IslandPath Analysis: Acidobacteria bacterium Ellin345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 58.57   STD DEV: 2.67
Acidobacteria bacterium Ellin345, complete genome - 1..5650368
4777 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
828	 56.66	0	1027916..1028854	+	312	94967859	-	Acid345_0828	-	sulfate adenylyltransferase subunit 2
829	 57.11	0	1028854..1030485	+	543	94967860	-	Acid345_0829	-	sulfate adenylyltransferase subunit 1
830	 58.01	0	1030478..1031182	+	234	94967861	-	Acid345_0830	-	phosphoadenylylsulfate reductase (thioredoxin)
831	 56.48	0	1031237..1032994	+	585	94967862	-	Acid345_0831	-	hypothetical protein
832	 49.62	-2	1033041..1033304	-	87	94967863	-	Acid345_0832	-	hypothetical protein
833	 55.04	-1	1033911..1035656	+	581	94967864	-	Acid345_0833	-	hypothetical protein
834	 56.13	0	1035676..1036605	+	309	94967865	-	Acid345_0834	-	polysaccharide export protein
835	 54.79	-1	1036662..1038893	+	743	94967866	-	Acid345_0835	-	protein-tyrosine kinase
836	 55.96	0	1038928..1039926	+	332	94967867	-	Acid345_0836	-	hypothetical protein
837	 57.63	0	1039966..1041348	+	460	94967868	-	Acid345_0837	-	polysaccharide biosynthesis protein
838	 57.92	0	1041562..1042647	+	361	94967869	-	Acid345_0838	-	serine phosphatase
839	 61.33	+1	1042776..1043468	+	230	94967870	-	Acid345_0839	-	glyoxalase/bleomycin resistance protein/dioxygenase
840	 59.35	0	1043528..1044907	+	459	94967871	-	Acid345_0840	-	mercuric reductase
841	 61.41	+1	1044930..1045424	-	164	94967872	-	Acid345_0841	-	endoribonuclease L-PSP
842	 59.13	0	1045700..1046362	+	220	94967873	-	Acid345_0842	-	hypothetical protein
843	 58.82	0	1046364..1048505	+	713	94967874	-	Acid345_0843	-	PAS/PAC sensor signal transduction histidine kinase
844	 53.44	-1	1048538..1048930	+	130	94967875	-	Acid345_0844	-	response regulator receiver protein
845	 61.59	+1	1049003..1049554	+	183	94967876	-	Acid345_0845	-	response regulator receiver protein
846	 58.38	0	1050006..1050512	-	168	94967877	-	Acid345_0846	-	hypothetical protein
847	 60.94	0	1050524..1054087	-	1187	94967878	-	Acid345_0847	-	hypothetical protein
848	 58.69	0	1054100..1056343	-	747	94967879	-	Acid345_0848	-	hypothetical protein
849	 59.74	0	1056340..1059213	-	957	94967880	-	Acid345_0849	-	hypothetical protein
850	 59.15	0	1059210..1062761	-	1183	94967881	-	Acid345_0850	-	hypothetical protein
851	 55.92	0	1062758..1063120	-	120	94967882	-	Acid345_0851	-	hypothetical protein
852	 62.67	+1	1063137..1063436	-	99	94967883	-	Acid345_0852	-	hypothetical protein
853	 58.33	0	1063466..1064017	-	183	94967884	-	Acid345_0853	-	hypothetical protein
854	 56.52	0	1064014..1065156	-	380	94967885	-	Acid345_0854	-	hypothetical protein
855	 56.99	0	1065146..1065517	-	123	94967886	-	Acid345_0855	-	hypothetical protein
856	 57.01	0	1065514..1066176	-	220	94967887	-	Acid345_0856	-	hypothetical protein
857	 58.15	0	1066208..1069390	-	1060	94967888	-	Acid345_0857	-	hypothetical protein
858	 58.53	0	1069387..1069644	-	85	94967889	-	Acid345_0858	-	hypothetical protein
859	 58.48	0	1069641..1071545	-	634	94967890	-	Acid345_0859	-	AAA ATPase
860	 58.64	0	1071545..1072828	-	427	94967891	-	Acid345_0860	-	hypothetical protein
861	 57.60	0	1073448..1074098	-	216	94967892	-	Acid345_0861	-	hypothetical protein
862	 56.87	0	1074154..1074684	-	176	94967893	-	Acid345_0862	-	hypothetical protein
863	 57.95	0	1074697..1076325	-	542	94967894	-	Acid345_0863	-	phage tail sheath protein
864	 59.58	0	1076382..1076621	-	79	94967895	-	Acid345_0864	-	hypothetical protein
865	 56.32	0	1076820..1080416	-	1198	94967896	-	Acid345_0865	-	hypothetical protein
866	 58.71	0	1080588..1081643	-	351	94967897	-	Acid345_0866	-	sigma-54 dependent trancsriptional regulator
867	 54.21	-1	1085392..1086282	+	296	94967898	-	Acid345_0869	-	formate dehydrogenase beta subunit
868	 56.20	0	1086269..1086937	+	222	94967899	-	Acid345_0870	-	formate dehydrogenase gamma subunit
869	 51.98	-2	1086937..1087692	+	251	94967900	-	Acid345_0871	-	hypothetical protein
870	 54.69	-1	1088077..1089120	-	347	94967901	-	Acid345_0872	-	HPr kinase
871	 55.05	-1	1089183..1090688	+	501	94967902	-	Acid345_0873	-	radical SAM family Fe-S protein
872	 55.38	-1	1090682..1092187	+	501	94967903	-	Acid345_0874	-	radical SAM family Fe-S protein
873	 56.99	0	1092196..1093683	+	495	94967904	-	Acid345_0875	-	radical SAM family Fe-S protein
874	 53.75	-1	1093683..1095068	+	461	94967905	-	Acid345_0876	-	radical SAM family Fe-S protein
875	 54.78	-1	1095065..1095880	+	271	94967906	-	Acid345_0877	-	hypothetical protein
876	 55.65	-1	1095877..1096884	+	335	94967907	-	Acid345_0878	-	hypothetical protein
877	 54.33	-1	1096881..1098347	+	488	94967908	-	Acid345_0879	-	radical SAM family Fe-S protein
878	 54.13	-1	1098353..1100242	+	629	94967909	-	Acid345_0880	-	amidohydrolase
879	 53.88	-1	1100214..1101269	+	351	94967910	-	Acid345_0881	-	radical SAM family Fe-S protein
880	 55.62	-1	1101454..1102512	+	352	94967911	-	Acid345_0882	-	hypothetical protein
881	 54.31	-1	1102509..1102775	+	88	94967912	-	Acid345_0883	-	hypothetical protein
882	 50.41	-2	1102786..1103148	+	120	94967913	-	Acid345_0884	-	cytochrome c oxidase, subunit II
883	 56.26	0	1103151..1103621	+	156	94967914	-	Acid345_0885	-	cytochrome c, class I
884	 55.53	-1	1103623..1104861	+	412	94967915	-	Acid345_0886	-	hypothetical protein
885	 53.37	-1	1104947..1105495	+	182	94967916	-	Acid345_0887	-	transcription antitermination protein nusG
886	 56.15	0	1105492..1108314	+	940	94967917	-	Acid345_0888	-	polysaccharide export protein
887	 54.08	-1	1108325..1109611	+	428	94967918	-	Acid345_0889	-	lipopolysaccharide biosynthesis
888	 56.97	0	1109595..1110935	+	446	94967919	-	Acid345_0890	-	polysaccharide biosynthesis protein
889	 54.23	-1	1110938..1112119	+	393	94967920	-	Acid345_0891	-	O-antigen polymerase
890	 52.14	-2	1112116..1112955	+	279	94967921	-	Acid345_0892	-	glycosyl transferase family protein
891	 54.53	-1	1112965..1114134	+	389	94967922	-	Acid345_0893	-	glycosyl transferase, group 1
892	 53.21	-2	1114131..1114955	+	274	94967923	-	Acid345_0894	-	WecB/TagA/CpsF family glycosyl transferase
893	 54.08	-1	1115049..1116065	+	338	94967924	-	Acid345_0895	-	NAD-dependent epimerase/dehydratase
894	 54.29	-1	1116062..1118032	+	656	94967925	-	Acid345_0896	-	hypothetical protein
895	 55.95	0	1118148..1119500	+	450	94967926	-	Acid345_0897	-	L-serine dehydratase 1
896	 54.12	-1	1119662..1122013	-	783	94967927	-	Acid345_0898	-	Alpha-glucosidase
897	 54.70	-1	1122129..1123214	+	361	94967928	-	Acid345_0899	-	LacI family transcription regulator
898	 54.42	-1	1123798..1127382	+	1194	94967929	-	Acid345_0900	-	hypothetical protein
899	 54.57	-1	1127585..1129642	+	685	94967930	-	Acid345_0901	-	Beta-galactosidase
900	 53.43	-1	1129639..1131156	+	505	94967931	-	Acid345_0902	-	Alpha-L-fucosidase
901	 55.96	0	1131222..1132379	-	385	94967932	-	Acid345_0903	-	xylose isomerase
902	 60.34	0	1132395..1133912	-	505	94967933	-	Acid345_0904	-	xylulokinase
903	 57.44	0	1133922..1135124	-	400	94967934	-	Acid345_0905	-	ABC sugar transporter, inner membrane subunit
904	 55.79	-1	1135121..1136674	-	517	94967935	-	Acid345_0906	-	ABC sugar transporter, ATPase subunit
905	 55.90	-1	1136677..1137735	-	352	94967936	-	Acid345_0907	-	ABC sugar transporter, periplasmic binding protein
906	 55.03	-1	1137962..1139035	+	357	94967937	-	Acid345_0908	-	LacI family transcription regulator
907	 54.71	-1	1139184..1140965	-	593	94967938	-	Acid345_0909	-	ASPIC/UnbV
908	 56.67	0	1141340..1144972	+	1210	94967939	-	Acid345_0910	-	Cna B-type protein
909	 57.11	0	1145129..1146676	+	515	94967940	-	Acid345_0911	-	TPR repeat-containing protein
910	 56.16	0	1146681..1148927	+	748	94967941	-	Acid345_0912	-	TPR repeat-containing protein
911	 55.81	-1	1148962..1150767	+	601	94967942	-	Acid345_0913	-	hypothetical protein
912	 54.49	-1	1150885..1153413	+	842	94967943	-	Acid345_0914	-	MscS mechanosensitive ion channel
913	 53.33	-1	1153410..1154384	-	324	94967944	-	Acid345_0915	-	TPR repeat-containing protein
914	 57.04	0	1154426..1155412	-	328	94967945	-	Acid345_0916	-	glycosidase, PH1107-related
915	 57.26	0	1155559..1157259	+	566	94967946	-	Acid345_0917	-	TPR repeat-containing protein
916	 56.01	0	1157558..1161169	+	1203	94967947	-	Acid345_0918	-	Cna B-type protein
917	 59.13	0	1161273..1163024	+	583	94967948	-	Acid345_0919	-	ASPIC/UnbV
918	 55.87	-1	1163025..1164839	-	604	94967949	-	Acid345_0920	-	ASPIC/UnbV
919	 55.18	-1	1164973..1166679	+	568	94967950	-	Acid345_0921	-	alpha amylase
920	 55.96	0	1166740..1168374	-	544	94967951	-	Acid345_0922	-	Alpha,alpha-trehalase
921	 56.68	0	1168453..1169193	-	246	94967952	-	Acid345_0923	-	high-affinity nickel-transporter
922	 57.02	0	1169231..1169914	-	227	94967953	-	Acid345_0924	-	hydrogenase accessory protein HypB
923	 56.81	0	1169911..1170255	-	114	94967954	-	Acid345_0925	-	hydrogenase expression/synthesis, HypA
924	 59.83	0	1170255..1172477	-	740	94967955	-	Acid345_0926	-	(NiFe) hydrogenase maturation protein HypF
925	 61.15	0	1172838..1173689	+	283	94967956	-	Acid345_0927	-	hypothetical protein
926	 59.08	0	1173690..1178369	+	1559	94967957	-	Acid345_0928	-	alpha-2-macroglobulin-like
927	 57.33	0	1178369..1179139	+	256	94967958	-	Acid345_0929	-	hypothetical protein
58.57	MEAN

2.67	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.