IslandPath Analysis: Acidobacteria bacterium Ellin345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 58.57   STD DEV: 2.67
Acidobacteria bacterium Ellin345, complete genome - 1..5650368
4777 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
748	 58.08	0	922742..924196	+	484	94967779	-	Acid345_0748	-	ResB-like protein
749	 59.90	0	924220..925638	+	472	94967780	-	Acid345_0749	-	cytochrome c assembly protein
750	 61.72	+1	925739..926911	+	390	94967781	-	Acid345_0750	-	periplasmic sensor signal transduction histidine kinase
751	 58.98	0	926933..928390	+	485	94967782	-	Acid345_0751	-	two component, sigma54 specific, Fis family transcriptional regulator
752	 58.52	0	928395..929057	-	220	94967783	-	Acid345_0752	-	hemolysin III family channel protein
753	 57.94	0	929268..930848	-	526	94967784	-	Acid345_0753	-	Alpha-L-arabinofuranosidase
754	 59.61	0	930963..933599	-	878	94967785	-	Acid345_0754	-	ABC efflux pump, inner membrane subunit
755	 55.29	-1	933596..933973	-	125	94967786	-	Acid345_0755	-	PadR family transcriptional regulator
756	 51.96	-2	934382..934789	+	135	94967787	-	Acid345_0756	-	hypothetical protein
757	 60.84	0	934889..935557	-	222	94967788	-	Acid345_0757	-	TPR repeat-containing protein
758	 60.34	0	935621..936916	-	431	94967789	-	Acid345_0758	-	glutamyl-tRNA reductase
759	 57.10	0	937206..937508	+	100	94967790	-	Acid345_0759	-	cytochrome c, class I
760	 54.58	-1	937660..937965	+	101	94967791	-	Acid345_0760	-	cytochrome c, class I
761	 62.30	+1	938002..938619	+	205	94967792	-	Acid345_0761	-	2Fe-2S protein
762	 62.29	+1	938622..940973	+	783	94967793	-	Acid345_0762	-	xanthine dehydrogenase, molybdenum binding subunit apoprotein
763	 61.57	+1	940976..941995	+	339	94967794	-	Acid345_0763	-	molybdopterin dehydrogenase, FAD-binding
764	 63.94	+2	942304..944613	-	769	94967795	-	Acid345_0764	-	hypothetical protein
765	 62.18	+1	944783..945496	+	237	94967796	-	Acid345_0765	-	hypothetical protein
766	 57.53	0	945627..946250	+	207	94967797	-	Acid345_0766	-	hypothetical protein
767	 59.97	0	946602..947273	+	223	94967798	-	Acid345_0767	-	glycine cleavage H-protein
768	 61.78	+1	947425..949083	+	552	94967799	-	Acid345_0768	-	TPR repeat-containing protein
769	 59.50	0	949080..949400	+	106	94967800	-	Acid345_0769	-	ethyl tert-butyl ether degradation EthD
770	 59.94	0	949414..951687	+	757	94967801	-	Acid345_0770	-	TPR repeat-containing serine/threonin protein kinase
771	 59.47	0	951684..952544	+	286	94967802	-	Acid345_0771	-	hypothetical protein
772	 56.47	0	952688..953089	-	133	94967803	-	Acid345_0772	-	hypothetical protein
773	 57.74	0	953236..954165	+	309	94967804	-	Acid345_0773	-	cytochrome c, class I
774	 53.41	-1	954162..954659	+	165	94967805	-	Acid345_0774	-	small integral membrane protein
775	 60.69	0	955012..955647	-	211	94967806	-	Acid345_0775	-	abortive infection protein
776	 60.83	0	955815..958760	-	981	94967807	-	Acid345_0776	-	excinuclease ABC subunit A
777	 64.95	+2	959400..960392	-	330	94967808	-	Acid345_0777	-	hypothetical protein
778	 59.72	0	960488..961480	+	330	94967809	-	Acid345_0778	-	hypothetical protein
779	 60.32	0	961481..963307	-	608	94967810	-	Acid345_0779	-	ATP dependent DNA ligase
780	 62.03	+1	963353..965593	-	746	94967811	-	Acid345_0780	-	hypothetical protein
781	 56.57	0	965853..966743	-	296	94967812	-	Acid345_0781	-	oxidoreductase
782	 60.30	0	966981..967310	-	109	94967813	-	Acid345_0782	-	hypothetical protein
783	 58.29	0	967343..970468	-	1041	94967814	-	Acid345_0783	-	TonB-dependent receptor
784	 58.36	0	970813..974040	-	1075	94967815	-	Acid345_0784	-	hypothetical protein
785	 62.15	+1	974604..975467	+	287	94967816	-	Acid345_0785	-	hypothetical protein
786	 59.98	0	975564..976415	+	283	94967817	-	Acid345_0786	-	hypothetical protein
787	 54.97	-1	976446..976787	-	113	94967818	-	Acid345_0787	-	histidine triad (HIT) protein
788	 60.69	0	976799..977317	+	172	94967819	-	Acid345_0788	-	acetyltransferase
789	 61.15	0	977387..978148	-	253	94967820	-	Acid345_0789	-	rare lipoprotein A
790	 56.28	0	978175..978405	-	76	94967821	-	Acid345_0790	-	hypothetical protein
791	 59.45	0	978745..979506	+	253	94967822	-	Acid345_0791	-	hypothetical protein
792	 59.02	0	979598..980290	+	230	94967823	-	Acid345_0792	-	hypothetical protein
793	 59.74	0	980576..982696	+	706	94967824	-	Acid345_0793	-	radical SAM family Fe-S protein
794	 59.91	0	982769..984943	-	724	94967825	-	Acid345_0794	-	lysine decarboxylase transcriptional regulator, CadC
795	 60.22	0	985164..986699	+	511	94967826	-	Acid345_0795	-	thiol oxidoreductase-like
796	 57.92	0	986835..987680	+	281	94967827	-	Acid345_0796	-	short-chain dehydrogenase/reductase SDR
797	 55.05	-1	987710..988234	-	174	94967828	-	Acid345_0797	-	hypothetical protein
798	 60.26	0	988431..989210	+	259	94967829	-	Acid345_0798	-	UbiE/COQ5 methyltransferase
799	 61.01	0	989314..990975	+	553	94967830	-	Acid345_0799	-	vitamin K epoxide reductase
800	 60.25	0	990993..992114	+	373	94967831	-	Acid345_0800	-	putative lipoprotein signal peptide
801	 54.69	-1	992157..993383	+	408	94967832	-	Acid345_0801	-	proteinase inhibitor I4, serpin
802	 58.90	0	993566..995251	+	561	94967833	-	Acid345_0802	-	radical SAM family Fe-S protein
803	 58.33	0	995421..995864	+	147	94967834	-	Acid345_0803	-	hypothetical protein
804	 63.08	+1	996395..997369	+	324	94967835	-	Acid345_0804	-	A/G-specific DNA glycosylase
805	 58.57	0	997369..997899	+	176	94967836	-	Acid345_0805	-	peroxiredoxin-like
806	 58.75	0	998087..999778	+	563	94967837	-	Acid345_0806	-	peptidase M28
807	 55.62	-1	999828..1000325	-	165	94967838	-	Acid345_0807	-	hypothetical protein
808	 58.86	0	1000440..1001900	+	486	94967839	-	Acid345_0808	-	TPR repeat-containing protein
809	 57.47	0	1002020..1004248	+	742	94967840	-	Acid345_0809	-	hypothetical protein
810	 62.38	+1	1004249..1006093	-	614	94967841	-	Acid345_0810	-	TonB-like protein
811	 54.95	-1	1006181..1006624	+	147	94967842	-	Acid345_0811	-	hypothetical protein
812	 61.31	+1	1006625..1007278	-	217	94967843	-	Acid345_0812	-	cyclase/dehydrase
813	 54.76	-1	1007400..1008155	+	251	94967844	-	Acid345_0813	-	hypothetical protein
814	 57.40	0	1008152..1010482	+	776	94967845	-	Acid345_0814	-	Amylo-alpha-1,6-glucosidase
815	 58.52	0	1010573..1011100	-	175	94967846	-	Acid345_0815	-	rubrerythrin
816	 57.30	0	1011179..1011541	-	120	94967847	-	Acid345_0816	-	hypothetical protein
817	 59.75	0	1011759..1012886	+	375	94967848	-	Acid345_0817	-	radical SAM family Fe-S protein
818	 57.65	0	1012883..1015090	-	735	94967849	-	Acid345_0818	-	hypothetical protein
819	 52.61	-2	1015759..1016007	+	82	94967850	-	Acid345_0819	-	hypothetical protein
820	 54.76	-1	1016227..1018755	+	842	94967851	-	Acid345_0820	-	glycogen/starch/alpha-glucan phosphorylase
821	 53.02	-2	1018800..1020221	-	473	94967852	-	Acid345_0821	-	PAS/PAC sensor signal transduction histidine kinase
822	 55.79	-1	1020564..1021538	+	324	94967853	-	Acid345_0822	-	response regulator receiver protein
823	 58.58	0	1021736..1023244	+	502	94967854	-	Acid345_0823	-	TPR repeat-containing protein
824	 57.27	0	1023346..1025016	+	556	94967855	-	Acid345_0824	-	ASPIC/UnbV
825	 58.63	0	1025268..1026275	+	335	94967856	-	Acid345_0825	-	ABC transporter, substrate-binding protein, aliphatic sulphonates
826	 59.73	0	1026291..1027112	+	273	94967857	-	Acid345_0826	-	ABC transporter, ATPase subunit
827	 57.44	0	1027105..1027863	+	252	94967858	-	Acid345_0827	-	ABC aliphatic sulfonate transporter, inner membrane subunit
828	 56.66	0	1027916..1028854	+	312	94967859	-	Acid345_0828	-	sulfate adenylyltransferase subunit 2
829	 57.11	0	1028854..1030485	+	543	94967860	-	Acid345_0829	-	sulfate adenylyltransferase subunit 1
830	 58.01	0	1030478..1031182	+	234	94967861	-	Acid345_0830	-	phosphoadenylylsulfate reductase (thioredoxin)
831	 56.48	0	1031237..1032994	+	585	94967862	-	Acid345_0831	-	hypothetical protein
832	 49.62	-2	1033041..1033304	-	87	94967863	-	Acid345_0832	-	hypothetical protein
833	 55.04	-1	1033911..1035656	+	581	94967864	-	Acid345_0833	-	hypothetical protein
834	 56.13	0	1035676..1036605	+	309	94967865	-	Acid345_0834	-	polysaccharide export protein
835	 54.79	-1	1036662..1038893	+	743	94967866	-	Acid345_0835	-	protein-tyrosine kinase
836	 55.96	0	1038928..1039926	+	332	94967867	-	Acid345_0836	-	hypothetical protein
837	 57.63	0	1039966..1041348	+	460	94967868	-	Acid345_0837	-	polysaccharide biosynthesis protein
838	 57.92	0	1041562..1042647	+	361	94967869	-	Acid345_0838	-	serine phosphatase
839	 61.33	+1	1042776..1043468	+	230	94967870	-	Acid345_0839	-	glyoxalase/bleomycin resistance protein/dioxygenase
840	 59.35	0	1043528..1044907	+	459	94967871	-	Acid345_0840	-	mercuric reductase
841	 61.41	+1	1044930..1045424	-	164	94967872	-	Acid345_0841	-	endoribonuclease L-PSP
842	 59.13	0	1045700..1046362	+	220	94967873	-	Acid345_0842	-	hypothetical protein
843	 58.82	0	1046364..1048505	+	713	94967874	-	Acid345_0843	-	PAS/PAC sensor signal transduction histidine kinase
844	 53.44	-1	1048538..1048930	+	130	94967875	-	Acid345_0844	-	response regulator receiver protein
845	 61.59	+1	1049003..1049554	+	183	94967876	-	Acid345_0845	-	response regulator receiver protein
846	 58.38	0	1050006..1050512	-	168	94967877	-	Acid345_0846	-	hypothetical protein
847	 60.94	0	1050524..1054087	-	1187	94967878	-	Acid345_0847	-	hypothetical protein
58.57	MEAN

2.67	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.