IslandPathversion 1.0

IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.16 STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1073	 40.19	0	1330442..1330966	+	174	126641188	-	A1S_1140	-	RNAse HII
1074	 36.99	0	1331036..1331254	-	72	126641189	-	A1S_1141	-	carbon storage regulator
1075	 41.56	0	1331537..1332691	-	384	126641190	-	A1S_1142	-	aspartate kinase
1076	 39.23	0	1336526..1336966	-	146	126641191	-	A1S_1143	-	hypothetical protein
1077	 37.91	0	1337194..1337871	-	225	126641192	-	A1S_1144	-	S24 family peptidase
1078	 40.96	0	1337988..1338236	+	82	126641193	-	A1S_1145	-	putative Cro protein
1079	 50.13	+2	1339221..1339976	-	251	126641195	-	A1S_1147	-	site-specific DNA methylase-like protein
1080	 49.51	+2	1339423..1340040	+	205	126641194	-	A1S_1146	-	site-specific DNA-methyltransferase
1081	 41.41	0	1342844..1343140	+	98	126641196	-	A1S_1148	-	hypothetical protein
1082	 36.94	0	1344620..1344979	+	119	126641197	-	A1S_1149	-	hypothetical protein
1083	 44.44	+1	1345113..1345589	+	158	126641198	-	A1S_1150	-	hypothetical protein
1084	 43.19	0	1345648..1346124	+	158	126641199	-	A1S_1151	-	hypothetical protein
1085	 43.79	+1	1346204..1347628	+	474	126641200	-	A1S_1152	-	putative helicase
1086	 42.08	0	1347829..1348971	+	380	126641201	-	A1S_1153	-	putative phage-related protein
1087	 44.16	+1	1349138..1349728	+	196	126641202	-	A1S_1154	-	putative bacteriophage protein
1088	 44.97	+1	1350882..1352084	+	400	126641203	-	A1S_1155	-	putative phage-related protein
1089	 48.48	+2	1352173..1352568	+	131	126641204	-	A1S_1156	-	hypothetical protein
1090	 43.03	0	1352703..1353548	+	281	126641205	-	A1S_1157	-	hypothetical protein
1091	 42.42	0	1353650..1353946	+	98	126641206	-	A1S_1158	-	putative signal peptide
1092	 42.56	0	1354004..1354339	+	111	126641207	-	A1S_1159	-	hypothetical protein
1093	 46.03	+1	1354590..1355030	+	146	126641208	-	A1S_1160	-	hypothetical protein
1094	 42.06	0	1355146..1355466	+	106	126641209	-	A1S_1161	-	hypothetical protein
1095	 43.39	0	1355631..1356296	+	221	126641210	-	A1S_1162	-	hypothetical protein
1096	 44.62	+1	1356686..1356880	+	64	126641211	-	A1S_1163	-	hypothetical protein
1097	 41.09	0	1357609..1359477	+	622	126641212	-	A1S_1164	-	putative phage tail tape meausure protein
1098	 45.28	+1	1359590..1360585	+	331	126641213	-	A1S_1165	-	putative phage tail tape meausure protein
1099	 41.08	0	1360656..1361249	+	197	126641214	-	A1S_1166	-	hypothetical protein
1100	 41.70	0	1361375..1362103	+	242	126641215	-	A1S_1167	-	hypothetical protein
1101	 39.88	0	1362328..1363962	+	544	126641216	-	A1S_1168	-	hypothetical protein
1102	 41.49	0	1365218..1365499	+	93	126641217	-	A1S_1169	-	hypothetical protein
1103	 43.35	0	1365673..1367649	+	658	126641218	-	A1S_1170	-	hypothetical protein
1104	 42.40	0	1368280..1368687	+	135	126641219	-	A1S_1171	-	hypothetical protein
1105	 41.57	0	1369012..1369545	-	177	126641220	-	A1S_1172	-	putative transposase
1106	 38.20	0	1370417..1371547	-	376	126641221	-	A1S_1173	-	RumB
1107	 35.96	-1	1371719..1372213	-	164	126641222	-	A1S_1174	-	DNA polymerase V component
1108	 36.27	-1	1374218..1375342	-	374	126641223	-	A1S_1175	-	phage integrase
1109	 41.41	0	1375710..1378223	-	837	126641224	-	A1S_1176	-	alanyl-tRNA synthetase
1110	 38.69	0	1378709..1379641	+	310	126641225	-	A1S_1177	-	glyceraldehyde 3-phosphate dehydrogenase
1111	 40.35	0	1380171..1381082	+	303	126641226	-	A1S_1178	-	ATP phosphoribosyltransferase regulatory subunit
1112	 43.04	0	1381396..1382466	+	356	126641227	-	A1S_1179	-	adenylosuccinate synthetase
1113	 42.72	0	1383089..1383802	+	237	126641228	-	A1S_1180	-	putative Zn-dependent protease with chaperone function
1114	 41.36	0	1383862..1384758	-	298	126641229	-	A1S_1181	-	oxidoreductase
1115	 43.69	+1	1385134..1385529	-	131	126641230	-	A1S_1182	-	cyclic AMP receptor protein
1116	 41.31	0	1386293..1386643	+	116	126641231	-	A1S_1183	-	hypothetical protein
1117	 38.80	0	1386797..1387162	+	121	126641232	-	A1S_1184	-	putative acyltransferase (PhnO)
1118	 39.97	0	1387159..1387911	-	250	126641233	-	A1S_1185	-	M24/M37 family peptidase
1119	 42.47	0	1388329..1390845	+	838	126641234	-	A1S_1186	-	ATP-dependent protease Hsp 100
1120	 35.58	-1	1390902..1391390	-	162	126641235	-	A1S_1187	-	CinA-like protein
1121	 39.26	0	1392102..1392641	-	179	126641236	-	A1S_1188	-	putative N-6 adenine-specific DNA methylase
1122	 41.56	0	1392692..1393906	-	404	126641237	-	A1S_1189	-	putative N-6 adenine-specific DNA methylase
1123	 41.72	0	1395025..1396026	+	333	162286738	pyrB	A1S_1190	-	aspartate carbamoyltransferase catalytic subunit
1124	 43.90	+1	1396186..1396914	+	242	126641239	-	A1S_1191	-	aspartate carbamoyltransferase non-catalytic chain
1125	 40.56	0	1397025..1397273	+	82	126641240	-	A1S_1192	-	aspartate carbamoyltransferase non-catalytic chain
1126	 42.71	0	1397709..1398902	+	397	126641241	-	A1S_1193	-	OmpA/MotB
1127	 38.48	0	1399244..1399768	+	174	126641242	-	A1S_1194	-	hypothetical protein
1128	 38.32	0	1399922..1400242	-	106	126641243	-	A1S_1195	-	putative glutathione S-transferase
1129	 44.55	+1	1400576..1401217	-	213	126641244	-	A1S_1196	-	tRNA(guanine-7)methyltransferase
1130	 39.78	0	1401525..1402919	+	464	126641245	-	A1S_1197	-	putative extracellular nuclease
1131	 40.02	0	1402981..1403877	+	298	126641246	-	A1S_1198	-	putative extracellular nuclease
1132	 33.50	-1	1404085..1404696	+	203	126641247	-	A1S_1199	-	putative glutathionine S-transferase
1133	 44.28	+1	1405278..1406099	-	273	126641248	-	A1S_1200	-	alkyl hydroperoxide reductase subunit F
1134	 41.44	0	1406312..1406866	-	184	126641249	-	A1S_1201	-	alkyl hydroperoxide reductase subunit F
1135	 35.62	-1	1407107..1407325	+	72	126641250	-	A1S_1202	-	hypothetical protein
1136	 40.94	0	1407503..1407949	+	148	126641251	-	A1S_1203	-	o-methyl transferase
1137	 39.35	0	1408014..1408229	-	71	126641252	-	A1S_1204	-	hypothetical protein
1138	 42.63	0	1408422..1408916	-	164	126641253	-	A1S_1205	-	alkyl hydroperoxide reductase C22 subunit
1139	 42.30	0	1409578..1412397	+	939	126641254	-	A1S_1206	-	ATP-dependent helicase
1140	 38.32	0	1412553..1413194	+	213	126641255	-	A1S_1207	-	ATP-dependent helicase
1141	 40.69	0	1413376..1414395	+	339	126641256	-	A1S_1208	-	3-oxoacyl-(acyl carrier protein) synthase III
1142	 39.19	0	1414496..1415536	-	346	126641257	-	A1S_1209	-	putative benzoate transport porin (BenP)
1143	 44.72	+1	1415803..1417014	-	403	126641258	-	A1S_1210	-	major facilitator transporter
1144	 41.79	0	1417630..1418682	-	350	126641259	-	A1S_1211	-	benzoate transporter
1145	 46.06	+1	1418881..1419666	-	261	162286737	benD	A1S_1212	-	1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase
1146	 42.38	0	1419688..1420527	-	279	126641261	-	A1S_1213	-	benzoate 12-dioxygenase electron transfer component
1147	 40.00	0	1420775..1421149	-	124	126641262	-	A1S_1214	-	benzoate 12-dioxygenase beta subunit
1148	 43.53	0	1421272..1422654	-	460	126641263	-	A1S_1215	-	benzoate 12 dioxygenase alpha subunit
1149	 42.08	0	1423177..1423896	+	239	126641264	-	A1S_1216	-	LysR regulator
1150	 44.64	+1	1424370..1426784	+	804	126641265	-	A1S_1217	-	heavy metal translocating P-type ATPase
1151	 37.54	0	1426905..1427261	+	118	126641266	-	A1S_1218	-	heavy metal regulator HmrR
1152	 42.77	0	1427359..1427697	+	112	126641267	-	A1S_1219	-	glutathione-dependent formaldehyde-activating GFA
1153	 34.54	-1	1430076..1430489	+	137	126641268	-	A1S_1220	-	putative threonine efflux protein
1154	 33.85	-1	1430989..1431183	-	64	126641269	-	A1S_1221	-	hypothetical protein
1155	 38.42	0	1431176..1432354	-	392	126641270	xseA	A1S_1222	-	exodeoxyribonuclease VII large subunit
1156	 36.75	0	1432945..1433178	+	77	126641271	-	A1S_1224	-	transposase
1157	 38.05	0	1433330..1433923	-	197	126641272	-	A1S_1225	-	peptidase S24 S26A and S26B
1158	 38.28	0	1434992..1435537	+	181	126641273	-	A1S_1226	-	hypothetical protein
1159	 29.14	-2	1435604..1436080	-	158	126641274	-	A1S_1227	-	amino acid transporter LysE
1160	 34.26	-1	1436739..1436954	+	71	126641275	-	A1S_1228	-	cold shock protein
1161	 37.70	0	1437928..1438476	+	182	126641276	-	A1S_1229	-	pyrroline-5-carboxylate reductase
1162	 37.91	0	1440551..1441381	+	276	126641277	-	A1S_1230	-	phage putative head morphogenesis protein
1163	 48.34	+2	1441533..1442558	-	341	126641278	-	A1S_1231	-	hypothetical protein
1164	 42.77	0	1442967..1443305	+	112	126641279	-	A1S_1232	-	EsvB
1165	 30.04	-2	1444540..1445055	+	171	126641280	-	A1S_1233	-	hypothetical protein
1166	 41.44	0	1446570..1447913	-	447	126641281	-	A1S_1235	-	cysteinyl-tRNA synthetase
1167	 42.18	0	1448358..1449182	+	274	126641282	-	A1S_1236	-	D-arabinose 5-phosphate isomerase
1168	 45.20	+1	1449330..1449725	+	131	126641283	-	A1S_1237	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
1169	 37.90	0	1449874..1450311	+	145	126641284	-	A1S_1238	-	hypothetical protein
1170	 41.43	0	1450424..1450843	+	139	126641285	-	A1S_1239	-	putative transport protein
1171	 40.55	0	1450939..1451589	+	216	126641286	-	A1S_1240	-	putative transport protein
1172	 42.17	0	1451997..1453331	+	444	126641287	-	A1S_1241	-	RND efflux transporter
40.16	MEAN

3.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.