IslandPathversion 1.0

IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.16 STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1710	 42.54	0	2075173..2076540	-	455	126641825	-	A1S_1780	-	putative nicotinate phosphoribosyltransferase
1711	 41.37	0	2076678..2077424	-	248	126641826	-	A1S_1781	-	putative ribose-phosphate pyrophosphokinase
1712	 41.86	0	2077744..2078400	-	218	126641827	-	A1S_1782	-	hypothetical protein
1713	 40.86	0	2078784..2079434	+	216	126641828	-	A1S_1783	-	AraC family transcriptional regulator
1714	 38.67	0	2079429..2079878	-	149	126641829	-	A1S_1784	-	GNAT family acetyltransferase
1715	 39.71	0	2079917..2080543	-	208	126641830	-	A1S_1785	-	putative iron transport protein
1716	 41.73	0	2080678..2081523	-	281	126641831	-	A1S_1786	-	putative iron transport protein
1717	 40.61	0	2081691..2082515	-	274	126641832	-	A1S_1787	-	putative iron transport protein
1718	 38.57	0	2083140..2083922	-	260	126641833	-	A1S_1788	-	Zn-dependent alcohol dehydrogenase
1719	 38.69	0	2084616..2085362	+	248	126641834	-	A1S_1789	-	putative transcriptional regulator
1720	 42.11	0	2085458..2086141	-	227	126641835	-	A1S_1790	-	6-phosphogluconate dehydrogenase NAD-binding
1721	 40.65	0	2086330..2087613	-	427	126641836	-	A1S_1791	-	putative tartrate symporter MFS superfamily protein
1722	 40.68	0	2087740..2088420	-	226	126641837	-	A1S_1792	-	nucleoside-diphosphate-sugar epimerase
1723	 41.34	0	2088923..2089771	-	282	126641838	-	A1S_1793	-	LysR family transcriptional regulator
1724	 39.63	0	2089970..2091145	+	391	126641839	-	A1S_1794	-	hypothetical protein
1725	 44.30	+1	2091233..2093020	+	595	162286731	-	A1S_1795	-	dihydroxy-acid dehydratase
1726	 48.80	+2	2093130..2093627	+	165	126641841	-	A1S_1796	-	aldehyde dehydrogenase
1727	 46.09	+1	2093790..2094620	+	276	126641842	-	A1S_1797	-	aldehyde dehydrogenase
1728	 35.44	-1	2094699..2095220	-	173	126641843	-	A1S_1798	-	putative transcription regulator protein
1729	 40.20	0	2095594..2097063	+	489	126641844	-	A1S_1799	-	multidrug efflux MFS transporter putative
1730	 40.79	0	2097144..2098028	+	294	126641845	-	A1S_1800	-	RND efflux transporter
1731	 39.51	0	2097985..2098146	+	53	126641846	-	A1S_1801	-	RND efflux transporter
1732	 38.85	0	2098246..2098662	-	138	126641847	-	A1S_1802	-	hypothetical protein
1733	 43.94	+1	2098714..2099109	-	131	126641848	-	A1S_1803	-	hypothetical protein
1734	 41.21	0	2099356..2100180	+	274	126641849	-	A1S_1804	-	LysR family transcriptional regulator
1735	 40.70	0	2100282..2101517	-	411	126641850	-	A1S_1805	-	major facilitator transporter
1736	 38.91	0	2101922..2102800	+	292	126641851	-	A1S_1806	-	senescence marker protein-30 (SMP-30)
1737	 36.68	0	2102894..2103490	-	198	126641852	-	A1S_1807	-	regulatory protein GntR HTH
1738	 37.93	0	2103851..2105026	+	391	126641853	-	A1S_1808	-	hypothetical protein
1739	 39.02	0	2105214..2105846	+	210	126641854	-	A1S_1809	-	putative hydrolase transmembrane protein
1740	 38.90	0	2105994..2107196	+	400	126641855	-	A1S_1810	-	putative tartrate transporter
1741	 31.49	-2	2107311..2107907	-	198	126641856	-	A1S_1811	-	hypothetical protein
1742	 34.47	-1	2109066..2109680	-	204	126641857	-	A1S_1812	-	hypothetical protein
1743	 35.78	-1	2113586..2113993	-	135	126641858	-	A1S_1813	-	putative transcriptional regulator
1744	 38.64	0	2115102..2115779	-	225	126641859	-	A1S_1814	-	putative transporter
1745	 38.34	0	2115905..2117302	-	465	126641860	-	A1S_1815	-	acyl-CoA synthetase
1746	 40.45	0	2117670..2118821	-	383	126641861	-	A1S_1816	-	putative long-chain fatty acid transport protein
1747	 43.71	+1	2119212..2120762	-	516	126641862	-	A1S_1817	-	Acyl-CoA dehydrogenase
1748	 41.54	0	2121045..2121434	-	129	126641863	-	A1S_1818	-	MaoC-like dehydratase
1749	 44.36	+1	2121509..2122270	-	253	126641864	-	A1S_1819	-	Short-chain dehydrogenase/reductase SDR
1750	 45.72	+1	2122465..2123118	-	217	126641865	-	A1S_1820	-	Short-chain dehydrogenase/reductase SDR
1751	 41.44	0	2123233..2123997	-	254	126641866	-	A1S_1821	-	short chain dehydrogenase
1752	 34.52	-1	2124438..2125112	+	224	126641867	-	A1S_1822	-	putative transcription regulator protein
1753	 40.39	0	2125266..2125775	+	169	126641868	-	A1S_1823	-	TetR family transcriptional regulator
1754	 43.43	0	2125953..2126933	+	326	126641869	-	A1S_1824	-	hypothetical protein
1755	 45.31	+1	2127255..2127680	+	141	126641870	-	A1S_1825	-	hypothetical protein
1756	 43.26	0	2127947..2129044	+	365	126641871	-	A1S_1826	-	NADH dehydrogenase FAD-containing subunit
1757	 40.00	0	2129136..2129705	-	189	126641872	-	A1S_1827	-	hypothetical protein
1758	 34.38	-1	2130113..2130400	+	95	126641873	-	A1S_1828	-	MerR family transcriptional regulator
1759	 41.22	0	2130611..2131282	+	223	126641874	-	A1S_1829	-	hypothetical protein
1760	 40.39	0	2131350..2131859	-	169	126641875	-	A1S_1830	-	putative dihydrofolate reductase
1761	 43.77	+1	2132135..2132977	-	280	126641876	-	A1S_1831	-	hypothetical protein
1762	 42.14	0	2133218..2134387	-	389	126641877	-	A1S_1832	-	oxidoreductase FMN-binding
1763	 40.94	0	2134618..2135235	-	205	126641878	-	A1S_1833	-	hypothetical protein
1764	 38.52	0	2135865..2136674	+	269	126641879	-	A1S_1834	-	hypothetical protein
1765	 47.05	+1	2136726..2138234	-	502	126641880	-	A1S_1835	-	aldehyde dehydrogenase
1766	 41.03	0	2138312..2139247	-	311	126641881	-	A1S_1836	-	hypothetical protein
1767	 39.95	0	2139321..2140136	-	271	126641882	-	A1S_1837	-	major facilitator superfamily permease
1768	 41.00	0	2140247..2140507	-	86	126641883	-	A1S_1838	-	major facilitator superfamily permease
1769	 44.82	+1	2140857..2142527	+	556	126641884	-	A1S_1839	-	dihydroxy-acid dehydratase
1770	 38.40	0	2142677..2143327	+	216	126641885	-	A1S_1840	-	GntR family transcriptional regulator
1771	 37.23	0	2143395..2144087	-	230	126641886	-	A1S_1841	-	hypothetical protein
1772	 35.85	-1	2144271..2144945	-	224	126641887	-	A1S_1842	-	transcription regulator LysR
1773	 43.37	0	2145358..2146254	+	298	126641888	-	A1S_1843	-	muconate cycloisomerase I
1774	 39.93	0	2146435..2146707	+	90	126641889	-	A1S_1844	-	CatC3
1775	 44.04	+1	2146959..2147789	+	276	126641890	-	A1S_1845	-	CatA3
1776	 48.47	+2	2148074..2148595	+	173	126641891	-	A1S_1846	-	3-oxoacid CoA-transferase subunit A
1777	 48.26	+2	2148692..2149267	+	191	126641892	-	A1S_1847	-	3-oxoadipate CoA-transferase subunit B
1778	 53.12	+2	2149280..2149471	+	63	126641893	-	A1S_1848	-	Beta-ketoadipyl CoA thiolase
1779	 46.62	+1	2149642..2150499	+	285	126641894	-	A1S_1849	-	beta-ketoadipyl CoA thiolase
1780	 40.89	0	2150615..2151289	+	224	126641895	-	A1S_1850	-	esterase
1781	 39.47	0	2151782..2154013	+	743	126641896	-	A1S_1851	-	penicillin G amidase
1782	 40.69	0	2154085..2155470	-	461	126641897	-	A1S_1852	-	phenylacetaldehyde dehydrogenase
1783	 36.90	0	2155606..2156643	-	345	126641898	-	A1S_1853	-	hypothetical protein
1784	 39.32	0	2156968..2159157	-	729	126641899	-	A1S_1854	-	Cu2+-containing amine oxidase
1785	 35.13	-1	2159492..2160160	-	222	126641900	-	A1S_1855	-	putative transcriptional regulator
1786	 40.55	0	2160605..2161408	-	267	126641901	-	A1S_1856	-	p-hydroxyphenylacetate hydroxylase C1:reductase component
1787	 41.98	0	2161607..2162497	-	296	126641902	-	A1S_1857	-	vanillate O-demethylase oxidoreductase
1788	 44.27	+1	2162595..2163179	-	194	126641903	-	A1S_1858	-	Short-chain dehydrogenase/reductase SDR
1789	 40.70	0	2163543..2163827	-	94	126641904	-	A1S_1859	-	aromatic-ring-hydroxylating dioxygenase beta subunit
1790	 43.39	0	2163838..2164662	-	274	126641905	-	A1S_1860	-	ring hydroxylating dioxygenase Rieske (2Fe-2S) protein
1791	 41.29	0	2164713..2165114	-	133	126641906	-	A1S_1861	-	benzoate dioxygenase large subunit
1792	 37.67	0	2165144..2165581	-	145	126641907	-	A1S_1862	-	hypothetical protein
1793	 43.83	+1	2165682..2166005	-	107	126641908	-	A1S_1863	-	hypothetical protein
1794	 43.69	+1	2166070..2166957	-	295	126641909	-	A1S_1864	-	Acyl-CoA dehydrogenase-like protein
1795	 40.44	0	2167255..2168169	-	304	126641910	-	A1S_1865	-	Glu-tRNA amidotransferase
1796	 36.32	-1	2168514..2168981	+	155	126641911	-	A1S_1866	-	MarR family multidrug resistance pump transcriptional regulator
1797	 40.64	0	2169460..2170731	+	423	126641912	-	A1S_1867	-	major facilitator transporter
1798	 40.10	0	2170898..2171473	+	191	126641913	-	A1S_1868	-	porin for benzoate transport (BenP)
1799	 38.44	0	2171470..2172096	+	208	126641914	-	A1S_1869	-	putative porin for benzoate transport (BenP)
1800	 40.32	0	2172133..2172876	-	247	126641915	-	A1S_1870	-	short chain dehydrogenase
1801	 40.66	0	2172892..2173437	-	181	126641916	-	A1S_1871	-	putative phosphoglycerate mutase related protein
1802	 40.02	0	2173587..2174483	-	298	126641917	-	A1S_1872	-	putative phosphotransferase
1803	 42.29	0	2174728..2175777	-	349	126641918	-	A1S_1873	-	putative acyl-CoA dehydrogenase
1804	 36.16	-1	2176277..2176984	+	235	126641919	-	A1S_1874	-	LysR family transcriptional regulator
1805	 39.81	0	2177114..2177839	+	241	126641920	-	A1S_1875	-	pca operon regulatory protein
1806	 35.37	-1	2177932..2178570	-	212	126641921	-	A1S_1876	-	putative metallo-beta lactamase
1807	 34.71	-1	2178803..2179165	-	120	126641922	-	A1S_1877	-	hypothetical protein
1808	 40.32	0	2179221..2179535	-	104	126641923	-	A1S_1878	-	hypothetical protein
1809	 35.92	-1	2179770..2180195	-	141	126641924	-	A1S_1879	-	hypothetical protein
40.16	MEAN

3.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.