IslandPath Analysis: Acidobacteria bacterium Ellin345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 58.57   STD DEV: 2.67
Acidobacteria bacterium Ellin345, complete genome - 1..5650368
4777 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3235	 62.17	+1	3835897..3837096	-	399	94970266	-	Acid345_3239	-	acetyl-CoA acetyltransferase
3236	 58.98	0	3837257..3838024	+	255	94970267	-	Acid345_3240	-	abortive infection protein
3237	 62.84	+1	3838454..3839158	-	234	94970268	-	Acid345_3241	-	hypothetical protein
3238	 62.18	+1	3839352..3840488	-	378	94970269	-	Acid345_3242	-	chaperone DnaJ
3239	 61.54	+1	3840543..3841088	-	181	94970270	-	Acid345_3243	-	GrpE protein
3240	 59.58	0	3841095..3842138	-	347	94970271	-	Acid345_3244	-	heat-inducible transcription repressor HrcA
3241	 59.46	0	3842470..3843648	+	392	94970272	-	Acid345_3245	-	putative esterase
3242	 60.32	0	3843696..3846341	+	881	94970273	-	Acid345_3246	-	Beta-glucosidase
3243	 60.77	0	3846384..3847925	-	513	94970274	-	Acid345_3247	-	beta-lactamase
3244	 62.90	+1	3848010..3848858	-	282	94970275	-	Acid345_3248	-	cobyrinic acid a,c-diamide synthase
3245	 58.89	0	3848975..3850312	+	445	94970276	-	Acid345_3249	-	glycoside hydrolase, clan GH-D
3246	 63.16	+1	3850461..3851201	-	246	94970277	-	Acid345_3250	-	Beta and gamma crystallin
3247	 60.95	0	3851584..3852633	-	349	94970278	-	Acid345_3251	-	cytochrome d ubiquinol oxidase, subunit II
3248	 59.64	0	3852635..3854014	-	459	94970279	-	Acid345_3252	-	cytochrome bd ubiquinol oxidase, subunit I
3249	 61.37	+1	3854269..3854778	-	169	94970280	-	Acid345_3253	-	thioesterase superfamily protein
3250	 60.19	0	3855326..3855634	+	102	94970281	-	Acid345_3254	-	hypothetical protein
3251	 61.72	+1	3855812..3856600	-	262	94970282	-	Acid345_3255	-	short-chain dehydrogenase/reductase SDR
3252	 59.91	0	3856749..3858257	+	502	94970283	-	Acid345_3256	-	magnesium protoporphyrin chelatase, putative
3253	 55.69	-1	3858258..3859505	+	415	94970284	-	Acid345_3257	-	von Willebrand factor, type A
3254	 59.77	0	3859550..3859810	-	86	94970285	-	Acid345_3258	-	Zinc finger, CDGSH-type
3255	 60.19	0	3859826..3862033	-	735	94970286	-	Acid345_3259	-	Amylo-alpha-1,6-glucosidase
3256	 57.99	0	3862030..3863124	-	364	94970287	-	Acid345_3260	-	glycosyl transferase, group 1
3257	 60.80	0	3863236..3864360	-	374	94970288	-	Acid345_3261	-	hypothetical protein
3258	 61.22	0	3864371..3865471	-	366	94970289	-	Acid345_3262	-	hypothetical protein
3259	 58.62	0	3865468..3866586	-	372	94970290	-	Acid345_3263	-	glycosyl transferase, group 1
3260	 59.73	0	3866583..3867692	-	369	94970291	-	Acid345_3264	-	glycosyl transferase, group 1
3261	 59.34	0	3867701..3868819	-	372	94970292	-	Acid345_3265	-	NAD-dependent epimerase/dehydratase
3262	 59.42	0	3868816..3869739	-	307	94970293	-	Acid345_3266	-	hypothetical protein
3263	 56.86	0	3869785..3870702	-	305	94970294	-	Acid345_3267	-	methyltransferase type 11
3264	 59.88	0	3871022..3871507	-	161	94970295	-	Acid345_3268	-	hypothetical protein
3265	 60.19	0	3871577..3872980	-	467	94970296	-	Acid345_3269	-	two component, sigma54 specific, Fis family transcriptional regulator
3266	 58.64	0	3873073..3873396	-	107	94970297	-	Acid345_3270	-	hypothetical protein
3267	 58.75	0	3873671..3875755	-	694	94970298	-	Acid345_3271	-	BNR repeat-containing glycosyl hydrolase
3268	 61.58	+1	3875888..3877537	-	549	94970299	-	Acid345_3272	-	hypothetical protein
3269	 58.46	0	3877692..3878471	-	259	94970300	-	Acid345_3273	-	hypothetical protein
3270	 59.12	0	3878707..3880110	+	467	94970301	-	Acid345_3274	-	two component, sigma54 specific, Fis family transcriptional regulator
3271	 57.59	0	3880179..3882074	+	631	94970302	-	Acid345_3275	-	multi-sensor signal transduction histidine kinase
3272	 60.04	0	3882111..3882668	+	185	94970303	-	Acid345_3276	-	hypothetical protein
3273	 57.01	0	3882673..3883314	-	213	94970304	-	Acid345_3277	-	O-methyltransferase family protein
3274	 60.78	0	3883439..3884662	+	407	94970305	-	Acid345_3278	-	major facilitator transporter
3275	 59.66	0	3884729..3885499	+	256	94970306	-	Acid345_3279	-	enoyl-[acyl-carrier-protein] reductase [NADH]
3276	 56.35	0	3885506..3886009	+	167	94970307	-	Acid345_3280	-	hypothetical protein
3277	 57.70	0	3886011..3886445	-	144	94970308	-	Acid345_3281	-	hypothetical protein
3278	 60.99	0	3886455..3888023	-	522	94970309	-	Acid345_3282	-	hypothetical protein
3279	 59.86	0	3888020..3889018	-	332	94970310	-	Acid345_3283	-	TrkA-N
3280	 56.61	0	3889124..3890635	-	503	94970311	-	Acid345_3284	-	amino acid transporter
3281	 59.46	0	3890665..3892233	-	522	94970312	-	Acid345_3285	-	amino acid transporter
3282	 60.22	0	3892347..3892982	-	211	94970313	-	Acid345_3286	-	thiamine-phosphate pyrophosphorylase
3283	 59.96	0	3892983..3894338	-	451	94970314	-	Acid345_3287	-	acetyl-CoA carboxylase, biotin carboxylase
3284	 57.98	0	3894366..3894860	-	164	94970315	-	Acid345_3288	-	biotin carboxyl carrier protein
3285	 61.68	+1	3894928..3896031	-	367	94970316	-	Acid345_3289	-	peptidase M24
3286	 60.70	0	3896141..3896995	-	284	94970317	-	Acid345_3290	-	hypothetical protein
3287	 56.63	0	3897221..3897997	-	258	94970318	-	Acid345_3291	-	LytR/AlgR family transcriptional regulator
3288	 56.98	0	3897924..3899090	-	388	94970319	-	Acid345_3292	-	periplasmic sensor signal transduction histidine kinase
3289	 59.41	0	3899237..3900394	-	385	94970320	-	Acid345_3293	-	FAD dependent oxidoreductase
3290	 55.60	-1	3900533..3902077	+	514	94970321	-	Acid345_3294	-	hypothetical protein
3291	 58.67	0	3902079..3904166	-	695	94970322	-	Acid345_3295	-	glycogen debranching protein GlgX
3292	 60.05	0	3904305..3904682	+	125	94970323	-	Acid345_3296	-	CopY family transcriptional regulator
3293	 61.24	+1	3904679..3905950	+	423	94970324	-	Acid345_3297	-	peptidase M56, BlaR1
3294	 61.26	+1	3905994..3907529	+	511	94970325	-	Acid345_3298	-	peptidase S1C, Do
3295	 53.09	-2	3907968..3908615	-	215	94970326	-	Acid345_3299	-	sugar transferase
3296	 58.73	0	3908619..3909803	-	394	94970327	-	Acid345_3300	-	DegT/DnrJ/EryC1/StrS aminotransferase
3297	 56.05	0	3909881..3910558	-	225	94970328	-	Acid345_3301	-	methyltransferase type 11
3298	 57.29	0	3910619..3911620	-	333	94970329	-	Acid345_3302	-	hypothetical protein
3299	 62.05	+1	3911625..3912512	-	295	94970330	-	Acid345_3303	-	hypothetical protein
3300	 56.72	0	3912535..3914334	-	599	94970331	-	Acid345_3304	-	hypothetical protein
3301	 60.60	0	3914584..3915819	+	411	94970332	-	Acid345_3305	-	glycosyl transferase, group 1
3302	 58.65	0	3915806..3916903	-	365	94970333	-	Acid345_3306	-	UDP-N-acetylglucosamine 2-epimerase
3303	 59.46	0	3916928..3918106	-	392	94970334	-	Acid345_3307	-	glycosyl transferase, group 1
3304	 53.61	-1	3918103..3919458	-	451	94970335	-	Acid345_3308	-	hypothetical protein
3305	 57.10	0	3919461..3920996	-	511	94970336	-	Acid345_3309	-	O-antigen and teichoic acid export protein
3306	 58.92	0	3921043..3923313	-	756	94970337	-	Acid345_3310	-	protein-tyrosine kinase
3307	 59.49	0	3923338..3924312	-	324	94970338	-	Acid345_3311	-	polysaccharide export protein
3308	 58.09	0	3924335..3926083	-	582	94970339	-	Acid345_3312	-	hypothetical protein
3309	 59.30	0	3926085..3927197	-	370	94970340	-	Acid345_3313	-	DegT/DnrJ/EryC1/StrS aminotransferase
3310	 58.08	0	3927207..3928277	-	356	94970341	-	Acid345_3314	-	FAD dependent oxidoreductase
3311	 57.19	0	3928274..3928864	-	196	94970342	-	Acid345_3315	-	hexapaptide repeat-containing transferase
3312	 60.45	0	3928872..3929933	-	353	94970343	-	Acid345_3316	-	oxidoreductase
3313	 59.81	0	3930061..3932001	-	646	94970344	-	Acid345_3317	-	hypothetical protein
3314	 60.49	0	3932017..3932988	-	323	94970345	-	Acid345_3318	-	transglutaminase-like
3315	 56.42	0	3932992..3933957	-	321	94970346	-	Acid345_3319	-	hypothetical protein
3316	 57.81	0	3933961..3935427	-	488	94970347	-	Acid345_3320	-	hypothetical protein
3317	 60.58	0	3935514..3937205	-	563	94970348	-	Acid345_3321	-	hypothetical protein
3318	 56.40	0	3937228..3938970	-	580	94970349	-	Acid345_3322	-	hypothetical protein
3319	 58.48	0	3939379..3940758	+	459	94970350	-	Acid345_3323	-	secretion protein HlyD
3320	 59.24	0	3940813..3941580	+	255	94970351	-	Acid345_3324	-	ABC transporter, ATPase subunit
3321	 58.16	0	3942122..3942685	+	187	94970352	-	Acid345_3325	-	hypothetical protein
3322	 61.38	+1	3942777..3945161	+	794	94970353	-	Acid345_3326	-	carbohydrate-binding family V/XII protein
3323	 59.30	0	3945165..3946643	-	492	94970354	-	Acid345_3327	-	metallophosphoesterase
3324	 56.97	0	3946837..3947589	-	250	94970355	-	Acid345_3328	-	haloacid dehalogenase-like hydrolase
3325	 60.95	0	3947641..3948585	+	314	94970356	-	Acid345_3329	-	hypothetical protein
3326	 62.01	+1	3948604..3949698	+	364	94970357	-	Acid345_3330	-	hypothetical protein
3327	 58.65	0	3950213..3950761	-	182	94970358	-	Acid345_3331	-	hypothetical protein
3328	 58.82	0	3950824..3951384	-	186	94970359	-	Acid345_3332	-	hypothetical protein
3329	 60.71	0	3951418..3952860	-	480	94970360	-	Acid345_3333	-	amino acid transporter
3330	 62.66	+1	3952847..3955639	-	930	94970361	-	Acid345_3334	-	hypothetical protein
3331	 60.46	0	3955864..3957699	+	611	94970362	-	Acid345_3335	-	metal dependent phosphohydrolase
3332	 60.85	0	3957769..3958731	+	320	94970363	-	Acid345_3336	-	signal recognition particle-docking protein FtsY
3333	 63.08	+1	3958724..3959923	+	399	94970364	-	Acid345_3337	-	5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase
3334	 59.69	0	3959911..3960426	-	171	94970365	-	Acid345_3338	-	hypothetical protein
58.57	MEAN

2.67	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.