IslandPathversion 1.0

IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.16 STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1850	 39.63	0	2224110..2226857	-	915	126641965	-	A1S_1920	-	putative metalloprotease
1851	 38.32	0	2227301..2229226	-	641	126641966	-	A1S_1921	-	ferrichrome-iron receptor
1852	 40.42	0	2229740..2230642	+	300	126641967	-	A1S_1922	-	putative sugar kinase protein
1853	 37.57	0	2231083..2231601	+	172	126641968	-	A1S_1923	-	hypothetical protein
1854	 41.67	0	2232289..2233764	+	491	126641969	-	A1S_1924	-	cytochrome d terminal oxidase polypeptide subunit I
1855	 43.15	0	2233848..2234906	+	352	126641970	-	A1S_1925	-	cytochrome d terminal oxidase polypeptide subunit II
1856	 44.21	+1	2235037..2235321	+	94	126641971	-	A1S_1926	-	hypothetical protein
1857	 32.69	-2	2235334..2235801	-	155	126641972	-	A1S_1927	-	putative acetyltransferase
1858	 39.65	0	2235931..2236500	-	189	126641973	-	A1S_1928	-	putative signal peptide
1859	 37.35	0	2236828..2237424	-	198	126641974	-	A1S_1929	-	putative oxidoreductase
1860	 38.96	0	2237612..2238517	-	301	126641975	-	A1S_1930	-	cell division protein
1861	 36.84	0	2238826..2239053	-	75	126641976	-	A1S_1931	-	hypothetical protein
1862	 34.44	-1	2239253..2239612	-	119	126641977	-	A1S_1932	-	hypothetical protein
1863	 41.03	0	2239828..2240061	+	77	126641978	-	A1S_1933	-	hypothetical protein
1864	 36.53	-1	2240397..2240771	+	124	126641979	-	A1S_1934	-	hypothetical protein
1865	 36.58	-1	2241005..2241343	+	112	126641980	-	A1S_1935	-	hypothetical protein
1866	 40.44	0	2241392..2242306	-	304	126641981	-	A1S_1936	-	acetylornithine aminotransferase
1867	 42.11	0	2242828..2243169	+	113	126641982	-	A1S_1937	-	putative glutaredoxin-related protein
1868	 33.95	-1	2243216..2243539	-	107	126641983	-	A1S_1938	-	hypothetical protein
1869	 37.39	0	2243972..2244685	+	237	126641984	-	A1S_1939	-	putative transcriptional regulator
1870	 37.57	0	2244738..2245445	-	235	126641985	-	A1S_1940	-	methionine aminopeptidase
1871	 37.51	0	2246062..2247186	+	374	126641986	-	A1S_1941	-	branched chain amino acid transporter
1872	 37.60	0	2247423..2247797	+	124	126641987	-	A1S_1942	-	hypothetical protein
1873	 34.35	-1	2248336..2248728	-	130	126641988	-	A1S_1943	-	hypothetical protein
1874	 35.05	-1	2249031..2249789	+	252	126641989	-	A1S_1944	-	Alpha/beta hydrolase
1875	 41.62	0	2250266..2252872	+	868	126641990	-	A1S_1945	-	phosphotransferase system fructose-specific EI/HPr/EIIA components
1876	 39.54	0	2252965..2253834	+	289	126641991	-	A1S_1946	-	1-phosphofructokinase
1877	 39.50	0	2253887..2255539	+	550	126641992	-	A1S_1947	-	phosphotransferase system fructose-specific IIBC component
1878	 33.55	-1	2256207..2256671	+	154	126641993	-	A1S_1948	-	MarR family multidrug resistance pump transcriptional regulator
1879	 37.95	0	2257848..2259776	+	642	126641994	-	A1S_1949	-	putative diguanylate cyclase/phosphodiesterase
1880	 33.92	-1	2260007..2260345	+	112	126641995	-	A1S_1950	-	putative universal stress protein
1881	 38.38	0	2260400..2261707	-	435	126641996	-	A1S_1951	-	hypothetical protein
1882	 34.39	-1	2262356..2262826	+	156	126641997	-	A1S_1952	-	hypothetical protein
1883	 37.61	0	2263265..2264527	+	420	126641998	-	A1S_1953	-	putative sulfate transporter
1884	 39.98	0	2264565..2265467	-	300	126641999	-	A1S_1954	-	serine proteinase
1885	 34.81	-1	2266983..2267657	-	224	126642000	-	A1S_1955	-	hypothetical protein
1886	 39.08	0	2267737..2269077	-	446	126642001	-	A1S_1956	-	putative amino acid permease
1887	 38.76	0	2269184..2270362	-	392	126642002	-	A1S_1957	-	putative L-kynurenine hydrolase
1888	 30.22	-2	2270581..2271030	+	149	126642003	-	A1S_1958	-	putative transcriptional regulator
1889	 35.67	-1	2271143..2271613	+	156	126642004	-	A1S_1959	-	acetyltransferase
1890	 37.11	0	2273150..2273626	+	158	126642005	-	A1S_1960	-	HAD superfamily hydrolase
1891	 40.66	0	2273779..2274051	+	90	126642006	-	A1S_1961	-	heat shock protein 15
1892	 39.59	0	2274272..2275246	+	324	126642007	recA	A1S_1962	-	recombinase A
1893	 34.78	-1	2275300..2275782	+	160	126642008	-	A1S_1963	-	regulatory protein
1894	 37.22	0	2276374..2277093	+	239	126642009	-	A1S_1964	-	putative signal peptide
1895	 36.54	-1	2277148..2277834	-	228	126642010	-	A1S_1965	-	UDP-N-acetylglucosamine acyltransferase
1896	 38.10	0	2277933..2278373	-	146	126642011	-	A1S_1966	-	hypothetical protein
1897	 37.79	0	2278425..2279366	-	313	126642012	-	A1S_1967	-	hypothetical protein
1898	 34.37	-1	2279500..2279982	-	160	126642013	-	A1S_1968	-	putative outer membrane protein (OmpH)
1899	 36.95	0	2280045..2282534	-	829	126642014	-	A1S_1969	-	putative outer membrane protein
1900	 37.80	0	2282593..2283735	-	380	126642015	-	A1S_1970	-	putative membrane-associated Zn-dependent proteases 1
1901	 38.85	0	2283950..2285146	-	398	162286729	-	A1S_1971	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1902	 39.52	0	2285147..2285890	-	247	126642017	-	A1S_1972	-	phosphatidate cytidylyltransferase
1903	 40.66	0	2285971..2286639	-	222	126642018	-	A1S_1973	-	undecaprenyl pyrophosphate synthetase
1904	 39.08	0	2286729..2287163	-	144	126642019	-	A1S_1974	-	ribosome releasing factor
1905	 40.71	0	2287369..2288019	-	216	126642020	-	A1S_1975	-	uridylate kinase
1906	 40.55	0	2288149..2289492	-	447	126642021	-	A1S_1976	-	hypothetical protein
1907	 39.86	0	2290114..2290941	+	275	126642022	-	A1S_1977	-	two-component regulatory system sensory kinase
1908	 42.36	0	2290970..2292421	+	483	126642023	-	A1S_1978	-	response regulator protein
1909	 34.39	-1	2292781..2293350	+	189	126642024	-	A1S_1979	-	putative transcriptional regulator
1910	 39.09	0	2293550..2294383	+	277	126642025	-	A1S_1980	-	ornithine carbamoyltransferase
1911	 33.71	-1	2294578..2295102	+	174	126642026	-	A1S_1981	-	hypothetical protein
1912	 38.93	0	2295099..2295545	-	148	126642027	-	A1S_1982	-	2C-methyl-D-erythritol 24-cyclodiphosphate synthase
1913	 36.52	-1	2295733..2296329	+	198	126642028	-	A1S_1983	-	putative signal peptide
1914	 39.33	0	2296376..2297509	-	377	126642029	-	A1S_1984	-	D-amino acid dehydrogenase small subunit
1915	 34.65	-1	2298031..2298486	-	151	126642030	-	A1S_1985	-	hypothetical protein
1916	 42.00	0	2299907..2301175	-	422	126642031	fumC	A1S_1986	-	fumarate hydratase
1917	 36.34	-1	2301416..2302279	-	287	126642032	-	A1S_1987	-	putative UDP-galactose 4-epimerase (GalE-like)
1918	 45.26	+1	2302489..2302857	+	122	126642033	-	A1S_1988	-	putative intracellular sulfur oxidation protein (DsrE-like)
1919	 36.59	-1	2302977..2303252	+	91	126642034	-	A1S_1989	-	hypothetical protein
1920	 34.74	-1	2303270..2303554	+	94	126642035	-	A1S_1990	-	hypothetical protein
1921	 38.14	0	2303574..2303885	+	103	126642036	-	A1S_1991	-	putative sulfite reductase
1922	 40.07	0	2303890..2304483	-	197	126642037	-	A1S_1992	-	DMT family permease
1923	 41.29	0	2305086..2306279	+	397	126642038	-	A1S_1993	-	regulatory protein GntR HTH
1924	 39.73	0	2306276..2306713	-	145	126642039	-	A1S_1994	-	hypothetical protein
1925	 40.86	0	2306967..2307989	-	340	126642040	-	A1S_1995	-	molybdopterin biosynthesis protein
1926	 43.55	0	2308202..2308837	-	211	126642041	moaC	A1S_1996	-	bifunctional molybdenum cofactor biosynthesis protein C/molybdopterin-binding protein
1927	 44.02	+1	2309149..2309541	-	130	126642042	-	A1S_1997	-	molybdopterin converting factor large subunit
1928	 36.47	-1	2309641..2309895	-	84	126642043	-	A1S_1998	-	hypothetical protein
1929	 37.38	0	2309896..2310735	-	279	126642044	-	A1S_1999	-	molybdopterin biosynthesis protein A
1930	 40.29	0	2311162..2313402	-	746	126642045	-	A1S_2000	-	hypothetical protein
1931	 34.74	-1	2313586..2314155	-	189	126642046	-	A1S_2001	-	molybdopterin-guanine dinucleotide synthase
1932	 42.27	0	2314212..2316752	-	846	126642047	-	A1S_2002	-	nitrate reductase large subunit
1933	 41.72	0	2317011..2317439	-	142	126642048	-	A1S_2003	-	putative nitrate reductase
1934	 42.22	0	2317591..2318445	-	284	126642049	-	A1S_2004	-	putative nitrate reductase
1935	 43.67	+1	2318650..2320962	-	770	126642050	-	A1S_2005	-	nitrite reductase
1936	 38.50	0	2322099..2322524	+	141	126642051	-	A1S_2006	-	response regulator protein
1937	 38.13	0	2322723..2323535	+	270	126642052	-	A1S_2007	-	putative nitrate transport protein (NasF)
1938	 37.75	0	2324041..2325195	+	384	126642053	-	A1S_2008	-	DNA repair protein
1939	 41.19	0	2325467..2325886	+	139	126642054	-	A1S_2009	-	3-dehydroquinate dehydratase
1940	 45.05	+1	2325940..2326323	+	127	126642055	-	A1S_2010	-	biotin carboxyl carrier protein of acetyl-CoA carboxylase (BCCP)
1941	 41.31	0	2326457..2327710	+	417	126642056	-	A1S_2011	-	biotin carboxylase (A subunit of acetyl-CoA carboxylase)
1942	 38.31	0	2327765..2328226	-	153	126642057	-	A1S_2012	-	putative signal peptide
1943	 36.81	0	2328416..2329507	-	363	126642058	-	A1S_2013	-	MFS superfamily metabolite transporter
1944	 37.63	0	2331032..2331682	+	216	126642059	-	A1S_2014	-	hypothetical protein
1945	 35.90	-1	2331816..2332946	+	376	126642060	-	A1S_2015	-	DNA-directed DNA polymerase
1946	 43.05	0	2333929..2334381	-	150	126642061	-	A1S_2016	-	Phage-related lysozyme
1947	 44.13	+1	2334764..2337958	-	1064	126642062	-	A1S_2017	-	hypothetical protein
1948	 39.72	0	2339515..2344290	-	1591	126642063	-	A1S_2018	-	tail tape meausure protein
1949	 38.85	0	2345534..2345968	-	144	126642064	-	A1S_2019	-	hypothetical protein
40.16	MEAN

3.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.