IslandPathversion 1.0

IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.16 STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1647	 42.46	0	1995115..1995651	+	178	126641762	-	A1S_1717	-	GntR family transcriptional regulator
1648	 41.64	0	1995680..1997413	+	577	126641763	-	A1S_1718	-	putative oxidoreductase
1649	 36.99	0	1997434..1997679	+	81	126641764	-	A1S_1719	-	4Fe-4S ferredoxin iron-sulfur binding
1650	 40.59	0	1997972..1999129	+	385	126641765	-	A1S_1720	-	hypothetical protein
1651	 41.30	0	1999341..2000018	+	225	126641766	-	A1S_1721	-	ABC-type nitrate/sulfonate/bicarbonate transport system permease component
1652	 37.76	0	2000272..2000859	+	195	126641767	-	A1S_1722	-	putative ATP-binding component of ABC transporter
1653	 40.36	0	2000958..2001854	+	298	126641768	-	A1S_1723	-	phycobiliprotein putative
1654	 40.58	0	2002159..2003304	-	381	126641769	-	A1S_1724	-	major facilitator superfamily alpha-ketoglutarate permease
1655	 37.42	0	2004120..2006174	+	684	126641770	-	A1S_1725	-	putative ferric siderophore receptor protein
1656	 36.44	-1	2006231..2007646	-	471	162286732	aspA	A1S_1726	-	aspartate ammonia-lyase
1657	 33.33	-1	2009465..2010232	+	255	126641772	-	A1S_1727	-	LysR family transcriptional regulator
1658	 37.18	0	2010536..2011366	+	276	126641773	-	A1S_1728	-	LysR family transcriptional regulator
1659	 41.61	0	2011427..2012392	-	321	126641774	-	A1S_1729	-	putative acetyl-CoA acetyltransferase
1660	 38.06	0	2012665..2013870	-	401	126641775	-	A1S_1730	-	short-chain fatty acid transporter
1661	 40.81	0	2014191..2014832	-	213	126641776	-	A1S_1731	-	acetoacetyl-CoA transferase beta subunit
1662	 38.07	0	2014834..2015319	-	161	126641777	-	A1S_1732	-	acetoacetyl-CoA transferase alpha subunit
1663	 33.64	-1	2015784..2016434	-	216	126641778	-	A1S_1733	-	LysR family transcriptional regulator
1664	 33.63	-1	2017552..2018226	+	224	126641779	-	A1S_1734	-	hypothetical protein
1665	 30.98	-2	2018575..2018829	-	84	126641780	-	A1S_1735	-	hypothetical protein
1666	 41.00	0	2020616..2021959	+	447	126641781	-	A1S_1736	-	hypothetical protein
1667	 40.62	0	2022107..2022778	+	223	126641782	-	A1S_1737	-	3-hydroxybutyrate dehydrogenase
1668	 35.95	-1	2023178..2024095	+	305	126641783	-	A1S_1738	-	putative transcriptional regulator
1669	 38.72	0	2024163..2024738	-	191	126641784	-	A1S_1739	-	major facilitator transporter
1670	 39.43	0	2024923..2025447	-	174	126641785	-	A1S_1740	-	benzoate transport
1671	 43.14	0	2025966..2027087	+	373	126641786	-	A1S_1741	-	putative dienelactone hydrolase
1672	 45.51	+1	2027262..2027885	+	207	126641787	-	A1S_1742	-	oxidoreductase
1673	 44.16	+1	2028013..2029167	+	384	126641788	-	A1S_1743	-	putative oxygenase subunit protein
1674	 43.18	0	2029331..2029726	+	131	126641789	-	A1S_1744	-	putative electron transfer flavoprotein
1675	 40.16	0	2029879..2030727	+	282	126641790	-	A1S_1745	-	putative signal peptide
1676	 37.43	0	2030784..2031662	-	292	126641791	-	A1S_1746	-	putative transcriptional regulator
1677	 39.86	0	2032292..2032567	-	91	126641792	-	A1S_1747	-	anthranilate dioxygenase reductase
1678	 37.04	0	2032830..2033261	+	143	126641793	-	A1S_1748	-	replication protein
1679	 34.03	-1	2034290..2036299	+	669	126641794	-	A1S_1749	-	ABC transporter-like protein
1680	 40.78	0	2036447..2039428	-	993	126641795	-	A1S_1750	-	AdeB
1681	 43.29	0	2039554..2039985	-	143	126641796	-	A1S_1751	-	AdeA membrane fusion protein
1682	 41.27	0	2040251..2040754	-	167	126641797	-	A1S_1752	-	AdeA membrane fusion protein
1683	 37.74	0	2040999..2041634	+	211	126641798	-	A1S_1753	-	AdeR
1684	 38.16	0	2041903..2042751	+	282	126641799	-	A1S_1754	-	AdeS
1685	 38.25	0	2043503..2044417	+	304	126641800	-	A1S_1755	-	AdeT
1686	 39.09	0	2044493..2045551	-	352	126641801	-	A1S_1756	-	AraC family transcriptional regulator
1687	 46.34	+1	2045710..2046624	+	304	126641802	-	A1S_1757	-	Alpha/beta hydrolase
1688	 46.42	+1	2046769..2047509	+	246	126641803	-	A1S_1758	-	Short-chain dehydrogenase/reductase SDR
1689	 39.61	0	2047777..2048397	+	206	126641804	-	A1S_1759	-	Short-chain dehydrogenase/reductase SDR
1690	 40.83	0	2049638..2050384	+	248	126641805	-	A1S_1760	-	hypothetical protein
1691	 37.94	0	2051254..2051709	-	151	126641806	-	A1S_1761	-	acetyltransferase
1692	 37.03	0	2052477..2053559	-	360	126641807	-	A1S_1762	-	hypothetical protein
1693	 39.25	0	2054413..2054784	-	123	126641808	-	A1S_1763	-	putative transcriptional regulator
1694	 37.80	0	2055690..2055935	-	81	126641809	-	A1S_1764	-	putative transcriptional regulator
1695	 38.67	0	2055995..2057062	-	355	126641810	-	A1S_1765	-	hypothetical protein
1696	 39.30	0	2058097..2058582	-	161	126641811	-	A1S_1766	-	hypothetical protein
1697	 43.84	+1	2058753..2059523	-	256	126641812	-	A1S_1767	-	putative acid phosphatase
1698	 40.47	0	2059851..2060915	-	354	126641813	-	A1S_1768	-	hypothetical protein
1699	 43.02	0	2061004..2062242	-	412	126641814	-	A1S_1769	-	RND efflux transporter
1700	 42.13	0	2062329..2063795	-	488	126641815	-	A1S_1770	-	hypothetical protein
1701	 37.38	0	2063912..2064628	-	238	126641816	-	A1S_1771	-	hypothetical protein
1702	 43.18	0	2064896..2066368	-	490	126641817	-	A1S_1772	-	MFS family transporter
1703	 42.86	0	2066459..2067214	-	251	126641818	-	A1S_1773	-	RND family drug transporter
1704	 40.51	0	2068216..2069427	-	403	126641819	-	A1S_1774	-	putative hydrolase
1705	 35.23	-1	2069768..2070031	-	87	126641820	-	A1S_1775	-	transcriptional activator
1706	 37.72	0	2070100..2070441	-	113	126641821	-	A1S_1776	-	transcriptional regulatory protein
1707	 40.71	0	2072878..2073894	-	338	126641822	-	A1S_1777	-	putative methylenetetrahydrofolate reductase
1708	 42.75	0	2074017..2074271	-	84	126641823	-	A1S_1778	-	putative methylenetetrahydrofolate reductase
1709	 42.46	0	2074345..2075034	-	229	126641824	-	A1S_1779	-	putative MutT/nudix family protein
1710	 42.54	0	2075173..2076540	-	455	126641825	-	A1S_1780	-	putative nicotinate phosphoribosyltransferase
1711	 41.37	0	2076678..2077424	-	248	126641826	-	A1S_1781	-	putative ribose-phosphate pyrophosphokinase
1712	 41.86	0	2077744..2078400	-	218	126641827	-	A1S_1782	-	hypothetical protein
1713	 40.86	0	2078784..2079434	+	216	126641828	-	A1S_1783	-	AraC family transcriptional regulator
1714	 38.67	0	2079429..2079878	-	149	126641829	-	A1S_1784	-	GNAT family acetyltransferase
1715	 39.71	0	2079917..2080543	-	208	126641830	-	A1S_1785	-	putative iron transport protein
1716	 41.73	0	2080678..2081523	-	281	126641831	-	A1S_1786	-	putative iron transport protein
1717	 40.61	0	2081691..2082515	-	274	126641832	-	A1S_1787	-	putative iron transport protein
1718	 38.57	0	2083140..2083922	-	260	126641833	-	A1S_1788	-	Zn-dependent alcohol dehydrogenase
1719	 38.69	0	2084616..2085362	+	248	126641834	-	A1S_1789	-	putative transcriptional regulator
1720	 42.11	0	2085458..2086141	-	227	126641835	-	A1S_1790	-	6-phosphogluconate dehydrogenase NAD-binding
1721	 40.65	0	2086330..2087613	-	427	126641836	-	A1S_1791	-	putative tartrate symporter MFS superfamily protein
1722	 40.68	0	2087740..2088420	-	226	126641837	-	A1S_1792	-	nucleoside-diphosphate-sugar epimerase
1723	 41.34	0	2088923..2089771	-	282	126641838	-	A1S_1793	-	LysR family transcriptional regulator
1724	 39.63	0	2089970..2091145	+	391	126641839	-	A1S_1794	-	hypothetical protein
1725	 44.30	+1	2091233..2093020	+	595	162286731	-	A1S_1795	-	dihydroxy-acid dehydratase
1726	 48.80	+2	2093130..2093627	+	165	126641841	-	A1S_1796	-	aldehyde dehydrogenase
1727	 46.09	+1	2093790..2094620	+	276	126641842	-	A1S_1797	-	aldehyde dehydrogenase
1728	 35.44	-1	2094699..2095220	-	173	126641843	-	A1S_1798	-	putative transcription regulator protein
1729	 40.20	0	2095594..2097063	+	489	126641844	-	A1S_1799	-	multidrug efflux MFS transporter putative
1730	 40.79	0	2097144..2098028	+	294	126641845	-	A1S_1800	-	RND efflux transporter
1731	 39.51	0	2097985..2098146	+	53	126641846	-	A1S_1801	-	RND efflux transporter
1732	 38.85	0	2098246..2098662	-	138	126641847	-	A1S_1802	-	hypothetical protein
1733	 43.94	+1	2098714..2099109	-	131	126641848	-	A1S_1803	-	hypothetical protein
1734	 41.21	0	2099356..2100180	+	274	126641849	-	A1S_1804	-	LysR family transcriptional regulator
1735	 40.70	0	2100282..2101517	-	411	126641850	-	A1S_1805	-	major facilitator transporter
1736	 38.91	0	2101922..2102800	+	292	126641851	-	A1S_1806	-	senescence marker protein-30 (SMP-30)
1737	 36.68	0	2102894..2103490	-	198	126641852	-	A1S_1807	-	regulatory protein GntR HTH
1738	 37.93	0	2103851..2105026	+	391	126641853	-	A1S_1808	-	hypothetical protein
1739	 39.02	0	2105214..2105846	+	210	126641854	-	A1S_1809	-	putative hydrolase transmembrane protein
1740	 38.90	0	2105994..2107196	+	400	126641855	-	A1S_1810	-	putative tartrate transporter
1741	 31.49	-2	2107311..2107907	-	198	126641856	-	A1S_1811	-	hypothetical protein
1742	 34.47	-1	2109066..2109680	-	204	126641857	-	A1S_1812	-	hypothetical protein
1743	 35.78	-1	2113586..2113993	-	135	126641858	-	A1S_1813	-	putative transcriptional regulator
1744	 38.64	0	2115102..2115779	-	225	126641859	-	A1S_1814	-	putative transporter
1745	 38.34	0	2115905..2117302	-	465	126641860	-	A1S_1815	-	acyl-CoA synthetase
1746	 40.45	0	2117670..2118821	-	383	126641861	-	A1S_1816	-	putative long-chain fatty acid transport protein
40.16	MEAN

3.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.