IslandPathversion 1.0

IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.16 STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1679	 34.03	-1	2034290..2036299	+	669	126641794	-	A1S_1749	-	ABC transporter-like protein
1680	 40.78	0	2036447..2039428	-	993	126641795	-	A1S_1750	-	AdeB
1681	 43.29	0	2039554..2039985	-	143	126641796	-	A1S_1751	-	AdeA membrane fusion protein
1682	 41.27	0	2040251..2040754	-	167	126641797	-	A1S_1752	-	AdeA membrane fusion protein
1683	 37.74	0	2040999..2041634	+	211	126641798	-	A1S_1753	-	AdeR
1684	 38.16	0	2041903..2042751	+	282	126641799	-	A1S_1754	-	AdeS
1685	 38.25	0	2043503..2044417	+	304	126641800	-	A1S_1755	-	AdeT
1686	 39.09	0	2044493..2045551	-	352	126641801	-	A1S_1756	-	AraC family transcriptional regulator
1687	 46.34	+1	2045710..2046624	+	304	126641802	-	A1S_1757	-	Alpha/beta hydrolase
1688	 46.42	+1	2046769..2047509	+	246	126641803	-	A1S_1758	-	Short-chain dehydrogenase/reductase SDR
1689	 39.61	0	2047777..2048397	+	206	126641804	-	A1S_1759	-	Short-chain dehydrogenase/reductase SDR
1690	 40.83	0	2049638..2050384	+	248	126641805	-	A1S_1760	-	hypothetical protein
1691	 37.94	0	2051254..2051709	-	151	126641806	-	A1S_1761	-	acetyltransferase
1692	 37.03	0	2052477..2053559	-	360	126641807	-	A1S_1762	-	hypothetical protein
1693	 39.25	0	2054413..2054784	-	123	126641808	-	A1S_1763	-	putative transcriptional regulator
1694	 37.80	0	2055690..2055935	-	81	126641809	-	A1S_1764	-	putative transcriptional regulator
1695	 38.67	0	2055995..2057062	-	355	126641810	-	A1S_1765	-	hypothetical protein
1696	 39.30	0	2058097..2058582	-	161	126641811	-	A1S_1766	-	hypothetical protein
1697	 43.84	+1	2058753..2059523	-	256	126641812	-	A1S_1767	-	putative acid phosphatase
1698	 40.47	0	2059851..2060915	-	354	126641813	-	A1S_1768	-	hypothetical protein
1699	 43.02	0	2061004..2062242	-	412	126641814	-	A1S_1769	-	RND efflux transporter
1700	 42.13	0	2062329..2063795	-	488	126641815	-	A1S_1770	-	hypothetical protein
1701	 37.38	0	2063912..2064628	-	238	126641816	-	A1S_1771	-	hypothetical protein
1702	 43.18	0	2064896..2066368	-	490	126641817	-	A1S_1772	-	MFS family transporter
1703	 42.86	0	2066459..2067214	-	251	126641818	-	A1S_1773	-	RND family drug transporter
1704	 40.51	0	2068216..2069427	-	403	126641819	-	A1S_1774	-	putative hydrolase
1705	 35.23	-1	2069768..2070031	-	87	126641820	-	A1S_1775	-	transcriptional activator
1706	 37.72	0	2070100..2070441	-	113	126641821	-	A1S_1776	-	transcriptional regulatory protein
1707	 40.71	0	2072878..2073894	-	338	126641822	-	A1S_1777	-	putative methylenetetrahydrofolate reductase
1708	 42.75	0	2074017..2074271	-	84	126641823	-	A1S_1778	-	putative methylenetetrahydrofolate reductase
1709	 42.46	0	2074345..2075034	-	229	126641824	-	A1S_1779	-	putative MutT/nudix family protein
1710	 42.54	0	2075173..2076540	-	455	126641825	-	A1S_1780	-	putative nicotinate phosphoribosyltransferase
1711	 41.37	0	2076678..2077424	-	248	126641826	-	A1S_1781	-	putative ribose-phosphate pyrophosphokinase
1712	 41.86	0	2077744..2078400	-	218	126641827	-	A1S_1782	-	hypothetical protein
1713	 40.86	0	2078784..2079434	+	216	126641828	-	A1S_1783	-	AraC family transcriptional regulator
1714	 38.67	0	2079429..2079878	-	149	126641829	-	A1S_1784	-	GNAT family acetyltransferase
1715	 39.71	0	2079917..2080543	-	208	126641830	-	A1S_1785	-	putative iron transport protein
1716	 41.73	0	2080678..2081523	-	281	126641831	-	A1S_1786	-	putative iron transport protein
1717	 40.61	0	2081691..2082515	-	274	126641832	-	A1S_1787	-	putative iron transport protein
1718	 38.57	0	2083140..2083922	-	260	126641833	-	A1S_1788	-	Zn-dependent alcohol dehydrogenase
1719	 38.69	0	2084616..2085362	+	248	126641834	-	A1S_1789	-	putative transcriptional regulator
1720	 42.11	0	2085458..2086141	-	227	126641835	-	A1S_1790	-	6-phosphogluconate dehydrogenase NAD-binding
1721	 40.65	0	2086330..2087613	-	427	126641836	-	A1S_1791	-	putative tartrate symporter MFS superfamily protein
1722	 40.68	0	2087740..2088420	-	226	126641837	-	A1S_1792	-	nucleoside-diphosphate-sugar epimerase
1723	 41.34	0	2088923..2089771	-	282	126641838	-	A1S_1793	-	LysR family transcriptional regulator
1724	 39.63	0	2089970..2091145	+	391	126641839	-	A1S_1794	-	hypothetical protein
1725	 44.30	+1	2091233..2093020	+	595	162286731	-	A1S_1795	-	dihydroxy-acid dehydratase
1726	 48.80	+2	2093130..2093627	+	165	126641841	-	A1S_1796	-	aldehyde dehydrogenase
1727	 46.09	+1	2093790..2094620	+	276	126641842	-	A1S_1797	-	aldehyde dehydrogenase
1728	 35.44	-1	2094699..2095220	-	173	126641843	-	A1S_1798	-	putative transcription regulator protein
1729	 40.20	0	2095594..2097063	+	489	126641844	-	A1S_1799	-	multidrug efflux MFS transporter putative
1730	 40.79	0	2097144..2098028	+	294	126641845	-	A1S_1800	-	RND efflux transporter
1731	 39.51	0	2097985..2098146	+	53	126641846	-	A1S_1801	-	RND efflux transporter
1732	 38.85	0	2098246..2098662	-	138	126641847	-	A1S_1802	-	hypothetical protein
1733	 43.94	+1	2098714..2099109	-	131	126641848	-	A1S_1803	-	hypothetical protein
1734	 41.21	0	2099356..2100180	+	274	126641849	-	A1S_1804	-	LysR family transcriptional regulator
1735	 40.70	0	2100282..2101517	-	411	126641850	-	A1S_1805	-	major facilitator transporter
1736	 38.91	0	2101922..2102800	+	292	126641851	-	A1S_1806	-	senescence marker protein-30 (SMP-30)
1737	 36.68	0	2102894..2103490	-	198	126641852	-	A1S_1807	-	regulatory protein GntR HTH
1738	 37.93	0	2103851..2105026	+	391	126641853	-	A1S_1808	-	hypothetical protein
1739	 39.02	0	2105214..2105846	+	210	126641854	-	A1S_1809	-	putative hydrolase transmembrane protein
1740	 38.90	0	2105994..2107196	+	400	126641855	-	A1S_1810	-	putative tartrate transporter
1741	 31.49	-2	2107311..2107907	-	198	126641856	-	A1S_1811	-	hypothetical protein
1742	 34.47	-1	2109066..2109680	-	204	126641857	-	A1S_1812	-	hypothetical protein
1743	 35.78	-1	2113586..2113993	-	135	126641858	-	A1S_1813	-	putative transcriptional regulator
1744	 38.64	0	2115102..2115779	-	225	126641859	-	A1S_1814	-	putative transporter
1745	 38.34	0	2115905..2117302	-	465	126641860	-	A1S_1815	-	acyl-CoA synthetase
1746	 40.45	0	2117670..2118821	-	383	126641861	-	A1S_1816	-	putative long-chain fatty acid transport protein
1747	 43.71	+1	2119212..2120762	-	516	126641862	-	A1S_1817	-	Acyl-CoA dehydrogenase
1748	 41.54	0	2121045..2121434	-	129	126641863	-	A1S_1818	-	MaoC-like dehydratase
1749	 44.36	+1	2121509..2122270	-	253	126641864	-	A1S_1819	-	Short-chain dehydrogenase/reductase SDR
1750	 45.72	+1	2122465..2123118	-	217	126641865	-	A1S_1820	-	Short-chain dehydrogenase/reductase SDR
1751	 41.44	0	2123233..2123997	-	254	126641866	-	A1S_1821	-	short chain dehydrogenase
1752	 34.52	-1	2124438..2125112	+	224	126641867	-	A1S_1822	-	putative transcription regulator protein
1753	 40.39	0	2125266..2125775	+	169	126641868	-	A1S_1823	-	TetR family transcriptional regulator
1754	 43.43	0	2125953..2126933	+	326	126641869	-	A1S_1824	-	hypothetical protein
1755	 45.31	+1	2127255..2127680	+	141	126641870	-	A1S_1825	-	hypothetical protein
1756	 43.26	0	2127947..2129044	+	365	126641871	-	A1S_1826	-	NADH dehydrogenase FAD-containing subunit
1757	 40.00	0	2129136..2129705	-	189	126641872	-	A1S_1827	-	hypothetical protein
1758	 34.38	-1	2130113..2130400	+	95	126641873	-	A1S_1828	-	MerR family transcriptional regulator
1759	 41.22	0	2130611..2131282	+	223	126641874	-	A1S_1829	-	hypothetical protein
1760	 40.39	0	2131350..2131859	-	169	126641875	-	A1S_1830	-	putative dihydrofolate reductase
1761	 43.77	+1	2132135..2132977	-	280	126641876	-	A1S_1831	-	hypothetical protein
1762	 42.14	0	2133218..2134387	-	389	126641877	-	A1S_1832	-	oxidoreductase FMN-binding
1763	 40.94	0	2134618..2135235	-	205	126641878	-	A1S_1833	-	hypothetical protein
1764	 38.52	0	2135865..2136674	+	269	126641879	-	A1S_1834	-	hypothetical protein
1765	 47.05	+1	2136726..2138234	-	502	126641880	-	A1S_1835	-	aldehyde dehydrogenase
1766	 41.03	0	2138312..2139247	-	311	126641881	-	A1S_1836	-	hypothetical protein
1767	 39.95	0	2139321..2140136	-	271	126641882	-	A1S_1837	-	major facilitator superfamily permease
1768	 41.00	0	2140247..2140507	-	86	126641883	-	A1S_1838	-	major facilitator superfamily permease
1769	 44.82	+1	2140857..2142527	+	556	126641884	-	A1S_1839	-	dihydroxy-acid dehydratase
1770	 38.40	0	2142677..2143327	+	216	126641885	-	A1S_1840	-	GntR family transcriptional regulator
1771	 37.23	0	2143395..2144087	-	230	126641886	-	A1S_1841	-	hypothetical protein
1772	 35.85	-1	2144271..2144945	-	224	126641887	-	A1S_1842	-	transcription regulator LysR
1773	 43.37	0	2145358..2146254	+	298	126641888	-	A1S_1843	-	muconate cycloisomerase I
1774	 39.93	0	2146435..2146707	+	90	126641889	-	A1S_1844	-	CatC3
1775	 44.04	+1	2146959..2147789	+	276	126641890	-	A1S_1845	-	CatA3
1776	 48.47	+2	2148074..2148595	+	173	126641891	-	A1S_1846	-	3-oxoacid CoA-transferase subunit A
1777	 48.26	+2	2148692..2149267	+	191	126641892	-	A1S_1847	-	3-oxoadipate CoA-transferase subunit B
1778	 53.12	+2	2149280..2149471	+	63	126641893	-	A1S_1848	-	Beta-ketoadipyl CoA thiolase
40.16	MEAN

3.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.