IslandPathversion 1.0

IslandPath Analysis: Acidobacteria bacterium Ellin345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.57 STD DEV: 2.67
Acidobacteria bacterium Ellin345, complete genome - 1..5650368
4777 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3415	 62.22	+1	4038471..4038875	+	134	94970446	-	Acid345_3419	-	hypothetical protein
3416	 60.37	0	4038875..4041526	+	883	94970447	-	Acid345_3420	-	hypothetical protein
3417	 59.59	0	4041527..4042360	+	277	94970448	-	Acid345_3421	-	hypothetical protein
3418	 61.06	0	4042360..4043037	+	225	94970449	-	Acid345_3422	-	hypothetical protein
3419	 60.79	0	4043037..4045502	+	821	94970450	-	Acid345_3423	-	hypothetical protein
3420	 59.60	0	4045634..4045930	-	98	94970451	-	Acid345_3424	-	XRE family plasmid maintenance system antidote protein
3421	 49.69	-2	4045940..4046257	-	105	94970452	-	Acid345_3425	-	plasmid maintenance system killer
3422	 61.60	+1	4046294..4048147	+	617	94970453	-	Acid345_3426	-	bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein
3423	 53.68	-1	4048239..4048469	+	76	94970454	-	Acid345_3427	-	exodeoxyribonuclease VII small subunit
3424	 58.59	0	4048791..4049471	+	226	94970455	-	Acid345_3428	-	DGPFAETKE domain-containing protein
3425	 60.18	0	4049479..4050603	-	374	94970456	ligC	Acid345_3429	-	ATP-dependent DNA ligase
3426	 60.19	0	4050665..4051744	+	359	94970457	-	Acid345_3430	-	oxidoreductase
3427	 55.65	-1	4051768..4052130	-	120	94970458	-	Acid345_3431	-	ankyrin
3428	 61.71	+1	4052142..4053089	+	315	94970459	-	Acid345_3432	-	farnesyl-diphosphate synthase
3429	 61.24	+1	4053175..4053930	+	251	94970460	-	Acid345_3433	-	LmbE-like protein
3430	 60.96	0	4054047..4054835	+	262	94970461	-	Acid345_3434	-	hypothetical protein
3431	 59.80	0	4054835..4055227	+	130	94970462	-	Acid345_3435	-	glyoxalase/bleomycin resistance protein/dioxygenase
3432	 56.87	0	4055224..4055856	-	210	94970463	-	Acid345_3436	-	O-methyltransferase family protein
3433	 58.12	0	4055857..4056558	-	233	94970464	-	Acid345_3437	-	beta-lactamase-like
3434	 56.18	0	4056569..4056940	-	123	94970465	-	Acid345_3438	-	rhodanese/sulfurtransferase-like protein
3435	 59.83	0	4057118..4058872	+	584	94970466	-	Acid345_3439	-	serine phosphatase
3436	 61.29	+1	4058869..4060152	+	427	94970467	-	Acid345_3440	-	diaminopimelate decarboxylase
3437	 58.73	0	4060440..4061435	-	331	94970468	-	Acid345_3441	-	hypothetical protein
3438	 59.68	0	4061439..4062326	-	295	94970469	-	Acid345_3442	-	protein of unknown function LppY and LpqO
3439	 60.74	0	4062389..4064059	-	556	94970470	-	Acid345_3443	-	amidohydrolase 3
3440	 58.24	0	4064360..4064905	+	181	94970471	-	Acid345_3444	-	BioY protein
3441	 61.87	+1	4064944..4065819	+	291	94970472	-	Acid345_3445	-	hypothetical protein
3442	 60.71	0	4065887..4066222	-	111	94970473	-	Acid345_3446	-	type IV pilus assembly PilZ
3443	 58.49	0	4066231..4067955	-	574	94970474	-	Acid345_3447	-	Zn-dependent hydrolase
3444	 60.00	0	4068106..4068660	+	184	94970475	-	Acid345_3448	-	ECF subfamily RNA polymerase sigma-24 factor
3445	 63.19	+1	4068671..4069015	+	114	94970476	-	Acid345_3449	-	hypothetical protein
3446	 60.52	0	4069072..4070292	-	406	94970477	-	Acid345_3450	-	penicillin-binding protein, transpeptidase
3447	 63.53	+1	4070733..4072007	-	424	94970478	-	Acid345_3451	-	cell division protein FtsZ
3448	 61.27	+1	4072068..4073309	-	413	94970479	-	Acid345_3452	-	cell division protein FtsA
3449	 58.91	0	4073318..4074361	-	347	94970480	-	Acid345_3453	-	cell division septal protein-like
3450	 60.92	0	4074545..4075240	-	231	94970481	-	Acid345_3454	-	hypothetical protein
3451	 58.82	0	4075470..4076183	+	237	94970482	-	Acid345_3455	-	Crp/FNR family transcriptional regulator
3452	 53.80	-1	4076696..4077208	+	170	94970483	-	Acid345_3456	-	hypothetical protein
3453	 61.20	0	4077205..4078137	-	310	94970484	-	Acid345_3457	-	MarR family transcriptional regulator
3454	 57.45	0	4078146..4078742	+	198	94970485	-	Acid345_3458	-	hypothetical protein
3455	 59.94	0	4078739..4081192	-	817	94970486	-	Acid345_3459	-	ABC efflux pump, inner membrane subunit
3456	 61.30	+1	4081315..4082580	-	421	94970487	-	Acid345_3460	-	major facilitator transporter
3457	 60.54	0	4082675..4085434	-	919	94970488	-	Acid345_3461	-	ABC efflux pump, inner membrane subunit
3458	 59.56	0	4085434..4085799	-	121	94970489	-	Acid345_3462	-	PadR family transcriptional regulator
3459	 62.10	+1	4085936..4086307	+	123	94970490	-	Acid345_3463	-	ArsR family transcriptional regulator
3460	 54.96	-1	4086309..4086701	+	130	94970491	-	Acid345_3464	-	glyoxalase/bleomycin resistance protein/dioxygenase
3461	 62.01	+1	4086716..4087252	+	178	94970492	-	Acid345_3465	-	hypothetical protein
3462	 53.73	-1	4087249..4087503	+	84	94970493	-	Acid345_3466	-	hypothetical protein
3463	 56.72	0	4087481..4087882	+	133	94970494	-	Acid345_3467	-	hypothetical protein
3464	 60.98	0	4088071..4090602	+	843	94970495	-	Acid345_3468	-	Hep_Hag
3465	 62.30	+1	4090697..4093030	+	777	94970496	-	Acid345_3469	-	Hep_Hag
3466	 58.16	0	4092990..4094318	-	442	94970497	-	Acid345_3470	-	putative thiol-disulfide isomerase or thioredoxin
3467	 62.16	+1	4094536..4097217	-	893	94970498	-	Acid345_3471	-	ABC efflux pump, inner membrane subunit
3468	 58.68	0	4097227..4097589	-	120	94970499	-	Acid345_3472	-	PadR family transcriptional regulator
3469	 46.30	-2	4098355..4098570	+	71	94970500	-	Acid345_3473	-	hypothetical protein
3470	 49.68	-2	4098590..4099525	-	311	94970501	-	Acid345_3474	-	Toll-interleukin receptor
3471	 53.31	-1	4099543..4100463	-	306	94970502	-	Acid345_3475	-	hypothetical protein
3472	 51.21	-2	4100531..4101559	-	342	94970503	-	Acid345_3476	-	HNH endonuclease
3473	 55.73	-1	4101916..4102482	-	188	94970504	-	Acid345_3477	-	hypothetical protein
3474	 54.07	-1	4102750..4103241	+	163	94970505	-	Acid345_3478	-	hypothetical protein
3475	 59.58	0	4103590..4105197	-	535	94970506	-	Acid345_3479	-	ABC transporter, ATPase subunit
3476	 62.14	+1	4105366..4106271	+	301	94970507	-	Acid345_3480	-	diguanylate cyclase with PAS/PAC sensor
3477	 58.83	0	4106281..4107186	+	301	94970508	-	Acid345_3481	-	chemotaxis protein
3478	 56.23	0	4107196..4107990	+	264	94970509	-	Acid345_3482	-	OmpA/MotB family outer membrane protein
3479	 57.76	0	4108115..4109911	+	598	94970510	-	Acid345_3483	-	peptidase M28
3480	 57.07	0	4109920..4111023	+	367	94970511	-	Acid345_3484	-	WD-40-like beta propeller repeat-containing protein
3481	 58.83	0	4111024..4111929	-	301	94970512	-	Acid345_3485	-	type IV pilus assembly PilZ
3482	 57.06	0	4112146..4112676	+	176	94970513	-	Acid345_3486	-	membrane protein
3483	 59.45	0	4112673..4113434	-	253	94970514	-	Acid345_3487	-	LytR/AlgR family transcriptional regulator
3484	 59.59	0	4113431..4114504	-	357	94970515	-	Acid345_3488	-	periplasmic sensor signal transduction histidine kinase
3485	 59.57	0	4114510..4115214	-	234	94970516	-	Acid345_3489	-	putative transmembrane protein
3486	 57.83	0	4115594..4117075	-	493	94970517	-	Acid345_3490	-	hypothetical protein
3487	 55.89	-1	4117281..4118561	-	426	94970518	-	Acid345_3491	-	Pro-Hyp dipeptidase
3488	 62.48	+1	4118638..4119831	-	397	94970519	-	Acid345_3492	-	Beta-ketoadipyl CoA thiolase
3489	 57.65	0	4119937..4121988	+	683	94970520	-	Acid345_3493	-	Beta-N-acetylhexosaminidase
3490	 56.74	0	4122055..4122336	+	93	94970521	-	Acid345_3494	-	hypothetical protein
3491	 57.12	0	4122496..4123605	+	369	94970522	-	Acid345_3495	-	NAD-dependent epimerase/dehydratase
3492	 56.24	0	4123602..4124915	+	437	94970523	-	Acid345_3496	-	radical SAM family Fe-S protein
3493	 59.27	0	4124912..4126330	+	472	94970524	-	Acid345_3497	-	UDP-glucose 6-dehydrogenase
3494	 58.12	0	4126561..4127145	+	194	94970525	-	Acid345_3498	-	transcription antitermination protein nusG
3495	 58.54	0	4127145..4128338	+	397	94970526	-	Acid345_3499	-	glycosyl transferase, group 1
3496	 59.67	0	4128348..4130819	-	823	94970527	-	Acid345_3500	-	ABC efflux pump, inner membrane subunit
3497	 62.18	+1	4131033..4132103	-	356	94970528	-	Acid345_3501	-	2-nitropropane dioxygenase, NPD
3498	 59.39	0	4132464..4133150	+	228	94970529	-	Acid345_3502	-	two component LuxR family transcriptional regulator
3499	 57.28	0	4133242..4136373	+	1043	94970530	-	Acid345_3503	-	multi-sensor signal transduction histidine kinase
3500	 60.68	0	4136441..4136824	+	127	94970531	-	Acid345_3504	-	response regulator receiver protein
3501	 60.06	0	4136828..4138825	+	665	94970532	-	Acid345_3505	-	response regulator receiver modulated diguanylate cyclase
3502	 58.58	0	4138891..4142478	-	1195	94970533	-	Acid345_3506	-	Cna B-type protein
3503	 59.03	0	4142760..4145222	-	820	94970534	kgd	Acid345_3507	-	alpha-ketoglutarate decarboxylase
3504	 59.38	0	4145358..4146002	-	214	94970535	-	Acid345_3508	-	hypothetical protein
3505	 58.07	0	4146130..4146897	+	255	94970536	-	Acid345_3509	-	short-chain dehydrogenase/reductase SDR
3506	 56.16	0	4147029..4149341	+	770	94970537	-	Acid345_3510	-	hypothetical protein
3507	 51.03	-2	4149473..4149715	-	80	94970538	-	Acid345_3511	-	hypothetical protein
3508	 60.36	0	4149774..4150661	-	295	94970539	-	Acid345_3512	-	ECF subfamily RNA polymerase sigma-24 factor
3509	 59.33	0	4150741..4151244	+	167	94970540	-	Acid345_3513	-	alkylhydroperoxidase AhpD
3510	 57.78	0	4151296..4152780	-	494	94970541	-	Acid345_3514	-	PAS/PAC sensor signal transduction histidine kinase
3511	 55.48	-1	4153491..4154795	+	434	94970542	-	Acid345_3515	-	hypothetical protein
3512	 56.55	0	4154859..4156064	+	401	94970543	-	Acid345_3516	-	hypothetical protein
3513	 51.92	-2	4158811..4159488	+	225	94970544	-	Acid345_3517	-	hypothetical protein
3514	 58.88	0	4159600..4159920	-	106	94970545	-	Acid345_3518	-	hypothetical protein
58.57	MEAN

2.67	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.