-	189	126642046	-	A1S_2001	-	molybdopterin-guanine dinucleotide synthase
1932	 42.27	0	2314212..2316752	-	846	126642047	-	A1S_2002	-	nitrate reductase large subunit
1933	 41.72	0	2317011..2317439	-	142	126642048	-	A1S_2003	-	putative nitrate reductase
1934	 42.22	0	2317591..2318445	-	284	126642049	-	A1S_2004	-	putative nitrate reductase
1935	 43.67	+1	2318650..2320962	-	770	126642050	-	A1S_2005	-	nitrite reductase
1936	 38.50	0	2322099..2322524	+	141	126642051	-	A1S_2006	-	response regulator protein
1937	 38.13	0	2322723..2323535	+	270	126642052	-	A1S_2007	-	putative nitrate transport protein (NasF)
1938	 37.75	0	2324041..2325195	+	384	126642053	-	A1S_2008	-	DNA repair protein
1939	 41.19	0	2325467..2325886	+	139	126642054	-	A1S_2009	-	3-dehydroquinate dehydratase
1940	 45.05	+1	2325940..2326323	+	127	126642055	-	A1S_2010	-	biotin carboxyl carrier protein of acetyl-CoA carboxylase (BCCP)
1941	 41.31	0	2326457..2327710	+	417	126642056	-	A1S_2011	-	biotin carboxylase (A subunit of acetyl-CoA carboxylase)
1942	 38.31	0	2327765..2328226	-	153	126642057	-	A1S_2012	-	putative signal peptide
1943	 36.81	0	2328416..2329507	-	363	126642058	-	A1S_2013	-	MFS superfamily metabolite transporter
1944	 37.63	0	2331032..2331682	+	216	126642059	-	A1S_2014	-	hypothetical protein
1945	 35.90	-1	2331816..2332946	+	376	126642060	-	A1S_2015	-	DNA-directed DNA polymerase
1946	 43.05	0	2333929..2334381	-	150	126642061	-	A1S_2016	-	Phage-related lysozyme
1947	 44.13	+1	2334764..2337958	-	1064	126642062	-	A1S_2017	-	hypothetical protein
1948	 39.72	0	2339515..2344290	-	1591	126642063	-	A1S_2018	-	tail tape meausure protein
1949	 38.85	0	2345534..2345968	-	144	126642064	-	A1S_2019	-	hypothetical protein
1950	 38.36	0	2346031..2346189	-	52	126642065	-	A1S_2020	-	hypothetical protein
1951	 41.83	0	2347124..2347900	-	258	126642066	-	A1S_2021	-	hypothetical protein
1952	 42.78	0	2348094..2349194	-	366	126642067	-	A1S_2022	-	putative tail fiber
1953	 40.88	0	2350572..2350982	-	136	126642068	-	A1S_2023	-	hypothetical protein
1954	 40.11	0	2351728..2352096	-	122	126642069	-	A1S_2024	-	glutamate 5-kinase
1955	 41.76	0	2353223..2353744	-	173	126642070	-	A1S_2025	-	hypothetical protein
1956	 37.28	0	2353927..2354154	-	75	126642071	-	A1S_2026	-	hypothetical protein
1957	 43.07	0	2354206..2354883	-	225	126642072	-	A1S_2027	-	hypothetical protein
1958	 40.75	0	2356274..2357257	-	327	126642073	-	A1S_2028	-	phage putative head morphogenesis protein
1959	 40.69	0	2357379..2358710	-	443	126642074	-	A1S_2029	-	hypothetical protein
1960	 43.53	0	2358827..2360179	-	450	126642075	-	A1S_2030	-	putative phage associated protein
1961	 38.35	0	2360244..2360642	-	132	126642076	-	A1S_2031	-	hypothetical protein
1962	 42.96	0	2360773..2361312	-	179	126642077	-	A1S_2032	-	hypothetical protein
1963	 37.22	0	2361383..2361742	-	119	126642078	-	A1S_2033	-	hypothetical protein
1964	 38.61	0	2364153..2364815	-	220	126642079	-	A1S_2034	-	hypothetical protein
1965	 42.95	0	2366469..2366780	-	103	126642080	-	A1S_2035	-	hypothetical protein
1966	 39.97	0	2368931..2370391	-	486	126642081	-	A1S_2036	-	DNA cytosine methyltransferase
1967	 36.77	0	2371894..2372358	+	154	126642082	-	A1S_2037	-	EsvI
1968	 41.16	0	2374436..2374831	+	131	126642083	-	A1S_2038	-	hypothetical protein
1969	 41.71	0	2375168..2376289	+	373	126642084	-	A1S_2039	-	hypothetical protein
1970	 35.24	-1	2378973..2380022	-	349	126642085	-	A1S_2040	-	putative phage integrase
1971	 36.42	-1	2380734..2381543	-	269	126642086	-	A1S_2041	-	hypothetical protein
1972	 28.60	-2	2382029..2382493	+	154	126642087	-	A1S_2042	-	TetR family transcriptional regulator
1973	 37.53	0	2383324..2384442	+	372	126642088	-	A1S_2043	-	putative iron-regulated membrane protein
1974	 37.52	0	2384679..2385275	+	198	126642089	-	A1S_2044	-	putative ferredoxin-dependent glutamate synthase
1975	 41.37	0	2385392..2385640	+	82	126642090	-	A1S_2045	-	putative ferredoxin-dependent glutamate synthase
1976	 38.79	0	2385637..2386278	+	213	126642091	-	A1S_2046	-	putative ferredoxin-dependent glutamate synthase
1977	 40.19	0	2386320..2387150	-	276	126642092	-	A1S_2047	-	putative lysophospholipase
1978	 41.16	0	2387348..2387692	-	114	126642093	-	A1S_2048	-	hypothetical protein
1979	 39.00	0	2387808..2388407	-	199	126642094	-	A1S_2049	-	hypothetical protein
1980	 37.24	0	2388484..2389353	-	289	126642095	-	A1S_2050	-	UDP-N-acetylenolpyruvoylglucosamine reductase FAD-binding
1981	 38.60	0	2389538..2389936	-	132	126642096	-	A1S_2051	-	putative phosphotyrosine protein phosphatase
1982	 39.71	0	2390342..2391376	-	344	126642097	-	A1S_2052	-	hypothetical protein
1983	 40.77	0	2391935..2392969	+	344	126642098	-	A1S_2053	-	putative iron-containing alcohol dehydrogenase
1984	 37.10	0	2393059..2393403	+	114	126642099	-	A1S_2054	-	putative thioesterase
1985	 43.85	+1	2393452..2395524	-	690	126642100	-	A1S_2055	-	phospholipase C
1986	 40.66	0	2396004..2397914	-	636	126642101	-	A1S_2056	-	DNA polymerase III tau and gamma subunits (DNA elongation factor III)
1987	 40.87	0	2398286..2399692	-	468	126642102	-	A1S_2057	-	major facilitator superfamily methyl viologen resistance protein
1988	 37.69	0	2399940..2400467	+	175	126642103	-	A1S_2058	-	putative transcriptional regulator
1989	 42.19	0	2400515..2401564	-	349	126642104	-	A1S_2059	-	putative esterase
1990	 39.32	0	2401846..2402463	-	205	126642105	-	A1S_2060	-	putative dehydratase
1991	 41.86	0	2402775..2404052	-	425	126642106	fabG	A1S_2061	-	3-ketoacyl-(acyl-carrier-protein) reductase
1992	 43.10	0	2404681..2405970	+	429	126642107	-	A1S_2062	-	acetyl-CoA acetyltransferase
40.16	MEAN

3.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.