IslandPathversion 1.0

IslandPath Analysis: Acidobacteria bacterium Ellin345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.57 STD DEV: 2.67
Acidobacteria bacterium Ellin345, complete genome - 1..5650368
4777 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3144	 57.05	0	3742506..3743399	-	297	94970175	-	Acid345_3148	-	hypothetical protein
3145	 61.86	+1	3743486..3744649	-	387	94970176	-	Acid345_3149	-	phage integrase
3146	 61.69	+1	3745261..3745521	-	86	94970177	-	Acid345_3150	-	hypothetical protein
3147	 63.64	+1	3745532..3746125	-	197	94970178	-	Acid345_3151	-	hypothetical protein
3148	 57.28	0	3746109..3746534	-	141	94970179	-	Acid345_3152	-	hypothetical protein
3149	 59.59	0	3746539..3746976	-	145	94970180	-	Acid345_3153	-	hypothetical protein
3150	 61.90	+1	3746987..3747364	-	125	94970181	-	Acid345_3154	-	hypothetical protein
3151	 62.20	+1	3747398..3747778	-	126	94970182	-	Acid345_3155	-	hypothetical protein
3152	 62.71	+1	3747775..3750579	-	934	94970183	-	Acid345_3156	-	hypothetical protein
3153	 65.05	+2	3750580..3751011	-	143	94970184	-	Acid345_3157	-	hypothetical protein
3154	 63.80	+1	3751008..3751634	-	208	94970185	-	Acid345_3158	-	hypothetical protein
3155	 59.94	0	3751634..3752302	-	222	94970186	-	Acid345_3159	-	hypothetical protein
3156	 59.96	0	3752312..3755011	-	899	94970187	-	Acid345_3160	-	hypothetical protein
3157	 59.83	0	3755008..3757494	-	828	94970188	-	Acid345_3161	-	hypothetical protein
3158	 60.53	0	3757487..3757975	-	162	94970189	-	Acid345_3162	-	hypothetical protein
3159	 56.44	0	3757972..3758274	-	100	94970190	-	Acid345_3163	-	hypothetical protein
3160	 54.66	-1	3758277..3758684	-	135	94970191	-	Acid345_3164	-	hypothetical protein
3161	 57.97	0	3758681..3758956	-	91	94970192	-	Acid345_3165	-	hypothetical protein
3162	 60.56	0	3759141..3759566	-	141	94970193	-	Acid345_3166	-	hypothetical protein
3163	 61.02	0	3759632..3759985	-	117	94970194	-	Acid345_3167	-	hypothetical protein
3164	 66.67	+2	3760105..3760416	-	103	94970195	-	Acid345_3168	-	hypothetical protein
3165	 58.82	0	3760413..3760871	-	152	94970196	-	Acid345_3169	-	hypothetical protein
3166	 60.12	0	3760872..3761207	-	111	94970197	-	Acid345_3170	-	hypothetical protein
3167	 62.90	+1	3761207..3761578	-	123	94970198	-	Acid345_3171	-	hypothetical protein
3168	 64.21	+2	3761632..3762078	-	148	94970199	-	Acid345_3172	-	hypothetical protein
3169	 63.17	+1	3762156..3764501	-	781	94970200	-	Acid345_3173	-	peptidase S49
3170	 61.95	+1	3764498..3766108	-	536	94970201	-	Acid345_3174	-	phage portal protein, lambda
3171	 59.74	0	3766108..3766713	-	201	94970202	-	Acid345_3175	-	hypothetical protein
3172	 60.47	0	3766976..3769057	-	693	94970203	-	Acid345_3176	-	phage terminase GpA
3173	 63.04	+1	3769257..3769697	-	146	94970204	-	Acid345_3177	-	hypothetical protein
3174	 60.42	0	3769911..3770150	-	79	94970205	-	Acid345_3178	-	hypothetical protein
3175	 63.47	+1	3770140..3770514	-	124	94970206	-	Acid345_3179	-	hypothetical protein
3176	 57.26	0	3770511..3770744	-	77	94970207	-	Acid345_3180	-	hypothetical protein
3177	 63.43	+1	3770741..3771388	-	215	94970208	-	Acid345_3181	-	hypothetical protein
3178	 64.93	+2	3771571..3772146	-	191	94970209	-	Acid345_3182	-	hypothetical protein
3179	 64.47	+2	3772187..3772777	-	196	94970210	-	Acid345_3183	-	hypothetical protein
3180	 59.94	0	3772744..3773709	-	321	94970211	-	Acid345_3184	-	hypothetical protein
3181	 58.53	0	3773882..3774385	-	167	94970212	-	Acid345_3185	-	hypothetical protein
3182	 59.72	0	3774438..3774869	-	143	94970213	-	Acid345_3186	-	hypothetical protein
3183	 63.13	+1	3774878..3775555	-	225	94970214	-	Acid345_3187	-	hypothetical protein
3184	 60.89	0	3775854..3776390	-	178	94970215	-	Acid345_3188	-	hypothetical protein
3185	 65.04	+2	3776494..3777291	-	265	94970216	-	Acid345_3189	-	hypothetical protein
3186	 63.07	+1	3777857..3778162	-	101	94970217	-	Acid345_3190	-	response regulator receiver protein
3187	 60.97	0	3778195..3778668	-	157	94970218	-	Acid345_3191	-	hypothetical protein
3188	 63.10	+1	3778665..3778916	-	83	94970219	-	Acid345_3192	-	hypothetical protein
3189	 58.47	0	3778916..3780709	-	597	94970220	-	Acid345_3193	-	parB-like partition proteins
3190	 56.68	0	3781059..3781889	-	276	94970221	-	Acid345_3194	-	hypothetical protein
3191	 53.26	-1	3781927..3783246	-	439	94970222	-	Acid345_3195	-	hypothetical protein
3192	 59.51	0	3783577..3784386	+	269	94970223	-	Acid345_3196	-	zinc/iron transporter
3193	 59.26	0	3784388..3784630	-	80	94970224	-	Acid345_3197	-	hypothetical protein
3194	 59.83	0	3784677..3785759	-	360	94970225	-	Acid345_3198	-	translation-associated GTPase
3195	 58.96	0	3785852..3786370	-	172	94970226	-	Acid345_3199	-	hypothetical protein
3196	 58.87	0	3786536..3789010	+	824	94970227	-	Acid345_3200	-	hypothetical protein
3197	 60.42	0	3789055..3790014	-	319	94970228	-	Acid345_3201	-	ATPase
3198	 61.34	+1	3790169..3791125	-	318	94970229	-	Acid345_3202	-	HtpX-2 peptidase
3199	 62.24	+1	3791183..3791611	+	142	94970230	-	Acid345_3203	-	hypothetical protein
3200	 61.44	+1	3791659..3792978	-	439	94970231	-	Acid345_3204	-	hypothetical protein
3201	 58.33	0	3793019..3793366	-	115	94970232	-	Acid345_3205	-	hypothetical protein
3202	 61.52	+1	3793366..3793851	-	161	94970233	-	Acid345_3206	-	hypothetical protein
3203	 59.92	0	3793851..3795881	-	676	94970234	-	Acid345_3207	-	cytochrome c assembly protein
3204	 56.69	0	3796137..3796577	+	146	94970235	-	Acid345_3208	-	response regulator receiver protein
3205	 62.33	+1	3796574..3796942	-	122	94970236	-	Acid345_3209	-	response regulator receiver protein
3206	 57.68	0	3797135..3797401	-	88	94970237	-	Acid345_3210	-	hypothetical protein
3207	 58.44	0	3797601..3799643	-	680	94970238	-	Acid345_3211	-	amidohydrolase
3208	 60.14	0	3799721..3800977	-	418	94970239	-	Acid345_3212	-	aminopeptidase T
3209	 59.63	0	3801059..3801811	+	250	94970240	-	Acid345_3213	-	adenylate kinase
3210	 57.73	0	3802726..3803799	+	357	94970241	-	Acid345_3214	-	TonB-like protein
3211	 59.45	0	3803827..3805656	+	609	94970242	-	Acid345_3215	-	peptidase M48, Ste24p
3212	 57.60	0	3805730..3806479	+	249	94970243	-	Acid345_3216	-	hypothetical protein
3213	 59.89	0	3806555..3807115	+	186	94970244	-	Acid345_3217	-	hypothetical protein
3214	 58.89	0	3807170..3810397	-	1075	94970245	-	Acid345_3218	-	hypothetical protein
3215	 59.72	0	3810624..3812567	+	647	94970246	-	Acid345_3219	-	DNA mismatch repair protein MutL
3216	 63.29	+1	3812619..3813566	+	315	94970247	-	Acid345_3220	-	hypothetical protein
3217	 61.70	+1	3813563..3814246	+	227	94970248	-	Acid345_3221	-	cytidylate kinase
3218	 58.35	0	3814250..3815884	-	544	94970249	-	Acid345_3222	-	TPR repeat-containing protein
3219	 58.98	0	3815986..3817377	-	463	94970250	-	Acid345_3223	-	soluble pyridine nucleotide transhydrogenase
3220	 60.67	0	3817505..3818839	+	444	94970251	-	Acid345_3224	-	aminopeptidase P
3221	 59.32	0	3818843..3819877	+	344	94970252	-	Acid345_3225	-	abortive infection protein
3222	 61.06	0	3819867..3820169	-	100	94970253	-	Acid345_3226	-	hypothetical protein
3223	 63.30	+1	3820275..3820928	+	217	94970254	-	Acid345_3227	-	thymidylate kinase
3224	 53.02	-2	3820931..3821245	+	104	94970255	-	Acid345_3228	-	hypothetical protein
3225	 58.73	0	3821333..3822580	-	415	94970256	rho	Acid345_3229	-	transcription termination factor Rho
3226	 58.86	0	3823425..3827162	-	1245	94970257	-	Acid345_3230	-	Ig-like, group 2
3227	 57.54	0	3827303..3828211	-	302	94970258	-	Acid345_3231	-	hypothetical protein
3228	 52.81	-2	3828288..3828554	-	88	94970259	-	Acid345_3232	-	prevent-host-death protein
3229	 61.15	0	3828598..3830139	-	513	94970260	-	Acid345_3233	-	Mg chelatase-related protein
3230	 60.27	0	3830390..3831670	+	426	94970261	-	Acid345_3234	-	type IV pilus assembly PilZ
3231	 58.39	0	3832178..3832648	-	156	94970262	-	Acid345_3235	-	hypothetical protein
3232	 59.32	0	3833032..3835209	+	725	94970263	-	Acid345_3236	-	multi-sensor hybrid histidine kinase
3233	 57.45	0	3835282..3835563	+	93	94970264	-	Acid345_3237	-	hypothetical protein
3234	 58.82	0	3835594..3835848	+	84	94970265	-	Acid345_3238	-	hypothetical protein
3235	 62.17	+1	3835897..3837096	-	399	94970266	-	Acid345_3239	-	acetyl-CoA acetyltransferase
3236	 58.98	0	3837257..3838024	+	255	94970267	-	Acid345_3240	-	abortive infection protein
3237	 62.84	+1	3838454..3839158	-	234	94970268	-	Acid345_3241	-	hypothetical protein
3238	 62.18	+1	3839352..3840488	-	378	94970269	-	Acid345_3242	-	chaperone DnaJ
3239	 61.54	+1	3840543..3841088	-	181	94970270	-	Acid345_3243	-	GrpE protein
3240	 59.58	0	3841095..3842138	-	347	94970271	-	Acid345_3244	-	heat-inducible transcription repressor HrcA
3241	 59.46	0	3842470..3843648	+	392	94970272	-	Acid345_3245	-	putative esterase
3242	 60.32	0	3843696..3846341	+	881	94970273	-	Acid345_3246	-	Beta-glucosidase
3243	 60.77	0	3846384..3847925	-	513	94970274	-	Acid345_3247	-	beta-lactamase
58.57	MEAN

2.67	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.