IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.16   STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
979	 38.52	0	1207072..1207206	-	44	126641094	-	A1S_1044	-	Co/Zn/Cd efflux system
980	 42.25	0	1207322..1207747	+	141	126641095	-	A1S_1045	-	Co/Zn/Cd efflux system
981	 39.37	0	1207805..1208218	-	137	126641096	-	A1S_1046	-	lysine exporter protein LysE/YggA
982	 39.51	0	1208515..1209405	+	296	162286740	-	A1S_1047	-	chromosome replication initiation inhibitor protein
983	 38.50	0	1209889..1210488	-	199	126641098	-	A1S_1048	-	putative methyltransferase
984	 38.06	0	1210919..1211320	+	133	126641099	-	A1S_1049	-	hypothetical protein
985	 40.93	0	1211635..1212108	+	157	126641100	-	A1S_1050	-	putative signal peptide
986	 35.94	-1	1212247..1212975	+	242	126641101	-	A1S_1051	-	esterase
987	 40.10	0	1212998..1213603	-	201	126641102	-	A1S_1052	-	putative NADH pyrophosphatase
988	 36.59	-1	1213741..1215153	-	470	126641103	-	A1S_1053	-	hypothetical protein
989	 40.07	0	1215518..1216897	-	459	126641104	-	A1S_1054	-	hypothetical protein
990	 42.40	0	1217346..1220345	+	999	126641105	-	A1S_1055	-	hypothetical protein
991	 39.05	0	1220484..1222196	+	570	126641106	-	A1S_1056	-	putative oligopeptide transport protein
992	 37.61	0	1222391..1223278	+	295	126641107	-	A1S_1057	-	putative oligopeptide transport protein
993	 41.99	0	1223365..1224288	+	307	126641108	-	A1S_1058	-	putative oligopeptide transport protein
994	 35.32	-1	1224308..1224709	+	133	126641109	-	A1S_1059	-	putative oligopeptide transport protein
995	 39.60	0	1224897..1225391	+	164	126641110	-	A1S_1060	-	putative oligopeptide transport protein
996	 38.21	0	1225489..1225857	+	122	126641111	-	A1S_1061	-	putative oligopeptide transport protein
997	 42.18	0	1226112..1227287	+	391	126641112	-	A1S_1062	-	putative FMN oxidoreductase
998	 38.81	0	1227346..1229316	-	656	126641113	-	A1S_1063	-	TonB-dependent siderophore receptor
999	 42.20	0	1229738..1230256	-	172	126641114	-	A1S_1065	-	ribonuclease T
1000	 39.74	0	1230385..1231305	-	306	126641115	-	A1S_1066	-	dihydroorotase
1001	 37.85	0	1231659..1232831	+	390	126641116	-	A1S_1067	-	GGDEF
1002	 42.06	0	1232890..1233336	-	148	126641117	-	A1S_1068	-	argininosuccinate synthetase
1003	 41.31	0	1233575..1234138	-	187	126641118	-	A1S_1069	-	argininosuccinate synthetase
1004	 44.39	+1	1235088..1237049	+	653	126641119	-	A1S_1070	-	24-dienoyl-CoA reductase
1005	 41.20	0	1239650..1240297	+	215	126641120	-	A1S_1072	-	hypothetical protein
1006	 34.95	-1	1241147..1250797	+	3216	126641121	-	A1S_1073	-	hemolysin-type calcium-binding region
1007	 40.13	0	1252212..1252520	-	102	126641122	-	A1S_1074	-	hypothetical protein
1008	 35.63	-1	1252573..1253529	-	318	126641123	-	A1S_1075	-	D-amino-acid dehydrogenase
1009	 34.36	-1	1253895..1254671	-	258	126641124	-	A1S_1076	-	LysR family transcriptional regulator
1010	 39.35	0	1255120..1256316	+	398	126641125	-	A1S_1077	-	hypothetical protein
1011	 27.05	-2	1256498..1257070	-	190	126641126	-	A1S_1078	-	hypothetical protein
1012	 37.16	0	1257925..1259520	+	531	126641127	-	A1S_1079	-	dichlorophenol hydroxylase
1013	 38.74	0	1260195..1260860	+	221	126641128	-	A1S_1080	-	putative lipoprotein
1014	 35.33	-1	1262185..1262736	+	183	126641129	-	A1S_1081	-	putative transcriptional regulator
1015	 41.94	0	1263572..1263931	-	119	126641130	-	A1S_1082	-	hypothetical protein
1016	 38.58	0	1264315..1265610	-	431	126641131	-	A1S_1083	-	aromatic amino acid APC transporter
1017	 41.63	0	1265818..1267227	-	469	126641132	-	A1S_1084	-	glycine/D-amino acid oxidases (deaminating)
1018	 41.33	0	1267283..1268545	-	420	126641133	-	A1S_1085	-	amino acid transporters
1019	 37.71	0	1268809..1269516	-	235	126641134	-	A1S_1086	-	hypothetical protein
1020	 39.24	0	1269582..1270157	-	191	126641135	-	A1S_1087	-	GntR family transcriptional regulator
1021	 41.83	0	1270361..1270960	-	199	126641136	-	A1S_1088	-	hypothetical protein
1022	 43.12	0	1271160..1272518	-	452	126641137	-	A1S_1089	-	hypothetical protein
1023	 37.35	0	1272908..1273330	-	140	126641138	-	A1S_1090	-	AsnC family transcriptional regulator
1024	 43.25	0	1273508..1273981	+	157	126641139	-	A1S_1091	-	succinylornithine transaminase (carbon starvation protein C)
1025	 40.08	0	1274184..1274702	+	172	126641140	-	A1S_1092	-	succinylornithine transaminase (carbon starvation protein C)
1026	 39.24	0	1274795..1275793	+	332	126641141	-	A1S_1093	-	arginine/ornithine N-succinyltransferase beta subunit
1027	 37.56	0	1276307..1277656	+	449	126641142	-	A1S_1094	-	D-serine/D-alanine/glycine transporter
1028	 42.11	0	1279525..1280937	-	470	126641143	-	A1S_1095	-	aldehyde dehydrogenase
1029	 40.58	0	1281289..1282185	+	298	126641144	-	A1S_1096	-	hypothetical protein
1030	 37.17	0	1282201..1283034	-	277	126641145	-	A1S_1097	-	hypothetical protein
1031	 43.67	+1	1283223..1284518	-	431	126641146	-	A1S_1098	-	D-galactarate dehydrogenase
1032	 41.47	0	1284841..1286118	-	425	126641147	-	A1S_1099	-	major facilitator superfamily D-glucarate/D-galactarate permease
1033	 42.32	0	1286548..1287816	+	422	126641148	-	A1S_1100	-	D-glucarate dehydratase
1034	 40.93	0	1287943..1288890	+	315	126641149	-	A1S_1101	-	5-dehydro-4-deoxyglucarate dehydratase
1035	 45.51	+1	1289161..1290507	+	448	126641150	-	A1S_1102	-	2-ketoglutarate semialdehyde dehydrogenase
1036	 36.50	-1	1290928..1291464	+	178	126641151	-	A1S_1103	-	GntR family transcriptional regulator
1037	 45.47	+1	1291529..1293127	-	532	126641152	-	A1S_1104	-	chlorogenate esterase
1038	 42.90	0	1293314..1293658	-	114	126641153	-	A1S_1105	-	hypothetical protein
1039	 43.20	0	1293744..1294280	-	178	126641154	-	A1S_1106	-	hypothetical protein
1040	 42.42	0	1294337..1295557	-	406	126641155	-	A1S_1107	-	porin
1041	 43.48	0	1295671..1296606	-	311	126641156	-	A1S_1108	-	acyl coenzyme A dehydrogenase
1042	 42.66	0	1296885..1298492	-	535	126641157	-	A1S_1109	-	feruloyl-CoA synthase
1043	 44.58	+1	1298853..1300079	-	408	126641158	-	A1S_1110	-	hydroxybenzaldehyde dehydrogenase
1044	 43.45	0	1300342..1301181	-	279	126641159	-	A1S_1111	-	p-hydroxycinnamoyl CoA hydratase/lyase
1045	 44.56	+1	1301521..1302660	+	379	126641160	-	A1S_1112	-	putative 3-hydroxyphenylpropionic transporter MhpT
1046	 33.83	-1	1302788..1303189	+	133	126641161	-	A1S_1113	-	putative transcriptional regulator
1047	 44.86	+1	1303347..1303988	+	213	126641162	-	A1S_1114	-	ferulate or vanillate catabolism transcriptional regulator
1048	 41.64	0	1304032..1304862	-	276	126641163	-	A1S_1115	-	vanillate O-demethylase oxidoreductase
1049	 44.38	+1	1304989..1306065	-	358	126641164	-	A1S_1116	-	vanillate O-demethylase oxygenase subunit
1050	 41.97	0	1306596..1307903	+	435	126641165	-	A1S_1117	-	MFS superfamily vanillate transporter
1051	 39.21	0	1308178..1309215	+	345	126641166	-	A1S_1118	-	putative porin for vanillate trafficking (VanP)
1052	 43.10	0	1309275..1310840	-	521	126641167	-	A1S_1119	-	choline dehydrogenase-like flavoprotein
1053	 41.43	0	1310974..1311294	-	106	126641168	-	A1S_1120	-	lipase/esterase
1054	 45.35	+1	1311318..1311758	-	146	126641169	-	A1S_1121	-	lipase/esterase
1055	 43.99	+1	1311939..1312604	-	221	126641170	-	A1S_1122	-	putative short-chain dehydrogenase
1056	 41.63	0	1312838..1314139	-	433	126641171	-	A1S_1123	-	putative flavin-binding monooxygenase
1057	 42.69	0	1314525..1315475	+	316	126641172	-	A1S_1124	-	AraC family transcriptional regulator
1058	 38.28	0	1315487..1316254	-	255	126641173	-	A1S_1125	-	putative transferase
1059	 38.81	0	1316474..1317769	-	431	126641174	-	A1S_1126	-	putative flavin-binding monooxygenase
1060	 42.60	0	1318022..1318690	-	222	126641175	-	A1S_1127	-	short chain dehydrogenase/reductase family oxidoreductase
1061	 38.62	0	1318918..1319730	-	270	126641176	-	A1S_1128	-	hypothetical protein
1062	 29.89	-2	1320592..1321026	+	144	126641177	-	A1S_1129	-	repressor protein
1063	 40.37	0	1321091..1321630	-	179	126641178	-	A1S_1130	-	Pirin-like:cupin 2 barrel
1064	 39.49	0	1322540..1323286	+	248	126641179	-	A1S_1131	-	hypothetical protein
1065	 42.97	0	1323529..1324182	+	217	126641180	-	A1S_1132	-	short chain dehydrogenase/reductase family oxidoreductase
1066	 39.43	0	1324206..1324697	+	163	126641181	-	A1S_1133	-	putative flavin-binding monooxygenase
1067	 38.70	0	1324805..1325755	+	316	126641182	-	A1S_1134	-	putative flavin-binding monooxygenase
1068	 45.21	+1	1326784..1327044	+	86	126641183	-	A1S_1135	-	putative transporter
1069	 41.82	0	1327347..1327994	+	215	126641184	-	A1S_1136	-	putative transporter
1070	 38.84	0	1328106..1329104	+	332	162286739	-	A1S_1137	-	adenosine deaminase
1071	 38.92	0	1329148..1329648	-	166	126641186	-	A1S_1138	-	putative cytochrome
1072	 40.97	0	1329942..1330334	+	130	126641187	-	A1S_1139	-	putative signal peptide
1073	 40.19	0	1330442..1330966	+	174	126641188	-	A1S_1140	-	RNAse HII
1074	 36.99	0	1331036..1331254	-	72	126641189	-	A1S_1141	-	carbon storage regulator
1075	 41.56	0	1331537..1332691	-	384	126641190	-	A1S_1142	-	aspartate kinase
1076	 39.23	0	1336526..1336966	-	146	126641191	-	A1S_1143	-	hypothetical protein
1077	 37.91	0	1337194..1337871	-	225	126641192	-	A1S_1144	-	S24 family peptidase
1078	 40.96	0	1337988..1338236	+	82	126641193	-	A1S_1145	-	putative Cro protein
40.16	MEAN

3.49	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.