IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.16   STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1768	 41.00	0	2140247..2140507	-	86	126641883	-	A1S_1838	-	major facilitator superfamily permease
1769	 44.82	+1	2140857..2142527	+	556	126641884	-	A1S_1839	-	dihydroxy-acid dehydratase
1770	 38.40	0	2142677..2143327	+	216	126641885	-	A1S_1840	-	GntR family transcriptional regulator
1771	 37.23	0	2143395..2144087	-	230	126641886	-	A1S_1841	-	hypothetical protein
1772	 35.85	-1	2144271..2144945	-	224	126641887	-	A1S_1842	-	transcription regulator LysR
1773	 43.37	0	2145358..2146254	+	298	126641888	-	A1S_1843	-	muconate cycloisomerase I
1774	 39.93	0	2146435..2146707	+	90	126641889	-	A1S_1844	-	CatC3
1775	 44.04	+1	2146959..2147789	+	276	126641890	-	A1S_1845	-	CatA3
1776	 48.47	+2	2148074..2148595	+	173	126641891	-	A1S_1846	-	3-oxoacid CoA-transferase subunit A
1777	 48.26	+2	2148692..2149267	+	191	126641892	-	A1S_1847	-	3-oxoadipate CoA-transferase subunit B
1778	 53.12	+2	2149280..2149471	+	63	126641893	-	A1S_1848	-	Beta-ketoadipyl CoA thiolase
1779	 46.62	+1	2149642..2150499	+	285	126641894	-	A1S_1849	-	beta-ketoadipyl CoA thiolase
1780	 40.89	0	2150615..2151289	+	224	126641895	-	A1S_1850	-	esterase
1781	 39.47	0	2151782..2154013	+	743	126641896	-	A1S_1851	-	penicillin G amidase
1782	 40.69	0	2154085..2155470	-	461	126641897	-	A1S_1852	-	phenylacetaldehyde dehydrogenase
1783	 36.90	0	2155606..2156643	-	345	126641898	-	A1S_1853	-	hypothetical protein
1784	 39.32	0	2156968..2159157	-	729	126641899	-	A1S_1854	-	Cu2+-containing amine oxidase
1785	 35.13	-1	2159492..2160160	-	222	126641900	-	A1S_1855	-	putative transcriptional regulator
1786	 40.55	0	2160605..2161408	-	267	126641901	-	A1S_1856	-	p-hydroxyphenylacetate hydroxylase C1:reductase component
1787	 41.98	0	2161607..2162497	-	296	126641902	-	A1S_1857	-	vanillate O-demethylase oxidoreductase
1788	 44.27	+1	2162595..2163179	-	194	126641903	-	A1S_1858	-	Short-chain dehydrogenase/reductase SDR
1789	 40.70	0	2163543..2163827	-	94	126641904	-	A1S_1859	-	aromatic-ring-hydroxylating dioxygenase beta subunit
1790	 43.39	0	2163838..2164662	-	274	126641905	-	A1S_1860	-	ring hydroxylating dioxygenase Rieske (2Fe-2S) protein
1791	 41.29	0	2164713..2165114	-	133	126641906	-	A1S_1861	-	benzoate dioxygenase large subunit
1792	 37.67	0	2165144..2165581	-	145	126641907	-	A1S_1862	-	hypothetical protein
1793	 43.83	+1	2165682..2166005	-	107	126641908	-	A1S_1863	-	hypothetical protein
1794	 43.69	+1	2166070..2166957	-	295	126641909	-	A1S_1864	-	Acyl-CoA dehydrogenase-like protein
1795	 40.44	0	2167255..2168169	-	304	126641910	-	A1S_1865	-	Glu-tRNA amidotransferase
1796	 36.32	-1	2168514..2168981	+	155	126641911	-	A1S_1866	-	MarR family multidrug resistance pump transcriptional regulator
1797	 40.64	0	2169460..2170731	+	423	126641912	-	A1S_1867	-	major facilitator transporter
1798	 40.10	0	2170898..2171473	+	191	126641913	-	A1S_1868	-	porin for benzoate transport (BenP)
1799	 38.44	0	2171470..2172096	+	208	126641914	-	A1S_1869	-	putative porin for benzoate transport (BenP)
1800	 40.32	0	2172133..2172876	-	247	126641915	-	A1S_1870	-	short chain dehydrogenase
1801	 40.66	0	2172892..2173437	-	181	126641916	-	A1S_1871	-	putative phosphoglycerate mutase related protein
1802	 40.02	0	2173587..2174483	-	298	126641917	-	A1S_1872	-	putative phosphotransferase
1803	 42.29	0	2174728..2175777	-	349	126641918	-	A1S_1873	-	putative acyl-CoA dehydrogenase
1804	 36.16	-1	2176277..2176984	+	235	126641919	-	A1S_1874	-	LysR family transcriptional regulator
1805	 39.81	0	2177114..2177839	+	241	126641920	-	A1S_1875	-	pca operon regulatory protein
1806	 35.37	-1	2177932..2178570	-	212	126641921	-	A1S_1876	-	putative metallo-beta lactamase
1807	 34.71	-1	2178803..2179165	-	120	126641922	-	A1S_1877	-	hypothetical protein
1808	 40.32	0	2179221..2179535	-	104	126641923	-	A1S_1878	-	hypothetical protein
1809	 35.92	-1	2179770..2180195	-	141	126641924	-	A1S_1879	-	hypothetical protein
1810	 43.90	+1	2180867..2183203	-	778	126641925	-	A1S_1880	-	pyrroloquinoline-quinone QuiA
1811	 40.78	0	2183379..2184533	-	384	126641926	-	A1S_1881	-	porin
1812	 40.79	0	2184758..2186044	-	428	126641927	-	A1S_1882	-	3-dehydroshikimate dehydratase
1813	 39.18	0	2186229..2186810	-	193	126641928	aroD	A1S_1883	-	3-dehydroquinate dehydratase
1814	 43.20	0	2187125..2187580	-	151	126641929	-	A1S_1884	-	protocatechuate 34-dioxygenase alpha chain (3,4-PCD)
1815	 40.94	0	2187769..2188386	-	205	126641930	-	A1S_1885	-	protocatechuate 34-dioxygenase beta chain (3,4-PCD)
1816	 43.12	0	2188505..2188882	-	125	126641931	-	A1S_1886	-	gamma-carboxymuconolactone decarboxylase (CMD)
1817	 48.19	+2	2188934..2189209	-	91	126641932	-	A1S_1887	-	4-hydroxybenzoate transporter
1818	 43.55	0	2189233..2190201	-	322	126641933	-	A1S_1888	-	putative transport protein
1819	 39.85	0	2190331..2191005	-	224	126641934	-	A1S_1889	-	3-oxoadipate enol-lactonase I
1820	 43.66	+1	2191113..2192390	-	425	126641935	-	A1S_1890	-	3-carboxy-ciscis-muconate cycloisomerase
1821	 47.70	+2	2192471..2193319	-	282	126641936	-	A1S_1891	-	beta-ketoadipyl CoA thiolase
1822	 53.12	+2	2193490..2193681	-	63	126641937	-	A1S_1892	-	Beta-ketoadipyl CoA thiolase
1823	 48.26	+2	2193694..2194269	-	191	126641938	-	A1S_1893	-	3-oxoadipate CoA-transferase subunit B
1824	 49.23	+2	2194366..2194887	-	173	126641939	-	A1S_1894	-	3-oxoacid CoA-transferase subunit A
1825	 36.67	-1	2195387..2195926	-	179	126641940	-	A1S_1895	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
1826	 40.82	0	2196069..2196335	-	88	126641941	-	A1S_1896	-	putative cell division protein (FtsB-like)
1827	 36.82	0	2197161..2197763	+	200	126641942	-	A1S_1897	-	hypothetical protein
1828	 38.17	0	2197860..2199059	-	399	126641943	-	A1S_1898	-	enolase
1829	 39.16	0	2199195..2200052	-	285	162286730	-	A1S_1899	-	2-dehydro-3-deoxyphosphooctonate aldolase
1830	 40.20	0	2200084..2201613	-	509	126641945	-	A1S_1900	-	CTP synthetase
1831	 35.71	-1	2202717..2203514	+	265	126641946	-	A1S_1901	-	hypothetical protein
1832	 38.45	0	2203568..2204407	-	279	126641947	-	A1S_1902	-	hypothetical protein
1833	 39.51	0	2204682..2205377	-	231	126641948	-	A1S_1903	-	hypothetical protein
1834	 34.71	-1	2205437..2205799	-	120	126641949	-	A1S_1904	-	hypothetical protein
1835	 41.31	0	2205915..2207870	-	651	126641950	-	A1S_1905	-	24-dienoyl-CoA reductase
1836	 37.53	0	2208159..2208635	+	158	126641951	-	A1S_1906	-	hypothetical protein
1837	 37.68	0	2208728..2209555	+	275	126641952	-	A1S_1907	-	putative peroxidase
1838	 38.63	0	2209599..2210486	-	295	126641953	-	A1S_1908	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1839	 41.36	0	2211082..2211405	-	107	126641954	-	A1S_1909	-	hypothetical protein
1840	 40.19	0	2211448..2213604	-	718	126641955	-	A1S_1910	-	ATP-binding protease component
1841	 40.58	0	2213734..2214147	-	137	126641956	-	A1S_1911	-	putative protease
1842	 40.98	0	2214157..2214810	-	217	126641957	-	A1S_1912	-	hypothetical protein
1843	 38.02	0	2214991..2215908	-	305	126641958	argC	A1S_1913	-	N-acetyl-gamma-glutamyl-phosphate reductase
1844	 38.78	0	2217745..2218332	-	195	126641959	-	A1S_1914	-	hypothetical protein
1845	 39.22	0	2218425..2218883	-	152	126641960	-	A1S_1915	-	ribose 5-phosphate isomerase
1846	 42.13	0	2219495..2220745	+	416	126641961	-	A1S_1916	-	threonine dehydratase
1847	 35.02	-1	2220890..2221540	+	216	126641962	-	A1S_1917	-	putative potassium uptake protein
1848	 37.75	0	2221697..2222896	+	399	126641963	-	A1S_1918	-	putative potassium uptake protein (TrkH)
1849	 40.95	0	2222938..2224014	-	358	126641964	-	A1S_1919	-	putative phospholipase A1 precursor (PldA)
1850	 39.63	0	2224110..2226857	-	915	126641965	-	A1S_1920	-	putative metalloprotease
1851	 38.32	0	2227301..2229226	-	641	126641966	-	A1S_1921	-	ferrichrome-iron receptor
1852	 40.42	0	2229740..2230642	+	300	126641967	-	A1S_1922	-	putative sugar kinase protein
1853	 37.57	0	2231083..2231601	+	172	126641968	-	A1S_1923	-	hypothetical protein
1854	 41.67	0	2232289..2233764	+	491	126641969	-	A1S_1924	-	cytochrome d terminal oxidase polypeptide subunit I
1855	 43.15	0	2233848..2234906	+	352	126641970	-	A1S_1925	-	cytochrome d terminal oxidase polypeptide subunit II
1856	 44.21	+1	2235037..2235321	+	94	126641971	-	A1S_1926	-	hypothetical protein
1857	 32.69	-2	2235334..2235801	-	155	126641972	-	A1S_1927	-	putative acetyltransferase
1858	 39.65	0	2235931..2236500	-	189	126641973	-	A1S_1928	-	putative signal peptide
1859	 37.35	0	2236828..2237424	-	198	126641974	-	A1S_1929	-	putative oxidoreductase
1860	 38.96	0	2237612..2238517	-	301	126641975	-	A1S_1930	-	cell division protein
1861	 36.84	0	2238826..2239053	-	75	126641976	-	A1S_1931	-	hypothetical protein
1862	 34.44	-1	2239253..2239612	-	119	126641977	-	A1S_1932	-	hypothetical protein
1863	 41.03	0	2239828..2240061	+	77	126641978	-	A1S_1933	-	hypothetical protein
1864	 36.53	-1	2240397..2240771	+	124	126641979	-	A1S_1934	-	hypothetical protein
1865	 36.58	-1	2241005..2241343	+	112	126641980	-	A1S_1935	-	hypothetical protein
1866	 40.44	0	2241392..2242306	-	304	126641981	-	A1S_1936	-	acetylornithine aminotransferase
1867	 42.11	0	2242828..2243169	+	113	126641982	-	A1S_1937	-	putative glutaredoxin-related protein
40.16	MEAN

3.49	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.