IslandPath Analysis: Acidobacteria bacterium Ellin345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 58.57   STD DEV: 2.67
Acidobacteria bacterium Ellin345, complete genome - 1..5650368
4777 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
801	 54.69	-1	992157..993383	+	408	94967832	-	Acid345_0801	-	proteinase inhibitor I4, serpin
802	 58.90	0	993566..995251	+	561	94967833	-	Acid345_0802	-	radical SAM family Fe-S protein
803	 58.33	0	995421..995864	+	147	94967834	-	Acid345_0803	-	hypothetical protein
804	 63.08	+1	996395..997369	+	324	94967835	-	Acid345_0804	-	A/G-specific DNA glycosylase
805	 58.57	0	997369..997899	+	176	94967836	-	Acid345_0805	-	peroxiredoxin-like
806	 58.75	0	998087..999778	+	563	94967837	-	Acid345_0806	-	peptidase M28
807	 55.62	-1	999828..1000325	-	165	94967838	-	Acid345_0807	-	hypothetical protein
808	 58.86	0	1000440..1001900	+	486	94967839	-	Acid345_0808	-	TPR repeat-containing protein
809	 57.47	0	1002020..1004248	+	742	94967840	-	Acid345_0809	-	hypothetical protein
810	 62.38	+1	1004249..1006093	-	614	94967841	-	Acid345_0810	-	TonB-like protein
811	 54.95	-1	1006181..1006624	+	147	94967842	-	Acid345_0811	-	hypothetical protein
812	 61.31	+1	1006625..1007278	-	217	94967843	-	Acid345_0812	-	cyclase/dehydrase
813	 54.76	-1	1007400..1008155	+	251	94967844	-	Acid345_0813	-	hypothetical protein
814	 57.40	0	1008152..1010482	+	776	94967845	-	Acid345_0814	-	Amylo-alpha-1,6-glucosidase
815	 58.52	0	1010573..1011100	-	175	94967846	-	Acid345_0815	-	rubrerythrin
816	 57.30	0	1011179..1011541	-	120	94967847	-	Acid345_0816	-	hypothetical protein
817	 59.75	0	1011759..1012886	+	375	94967848	-	Acid345_0817	-	radical SAM family Fe-S protein
818	 57.65	0	1012883..1015090	-	735	94967849	-	Acid345_0818	-	hypothetical protein
819	 52.61	-2	1015759..1016007	+	82	94967850	-	Acid345_0819	-	hypothetical protein
820	 54.76	-1	1016227..1018755	+	842	94967851	-	Acid345_0820	-	glycogen/starch/alpha-glucan phosphorylase
821	 53.02	-2	1018800..1020221	-	473	94967852	-	Acid345_0821	-	PAS/PAC sensor signal transduction histidine kinase
822	 55.79	-1	1020564..1021538	+	324	94967853	-	Acid345_0822	-	response regulator receiver protein
823	 58.58	0	1021736..1023244	+	502	94967854	-	Acid345_0823	-	TPR repeat-containing protein
824	 57.27	0	1023346..1025016	+	556	94967855	-	Acid345_0824	-	ASPIC/UnbV
825	 58.63	0	1025268..1026275	+	335	94967856	-	Acid345_0825	-	ABC transporter, substrate-binding protein, aliphatic sulphonates
826	 59.73	0	1026291..1027112	+	273	94967857	-	Acid345_0826	-	ABC transporter, ATPase subunit
827	 57.44	0	1027105..1027863	+	252	94967858	-	Acid345_0827	-	ABC aliphatic sulfonate transporter, inner membrane subunit
828	 56.66	0	1027916..1028854	+	312	94967859	-	Acid345_0828	-	sulfate adenylyltransferase subunit 2
829	 57.11	0	1028854..1030485	+	543	94967860	-	Acid345_0829	-	sulfate adenylyltransferase subunit 1
830	 58.01	0	1030478..1031182	+	234	94967861	-	Acid345_0830	-	phosphoadenylylsulfate reductase (thioredoxin)
831	 56.48	0	1031237..1032994	+	585	94967862	-	Acid345_0831	-	hypothetical protein
832	 49.62	-2	1033041..1033304	-	87	94967863	-	Acid345_0832	-	hypothetical protein
833	 55.04	-1	1033911..1035656	+	581	94967864	-	Acid345_0833	-	hypothetical protein
834	 56.13	0	1035676..1036605	+	309	94967865	-	Acid345_0834	-	polysaccharide export protein
835	 54.79	-1	1036662..1038893	+	743	94967866	-	Acid345_0835	-	protein-tyrosine kinase
836	 55.96	0	1038928..1039926	+	332	94967867	-	Acid345_0836	-	hypothetical protein
837	 57.63	0	1039966..1041348	+	460	94967868	-	Acid345_0837	-	polysaccharide biosynthesis protein
838	 57.92	0	1041562..1042647	+	361	94967869	-	Acid345_0838	-	serine phosphatase
839	 61.33	+1	1042776..1043468	+	230	94967870	-	Acid345_0839	-	glyoxalase/bleomycin resistance protein/dioxygenase
840	 59.35	0	1043528..1044907	+	459	94967871	-	Acid345_0840	-	mercuric reductase
841	 61.41	+1	1044930..1045424	-	164	94967872	-	Acid345_0841	-	endoribonuclease L-PSP
842	 59.13	0	1045700..1046362	+	220	94967873	-	Acid345_0842	-	hypothetical protein
843	 58.82	0	1046364..1048505	+	713	94967874	-	Acid345_0843	-	PAS/PAC sensor signal transduction histidine kinase
844	 53.44	-1	1048538..1048930	+	130	94967875	-	Acid345_0844	-	response regulator receiver protein
845	 61.59	+1	1049003..1049554	+	183	94967876	-	Acid345_0845	-	response regulator receiver protein
846	 58.38	0	1050006..1050512	-	168	94967877	-	Acid345_0846	-	hypothetical protein
847	 60.94	0	1050524..1054087	-	1187	94967878	-	Acid345_0847	-	hypothetical protein
848	 58.69	0	1054100..1056343	-	747	94967879	-	Acid345_0848	-	hypothetical protein
849	 59.74	0	1056340..1059213	-	957	94967880	-	Acid345_0849	-	hypothetical protein
850	 59.15	0	1059210..1062761	-	1183	94967881	-	Acid345_0850	-	hypothetical protein
851	 55.92	0	1062758..1063120	-	120	94967882	-	Acid345_0851	-	hypothetical protein
852	 62.67	+1	1063137..1063436	-	99	94967883	-	Acid345_0852	-	hypothetical protein
853	 58.33	0	1063466..1064017	-	183	94967884	-	Acid345_0853	-	hypothetical protein
854	 56.52	0	1064014..1065156	-	380	94967885	-	Acid345_0854	-	hypothetical protein
855	 56.99	0	1065146..1065517	-	123	94967886	-	Acid345_0855	-	hypothetical protein
856	 57.01	0	1065514..1066176	-	220	94967887	-	Acid345_0856	-	hypothetical protein
857	 58.15	0	1066208..1069390	-	1060	94967888	-	Acid345_0857	-	hypothetical protein
858	 58.53	0	1069387..1069644	-	85	94967889	-	Acid345_0858	-	hypothetical protein
859	 58.48	0	1069641..1071545	-	634	94967890	-	Acid345_0859	-	AAA ATPase
860	 58.64	0	1071545..1072828	-	427	94967891	-	Acid345_0860	-	hypothetical protein
861	 57.60	0	1073448..1074098	-	216	94967892	-	Acid345_0861	-	hypothetical protein
862	 56.87	0	1074154..1074684	-	176	94967893	-	Acid345_0862	-	hypothetical protein
863	 57.95	0	1074697..1076325	-	542	94967894	-	Acid345_0863	-	phage tail sheath protein
864	 59.58	0	1076382..1076621	-	79	94967895	-	Acid345_0864	-	hypothetical protein
865	 56.32	0	1076820..1080416	-	1198	94967896	-	Acid345_0865	-	hypothetical protein
866	 58.71	0	1080588..1081643	-	351	94967897	-	Acid345_0866	-	sigma-54 dependent trancsriptional regulator
867	 54.21	-1	1085392..1086282	+	296	94967898	-	Acid345_0869	-	formate dehydrogenase beta subunit
868	 56.20	0	1086269..1086937	+	222	94967899	-	Acid345_0870	-	formate dehydrogenase gamma subunit
869	 51.98	-2	1086937..1087692	+	251	94967900	-	Acid345_0871	-	hypothetical protein
870	 54.69	-1	1088077..1089120	-	347	94967901	-	Acid345_0872	-	HPr kinase
871	 55.05	-1	1089183..1090688	+	501	94967902	-	Acid345_0873	-	radical SAM family Fe-S protein
872	 55.38	-1	1090682..1092187	+	501	94967903	-	Acid345_0874	-	radical SAM family Fe-S protein
873	 56.99	0	1092196..1093683	+	495	94967904	-	Acid345_0875	-	radical SAM family Fe-S protein
874	 53.75	-1	1093683..1095068	+	461	94967905	-	Acid345_0876	-	radical SAM family Fe-S protein
875	 54.78	-1	1095065..1095880	+	271	94967906	-	Acid345_0877	-	hypothetical protein
876	 55.65	-1	1095877..1096884	+	335	94967907	-	Acid345_0878	-	hypothetical protein
877	 54.33	-1	1096881..1098347	+	488	94967908	-	Acid345_0879	-	radical SAM family Fe-S protein
878	 54.13	-1	1098353..1100242	+	629	94967909	-	Acid345_0880	-	amidohydrolase
879	 53.88	-1	1100214..1101269	+	351	94967910	-	Acid345_0881	-	radical SAM family Fe-S protein
880	 55.62	-1	1101454..1102512	+	352	94967911	-	Acid345_0882	-	hypothetical protein
881	 54.31	-1	1102509..1102775	+	88	94967912	-	Acid345_0883	-	hypothetical protein
882	 50.41	-2	1102786..1103148	+	120	94967913	-	Acid345_0884	-	cytochrome c oxidase, subunit II
883	 56.26	0	1103151..1103621	+	156	94967914	-	Acid345_0885	-	cytochrome c, class I
884	 55.53	-1	1103623..1104861	+	412	94967915	-	Acid345_0886	-	hypothetical protein
885	 53.37	-1	1104947..1105495	+	182	94967916	-	Acid345_0887	-	transcription antitermination protein nusG
886	 56.15	0	1105492..1108314	+	940	94967917	-	Acid345_0888	-	polysaccharide export protein
887	 54.08	-1	1108325..1109611	+	428	94967918	-	Acid345_0889	-	lipopolysaccharide biosynthesis
888	 56.97	0	1109595..1110935	+	446	94967919	-	Acid345_0890	-	polysaccharide biosynthesis protein
889	 54.23	-1	1110938..1112119	+	393	94967920	-	Acid345_0891	-	O-antigen polymerase
890	 52.14	-2	1112116..1112955	+	279	94967921	-	Acid345_0892	-	glycosyl transferase family protein
891	 54.53	-1	1112965..1114134	+	389	94967922	-	Acid345_0893	-	glycosyl transferase, group 1
892	 53.21	-2	1114131..1114955	+	274	94967923	-	Acid345_0894	-	WecB/TagA/CpsF family glycosyl transferase
893	 54.08	-1	1115049..1116065	+	338	94967924	-	Acid345_0895	-	NAD-dependent epimerase/dehydratase
894	 54.29	-1	1116062..1118032	+	656	94967925	-	Acid345_0896	-	hypothetical protein
895	 55.95	0	1118148..1119500	+	450	94967926	-	Acid345_0897	-	L-serine dehydratase 1
896	 54.12	-1	1119662..1122013	-	783	94967927	-	Acid345_0898	-	Alpha-glucosidase
897	 54.70	-1	1122129..1123214	+	361	94967928	-	Acid345_0899	-	LacI family transcription regulator
898	 54.42	-1	1123798..1127382	+	1194	94967929	-	Acid345_0900	-	hypothetical protein
899	 54.57	-1	1127585..1129642	+	685	94967930	-	Acid345_0901	-	Beta-galactosidase
900	 53.43	-1	1129639..1131156	+	505	94967931	-	Acid345_0902	-	Alpha-L-fucosidase
58.57	MEAN

2.67	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.