IslandPathversion 1.0

IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.16 STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1029	 40.58	0	1281289..1282185	+	298	126641144	-	A1S_1096	-	hypothetical protein
1030	 37.17	0	1282201..1283034	-	277	126641145	-	A1S_1097	-	hypothetical protein
1031	 43.67	+1	1283223..1284518	-	431	126641146	-	A1S_1098	-	D-galactarate dehydrogenase
1032	 41.47	0	1284841..1286118	-	425	126641147	-	A1S_1099	-	major facilitator superfamily D-glucarate/D-galactarate permease
1033	 42.32	0	1286548..1287816	+	422	126641148	-	A1S_1100	-	D-glucarate dehydratase
1034	 40.93	0	1287943..1288890	+	315	126641149	-	A1S_1101	-	5-dehydro-4-deoxyglucarate dehydratase
1035	 45.51	+1	1289161..1290507	+	448	126641150	-	A1S_1102	-	2-ketoglutarate semialdehyde dehydrogenase
1036	 36.50	-1	1290928..1291464	+	178	126641151	-	A1S_1103	-	GntR family transcriptional regulator
1037	 45.47	+1	1291529..1293127	-	532	126641152	-	A1S_1104	-	chlorogenate esterase
1038	 42.90	0	1293314..1293658	-	114	126641153	-	A1S_1105	-	hypothetical protein
1039	 43.20	0	1293744..1294280	-	178	126641154	-	A1S_1106	-	hypothetical protein
1040	 42.42	0	1294337..1295557	-	406	126641155	-	A1S_1107	-	porin
1041	 43.48	0	1295671..1296606	-	311	126641156	-	A1S_1108	-	acyl coenzyme A dehydrogenase
1042	 42.66	0	1296885..1298492	-	535	126641157	-	A1S_1109	-	feruloyl-CoA synthase
1043	 44.58	+1	1298853..1300079	-	408	126641158	-	A1S_1110	-	hydroxybenzaldehyde dehydrogenase
1044	 43.45	0	1300342..1301181	-	279	126641159	-	A1S_1111	-	p-hydroxycinnamoyl CoA hydratase/lyase
1045	 44.56	+1	1301521..1302660	+	379	126641160	-	A1S_1112	-	putative 3-hydroxyphenylpropionic transporter MhpT
1046	 33.83	-1	1302788..1303189	+	133	126641161	-	A1S_1113	-	putative transcriptional regulator
1047	 44.86	+1	1303347..1303988	+	213	126641162	-	A1S_1114	-	ferulate or vanillate catabolism transcriptional regulator
1048	 41.64	0	1304032..1304862	-	276	126641163	-	A1S_1115	-	vanillate O-demethylase oxidoreductase
1049	 44.38	+1	1304989..1306065	-	358	126641164	-	A1S_1116	-	vanillate O-demethylase oxygenase subunit
1050	 41.97	0	1306596..1307903	+	435	126641165	-	A1S_1117	-	MFS superfamily vanillate transporter
1051	 39.21	0	1308178..1309215	+	345	126641166	-	A1S_1118	-	putative porin for vanillate trafficking (VanP)
1052	 43.10	0	1309275..1310840	-	521	126641167	-	A1S_1119	-	choline dehydrogenase-like flavoprotein
1053	 41.43	0	1310974..1311294	-	106	126641168	-	A1S_1120	-	lipase/esterase
1054	 45.35	+1	1311318..1311758	-	146	126641169	-	A1S_1121	-	lipase/esterase
1055	 43.99	+1	1311939..1312604	-	221	126641170	-	A1S_1122	-	putative short-chain dehydrogenase
1056	 41.63	0	1312838..1314139	-	433	126641171	-	A1S_1123	-	putative flavin-binding monooxygenase
1057	 42.69	0	1314525..1315475	+	316	126641172	-	A1S_1124	-	AraC family transcriptional regulator
1058	 38.28	0	1315487..1316254	-	255	126641173	-	A1S_1125	-	putative transferase
1059	 38.81	0	1316474..1317769	-	431	126641174	-	A1S_1126	-	putative flavin-binding monooxygenase
1060	 42.60	0	1318022..1318690	-	222	126641175	-	A1S_1127	-	short chain dehydrogenase/reductase family oxidoreductase
1061	 38.62	0	1318918..1319730	-	270	126641176	-	A1S_1128	-	hypothetical protein
1062	 29.89	-2	1320592..1321026	+	144	126641177	-	A1S_1129	-	repressor protein
1063	 40.37	0	1321091..1321630	-	179	126641178	-	A1S_1130	-	Pirin-like:cupin 2 barrel
1064	 39.49	0	1322540..1323286	+	248	126641179	-	A1S_1131	-	hypothetical protein
1065	 42.97	0	1323529..1324182	+	217	126641180	-	A1S_1132	-	short chain dehydrogenase/reductase family oxidoreductase
1066	 39.43	0	1324206..1324697	+	163	126641181	-	A1S_1133	-	putative flavin-binding monooxygenase
1067	 38.70	0	1324805..1325755	+	316	126641182	-	A1S_1134	-	putative flavin-binding monooxygenase
1068	 45.21	+1	1326784..1327044	+	86	126641183	-	A1S_1135	-	putative transporter
1069	 41.82	0	1327347..1327994	+	215	126641184	-	A1S_1136	-	putative transporter
1070	 38.84	0	1328106..1329104	+	332	162286739	-	A1S_1137	-	adenosine deaminase
1071	 38.92	0	1329148..1329648	-	166	126641186	-	A1S_1138	-	putative cytochrome
1072	 40.97	0	1329942..1330334	+	130	126641187	-	A1S_1139	-	putative signal peptide
1073	 40.19	0	1330442..1330966	+	174	126641188	-	A1S_1140	-	RNAse HII
1074	 36.99	0	1331036..1331254	-	72	126641189	-	A1S_1141	-	carbon storage regulator
1075	 41.56	0	1331537..1332691	-	384	126641190	-	A1S_1142	-	aspartate kinase
1076	 39.23	0	1336526..1336966	-	146	126641191	-	A1S_1143	-	hypothetical protein
1077	 37.91	0	1337194..1337871	-	225	126641192	-	A1S_1144	-	S24 family peptidase
1078	 40.96	0	1337988..1338236	+	82	126641193	-	A1S_1145	-	putative Cro protein
1079	 50.13	+2	1339221..1339976	-	251	126641195	-	A1S_1147	-	site-specific DNA methylase-like protein
1080	 49.51	+2	1339423..1340040	+	205	126641194	-	A1S_1146	-	site-specific DNA-methyltransferase
1081	 41.41	0	1342844..1343140	+	98	126641196	-	A1S_1148	-	hypothetical protein
1082	 36.94	0	1344620..1344979	+	119	126641197	-	A1S_1149	-	hypothetical protein
1083	 44.44	+1	1345113..1345589	+	158	126641198	-	A1S_1150	-	hypothetical protein
1084	 43.19	0	1345648..1346124	+	158	126641199	-	A1S_1151	-	hypothetical protein
1085	 43.79	+1	1346204..1347628	+	474	126641200	-	A1S_1152	-	putative helicase
1086	 42.08	0	1347829..1348971	+	380	126641201	-	A1S_1153	-	putative phage-related protein
1087	 44.16	+1	1349138..1349728	+	196	126641202	-	A1S_1154	-	putative bacteriophage protein
1088	 44.97	+1	1350882..1352084	+	400	126641203	-	A1S_1155	-	putative phage-related protein
1089	 48.48	+2	1352173..1352568	+	131	126641204	-	A1S_1156	-	hypothetical protein
1090	 43.03	0	1352703..1353548	+	281	126641205	-	A1S_1157	-	hypothetical protein
1091	 42.42	0	1353650..1353946	+	98	126641206	-	A1S_1158	-	putative signal peptide
1092	 42.56	0	1354004..1354339	+	111	126641207	-	A1S_1159	-	hypothetical protein
1093	 46.03	+1	1354590..1355030	+	146	126641208	-	A1S_1160	-	hypothetical protein
1094	 42.06	0	1355146..1355466	+	106	126641209	-	A1S_1161	-	hypothetical protein
1095	 43.39	0	1355631..1356296	+	221	126641210	-	A1S_1162	-	hypothetical protein
1096	 44.62	+1	1356686..1356880	+	64	126641211	-	A1S_1163	-	hypothetical protein
1097	 41.09	0	1357609..1359477	+	622	126641212	-	A1S_1164	-	putative phage tail tape meausure protein
1098	 45.28	+1	1359590..1360585	+	331	126641213	-	A1S_1165	-	putative phage tail tape meausure protein
1099	 41.08	0	1360656..1361249	+	197	126641214	-	A1S_1166	-	hypothetical protein
1100	 41.70	0	1361375..1362103	+	242	126641215	-	A1S_1167	-	hypothetical protein
1101	 39.88	0	1362328..1363962	+	544	126641216	-	A1S_1168	-	hypothetical protein
1102	 41.49	0	1365218..1365499	+	93	126641217	-	A1S_1169	-	hypothetical protein
1103	 43.35	0	1365673..1367649	+	658	126641218	-	A1S_1170	-	hypothetical protein
1104	 42.40	0	1368280..1368687	+	135	126641219	-	A1S_1171	-	hypothetical protein
1105	 41.57	0	1369012..1369545	-	177	126641220	-	A1S_1172	-	putative transposase
1106	 38.20	0	1370417..1371547	-	376	126641221	-	A1S_1173	-	RumB
1107	 35.96	-1	1371719..1372213	-	164	126641222	-	A1S_1174	-	DNA polymerase V component
1108	 36.27	-1	1374218..1375342	-	374	126641223	-	A1S_1175	-	phage integrase
1109	 41.41	0	1375710..1378223	-	837	126641224	-	A1S_1176	-	alanyl-tRNA synthetase
1110	 38.69	0	1378709..1379641	+	310	126641225	-	A1S_1177	-	glyceraldehyde 3-phosphate dehydrogenase
1111	 40.35	0	1380171..1381082	+	303	126641226	-	A1S_1178	-	ATP phosphoribosyltransferase regulatory subunit
1112	 43.04	0	1381396..1382466	+	356	126641227	-	A1S_1179	-	adenylosuccinate synthetase
1113	 42.72	0	1383089..1383802	+	237	126641228	-	A1S_1180	-	putative Zn-dependent protease with chaperone function
1114	 41.36	0	1383862..1384758	-	298	126641229	-	A1S_1181	-	oxidoreductase
1115	 43.69	+1	1385134..1385529	-	131	126641230	-	A1S_1182	-	cyclic AMP receptor protein
1116	 41.31	0	1386293..1386643	+	116	126641231	-	A1S_1183	-	hypothetical protein
1117	 38.80	0	1386797..1387162	+	121	126641232	-	A1S_1184	-	putative acyltransferase (PhnO)
1118	 39.97	0	1387159..1387911	-	250	126641233	-	A1S_1185	-	M24/M37 family peptidase
1119	 42.47	0	1388329..1390845	+	838	126641234	-	A1S_1186	-	ATP-dependent protease Hsp 100
1120	 35.58	-1	1390902..1391390	-	162	126641235	-	A1S_1187	-	CinA-like protein
1121	 39.26	0	1392102..1392641	-	179	126641236	-	A1S_1188	-	putative N-6 adenine-specific DNA methylase
1122	 41.56	0	1392692..1393906	-	404	126641237	-	A1S_1189	-	putative N-6 adenine-specific DNA methylase
1123	 41.72	0	1395025..1396026	+	333	162286738	pyrB	A1S_1190	-	aspartate carbamoyltransferase catalytic subunit
1124	 43.90	+1	1396186..1396914	+	242	126641239	-	A1S_1191	-	aspartate carbamoyltransferase non-catalytic chain
1125	 40.56	0	1397025..1397273	+	82	126641240	-	A1S_1192	-	aspartate carbamoyltransferase non-catalytic chain
1126	 42.71	0	1397709..1398902	+	397	126641241	-	A1S_1193	-	OmpA/MotB
1127	 38.48	0	1399244..1399768	+	174	126641242	-	A1S_1194	-	hypothetical protein
1128	 38.32	0	1399922..1400242	-	106	126641243	-	A1S_1195	-	putative glutathione S-transferase
40.16	MEAN

3.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.