IslandPathversion 1.0

IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.16 STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1343	 42.16	0	1654118..1654570	-	150	126641458	-	A1S_1412	-	glutathione S-transferase-like protein
1344	 40.16	0	1654864..1655625	-	253	126641459	-	A1S_1413	-	regulatory protein
1345	 41.22	0	1656457..1657014	+	185	126641460	-	A1S_1414	-	LrgB-like protein
1346	 42.32	0	1657022..1658290	-	422	126641461	-	A1S_1415	-	transcriptional regulator
1347	 43.54	0	1658784..1659263	+	159	126641462	-	A1S_1416	-	negative transcriptional regulator
1348	 41.61	0	1659453..1659899	+	148	126641463	-	A1S_1417	-	putative amino-acid acetyltransferase
1349	 41.51	0	1659908..1661020	-	370	126641464	-	A1S_1418	-	MFS permease
1350	 41.07	0	1661105..1661686	-	193	126641465	-	A1S_1419	-	anti-sigm factor ChrR
1351	 38.18	0	1662055..1662879	+	274	126641466	-	A1S_1420	-	regulatory protein LysR:LysR, substrate-binding
1352	 44.35	+1	1662989..1664668	+	559	126641467	-	A1S_1421	-	malonate decarboxylase alpha subunit
1353	 45.01	+1	1664722..1665552	+	276	126641468	-	A1S_1422	-	triphosphoribosyl-dephospho-CoA synthase
1354	 46.01	+1	1665579..1665854	+	91	126641469	-	A1S_1423	-	malonate decarboxylase subunit delta
1355	 42.80	0	1665970..1666698	+	242	126641470	-	A1S_1424	-	malonate decarboxylase subunit beta
1356	 43.61	0	1666803..1667522	+	239	126641471	-	A1S_1425	-	malonate decarboxylase gamma subunit
1357	 44.33	+1	1667558..1668121	+	187	126641472	-	A1S_1426	-	phosphoribosyl-dephospho-CoA transferase
1358	 43.46	0	1668263..1669072	+	269	126641473	-	A1S_1427	-	malonate decarboxylase epsilon subunit
1359	 43.33	0	1669238..1669537	+	99	126641474	-	A1S_1428	-	malonate transporter
1360	 45.60	+1	1669602..1670294	+	230	126641475	-	A1S_1429	-	malonate transporter
1361	 33.33	-1	1670344..1670766	-	140	126641476	-	A1S_1430	-	LysR family malonate utilization transcriptional regulator
1362	 39.55	0	1670805..1671206	-	133	126641477	-	A1S_1431	-	LysR family malonate utilization transcriptional regulator
1363	 39.03	0	1671358..1672656	-	432	126641478	-	A1S_1432	-	hypothetical protein
1364	 42.25	0	1673023..1673964	-	313	126641479	-	A1S_1433	-	ubiquinol oxidase subunit II
1365	 44.18	+1	1674020..1675264	-	414	126641480	-	A1S_1434	-	ubiquinol oxidase subunit I
1366	 32.57	-2	1676212..1676994	+	260	126641481	-	A1S_1435	-	hypothetical protein
1367	 43.59	0	1677169..1677636	+	155	126641482	-	A1S_1436	-	putative acyl-CoA dehydrogenase
1368	 41.03	0	1677765..1678349	+	194	126641483	-	A1S_1437	-	putative acyl-CoA dehydrogenase
1369	 44.50	+1	1678799..1679353	+	184	126641484	-	A1S_1438	-	putative coenzyme F420-dependent N5N10-methylene tetrahydromethanopterin reductase
1370	 40.59	0	1679478..1679918	+	146	126641485	-	A1S_1439	-	putative coenzyme F420-dependent N5N10-methylene tetrahydromethanopterin reductase
1371	 42.72	0	1680324..1681580	+	418	126641486	-	A1S_1440	-	MFS family transporter
1372	 40.34	0	1681642..1682826	-	394	126641487	-	A1S_1441	-	putative signal peptide
1373	 40.02	0	1683413..1684309	+	298	126641488	-	A1S_1442	-	taurine ABC transporter periplasmic taurine-binding protein
1374	 40.69	0	1684421..1685113	+	230	126641489	-	A1S_1443	-	taurine ATP-binding transport system component
1375	 43.25	0	1685365..1685979	+	204	126641490	-	A1S_1444	-	ABC taurine transporter permease subunit
1376	 43.13	0	1686021..1686857	+	278	126641491	tauD	A1S_1445	-	taurine dioxygenase
1377	 43.29	0	1686939..1687571	-	210	126641492	-	A1S_1446	-	hydantoin racemase
1378	 40.71	0	1687670..1689025	-	451	126641493	-	A1S_1447	-	putative permease
1379	 36.46	-1	1689709..1690284	+	191	126641494	-	A1S_1448	-	putative transcriptional regulator
1380	 31.68	-2	1690323..1691048	-	241	126641495	-	A1S_1449	-	transcriptional regulatory protein
1381	 42.76	0	1691481..1692095	+	204	126641496	-	A1S_1450	-	hypothetical protein
1382	 44.08	+1	1692552..1694300	+	582	126641497	-	A1S_1451	-	hypothetical protein
1383	 38.44	0	1694588..1694959	-	123	126641498	-	A1S_1452	-	arsenate reductase
1384	 34.85	-1	1695101..1695430	+	109	126641499	-	A1S_1453	-	arsenite inducible repressor
1385	 37.60	0	1695703..1696569	+	288	126641500	-	A1S_1454	-	transmembrane arsenate pump protein
1386	 40.22	0	1696661..1697488	-	275	126641501	-	A1S_1455	-	putative transcriptional regulator
1387	 41.34	0	1697764..1698225	+	153	126641502	-	A1S_1456	-	putative chromate transport protein
1388	 41.61	0	1698312..1698746	+	144	126641503	-	A1S_1457	-	putative chromate transport protein
1389	 44.97	+1	1699166..1699732	+	188	126641504	-	A1S_1458	-	alkyl hydroperoxide reductase subunit F
1390	 47.83	+2	1699740..1700015	+	91	126641505	-	A1S_1459	-	alkyl hydroperoxide reductase subunit F
1391	 42.48	0	1700125..1700463	+	112	126641506	-	A1S_1460	-	alkyl hydroperoxide reductase subunit F
1392	 37.76	0	1700517..1702346	-	609	126641507	-	A1S_1461	-	hypothetical protein
1393	 38.13	0	1702640..1703368	-	242	126641508	-	A1S_1462	-	hypothetical protein
1394	 42.33	0	1703685..1704251	-	188	126641509	-	A1S_1463	-	serine acetyltransferase
1395	 42.31	0	1704493..1705227	-	244	126641510	-	A1S_1464	-	putative tRNA/rRNA methyltransferase
1396	 41.96	0	1705347..1708814	-	1155	126641511	-	A1S_1465	-	DNA polymerase III alpha chain
1397	 38.68	0	1709125..1709985	-	286	126641512	-	A1S_1466	-	glutaminase-asparaginase
1398	 39.49	0	1710877..1711932	-	351	126641513	-	A1S_1467	-	putative glutamate symport transmembrane protein
1399	 41.49	0	1712652..1713902	-	416	126641514	-	A1S_1468	-	aminotransferase AlaT
1400	 42.66	0	1714314..1714742	+	142	126641515	-	A1S_1469	-	peptide methionine sulfoxide reductase
1401	 35.60	-1	1714739..1715224	+	161	126641516	-	A1S_1470	-	glutathione peroxidase
1402	 35.33	-1	1715469..1716068	+	199	126641517	-	A1S_1471	-	AraC family transcriptional regulator
1403	 30.92	-2	1716310..1716765	+	151	126641518	-	A1S_1472	-	putative amino acid efflux protein putative threonine efflux protein
1404	 40.07	0	1716826..1717983	-	385	126641519	-	A1S_1473	-	hypothetical protein
1405	 40.98	0	1718021..1720438	-	805	126641520	-	A1S_1474	-	uridylyltransferase
1406	 42.12	0	1720712..1721770	-	352	126641521	purT	A1S_1475	-	phosphoribosylglycinamide formyltransferase 2
1407	 35.69	-1	1722032..1722328	-	98	126641522	-	A1S_1476	-	hypothetical protein
1408	 38.72	0	1722893..1723468	-	191	126641523	-	A1S_1477	-	putative amino acid transporter
1409	 38.00	0	1723735..1724205	+	156	126641524	-	A1S_1478	-	hypothetical protein
1410	 33.33	-1	1724786..1725241	-	151	126641525	-	A1S_1479	-	hypothetical protein
1411	 37.22	0	1725748..1726107	+	119	126641526	-	A1S_1480	-	hypothetical protein
1412	 39.96	0	1726153..1727043	-	296	126641527	-	A1S_1481	-	putative GTP-binding protein
1413	 42.95	0	1727338..1727784	-	148	126641528	-	A1S_1482	-	D-and L-methionine transport protein x
1414	 39.32	0	1727979..1728797	-	272	126641529	-	A1S_1483	-	D-and L-methionine transport protein
1415	 38.66	0	1729061..1729942	-	293	126641530	-	A1S_1484	-	D-methionine transport protein
1416	 38.47	0	1729908..1730627	-	239	126641531	-	A1S_1485	-	D-methionine transport protein
1417	 41.22	0	1730753..1731880	-	375	126641532	-	A1S_1486	-	putative monooxygenase (DszA-like)
1418	 42.08	0	1732165..1733388	-	407	126641533	-	A1S_1487	-	putative Acyl-CoA dehydrogenase
1419	 39.81	0	1733401..1734636	-	411	126641534	-	A1S_1488	-	putative Acyl-CoA dehydrogenase
1420	 38.82	0	1735036..1735746	+	236	126641535	-	A1S_1489	-	putative glutathione S-transferase
1421	 36.67	-1	1736517..1737176	+	219	126641536	-	A1S_1490	-	glutamate/aspartate transport protein
1422	 40.52	0	1737418..1738113	+	231	126641537	-	A1S_1491	-	glutamate/aspartate transport protein
1423	 39.93	0	1738203..1738793	+	196	126641538	-	A1S_1492	-	glutamate/aspartate transport protein
1424	 39.96	0	1739053..1739550	+	165	126641539	-	A1S_1493	-	glutamate/aspartate transport protein
1425	 40.73	0	1739601..1740857	-	418	126641540	-	A1S_1494	-	putative protein (DcaP-like)
1426	 32.42	-2	1741404..1741733	+	109	126641541	-	A1S_1495	-	putative transcriptional regulator
1427	 38.95	0	1741764..1742333	-	189	126641542	-	A1S_1496	-	hypothetical protein
1428	 35.54	-1	1742676..1743083	-	135	126641543	-	A1S_1497	-	putative acyltransferase
1429	 27.15	-2	1743405..1743857	-	150	126641544	-	A1S_1498	-	TetR family transcriptional regulator
1430	 38.94	0	1744499..1745104	+	201	126641545	-	A1S_1499	-	hypothetical protein
1431	 27.95	-2	1746192..1746767	+	191	126641546	-	A1S_1501	-	Phage integrase
1432	 35.35	-1	1747347..1748141	-	264	126641547	-	A1S_1502	-	hypothetical protein
1433	 39.06	0	1748390..1748773	+	127	126641548	-	A1S_1503	-	transmembrane pair
1434	 36.79	0	1748831..1750246	-	471	126641549	-	A1S_1504	-	purine-cytosine permease
1435	 37.40	0	1751076..1751960	-	294	126641550	-	A1S_1505	-	hypothetical protein
1436	 40.22	0	1752313..1752951	+	212	126641551	-	A1S_1506	-	LysR family transcriptional regulator
1437	 38.83	0	1753747..1754655	-	302	126641552	-	A1S_1507	-	fimbrial protein
1438	 36.13	-1	1754763..1757192	-	809	126641553	-	A1S_1508	-	fimbrial biogenesis outer membrane usher protein
1439	 31.67	-2	1757352..1758011	-	219	126641554	-	A1S_1509	-	pili assembly chaperone
1440	 40.11	0	1758163..1758531	-	122	126641555	-	A1S_1510	-	fimbrial protein
1441	 38.60	0	1759816..1760745	-	309	126641556	-	A1S_1511	-	biotin synthase
1442	 40.15	0	1760905..1761858	-	317	126641557	-	A1S_1512	-	putative ferredoxin
40.16	MEAN

3.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.