IslandPathversion 1.0

IslandPath Analysis: Acidobacteria bacterium Ellin345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.57 STD DEV: 2.67
Acidobacteria bacterium Ellin345, complete genome - 1..5650368
4777 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3093	 60.37	0	3680939..3681907	+	322	94970124	-	Acid345_3097	-	NAD-dependent epimerase/dehydratase
3094	 59.33	0	3682018..3683367	+	449	94970125	-	Acid345_3098	-	aminotransferase
3095	 60.17	0	3683398..3684105	+	235	94970126	-	Acid345_3099	-	two component transcriptional regulator
3096	 58.77	0	3684086..3685516	+	476	94970127	-	Acid345_3100	-	periplasmic sensor signal transduction histidine kinase
3097	 58.72	0	3685513..3686343	+	276	94970128	-	Acid345_3101	-	hypothetical protein
3098	 58.36	0	3686495..3687325	+	276	94970129	-	Acid345_3102	-	Alpha/beta hydrolase
3099	 59.76	0	3687408..3687986	-	192	94970130	-	Acid345_3103	-	hypothetical protein
3100	 64.17	+2	3687983..3689104	-	373	94970131	-	Acid345_3104	-	monooxygenase, FAD-binding
3101	 60.57	0	3689109..3690158	-	349	94970132	-	Acid345_3105	-	chalcone and stilbene synthases-like
3102	 61.18	0	3690399..3691436	-	345	94970133	-	Acid345_3106	-	ketol-acid reductoisomerase
3103	 58.42	0	3691478..3692023	-	181	94970134	-	Acid345_3107	-	acetolactate synthase, small subunit
3104	 61.31	+1	3692034..3693749	-	571	94970135	-	Acid345_3108	-	acetolactate synthase, large subunit, biosynthetic type
3105	 62.83	+1	3693752..3695473	-	573	94970136	-	Acid345_3109	-	dihydroxy-acid dehydratase
3106	 65.00	+2	3695932..3696954	+	340	94970137	-	Acid345_3110	-	3-deoxy-D-arabinoheptulosonate-7-phosphate synthase
3107	 64.94	+2	3697059..3697520	+	153	94970138	-	Acid345_3111	-	(2Fe-2S)-binding protein
3108	 60.86	0	3697517..3699634	+	705	94970139	-	Acid345_3112	-	aldehyde oxidase and xanthine dehydrogenase molybdopterin binding
3109	 59.89	0	3699743..3701026	+	427	94970140	-	Acid345_3113	-	FAD dependent oxidoreductase
3110	 61.45	+1	3701019..3702359	-	446	94970141	-	Acid345_3114	-	amino acid transporter
3111	 53.12	-2	3702441..3702809	-	122	94970142	-	Acid345_3115	-	hypothetical protein
3112	 60.26	0	3702834..3705470	-	878	94970143	-	Acid345_3116	-	TPR repeat-containing serine/threonin protein kinase
3113	 58.87	0	3705552..3707384	-	610	94970144	-	Acid345_3117	-	excinuclease ABC subunit C
3114	 58.57	0	3707723..3708451	+	242	94970145	-	Acid345_3118	-	OmpA/MotB family outer membrane protein
3115	 59.23	0	3708517..3709860	-	447	94970146	-	Acid345_3119	-	hypothetical protein
3116	 59.84	0	3710045..3711436	-	463	94970147	-	Acid345_3120	-	hypothetical protein
3117	 55.56	-1	3711568..3712188	-	206	94970148	-	Acid345_3121	-	hypothetical protein
3118	 59.32	0	3712315..3715758	+	1147	94970149	-	Acid345_3122	-	glycosyl hydrolases 38-like
3119	 62.70	+1	3715755..3716006	-	83	94970150	-	Acid345_3123	-	hypothetical protein
3120	 56.97	0	3716120..3717016	+	298	94970151	-	Acid345_3124	-	LysR family transcriptional regulator
3121	 60.29	0	3717053..3717538	+	161	94970152	-	Acid345_3125	-	hypothetical protein
3122	 58.94	0	3717583..3719484	-	633	94970153	-	Acid345_3126	-	polysaccharide biosynthesis protein CapD
3123	 54.07	-1	3719819..3720604	-	261	94970154	-	Acid345_3127	-	methyltransferase type 11
3124	 59.83	0	3720879..3722327	+	482	94970155	-	Acid345_3128	-	hypothetical protein
3125	 57.46	0	3722649..3722876	+	75	94970156	-	Acid345_3129	-	hypothetical protein
3126	 57.24	0	3723115..3723729	+	204	94970157	-	Acid345_3130	-	hypothetical protein
3127	 61.37	+1	3723768..3724805	+	345	94970158	-	Acid345_3131	-	phosphate transporter
3128	 61.61	+1	3725288..3725821	+	177	94970159	-	Acid345_3132	-	ECF subfamily RNA polymerase sigma-24 factor
3129	 65.69	+2	3725814..3726842	+	342	94970160	-	Acid345_3133	-	TonB-like protein
3130	 59.84	0	3727291..3727803	-	170	94970161	-	Acid345_3134	-	hypothetical protein
3131	 60.08	0	3727800..3729272	-	490	94970162	-	Acid345_3135	-	radical SAM family Fe-S protein
3132	 64.85	+2	3729260..3730030	-	256	94970163	-	Acid345_3136	-	undecaprenyl pyrophosphate synthetase
3133	 57.55	0	3730055..3730438	-	127	94970164	-	Acid345_3137	-	hypothetical protein
3134	 62.11	+1	3730428..3731042	-	204	94970165	-	Acid345_3138	-	hypothetical protein
3135	 60.40	0	3731257..3731910	-	217	94970166	-	Acid345_3139	-	carbonic anhydrase
3136	 61.17	0	3732054..3733217	+	387	94970167	-	Acid345_3140	-	GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase
3137	 59.98	0	3733333..3735351	-	672	94970168	-	Acid345_3141	-	physarolisin II
3138	 57.14	0	3735740..3737167	+	475	94970169	-	Acid345_3142	-	L-glutamine synthetase
3139	 60.17	0	3737213..3737566	-	117	94970170	-	Acid345_3143	-	type IV pilus assembly PilZ
3140	 58.88	0	3737670..3739442	-	590	94970171	-	Acid345_3144	-	beta-lactamase
3141	 57.11	0	3739507..3739914	+	135	94970172	-	Acid345_3145	-	hypothetical protein
3142	 61.11	0	3739937..3740692	-	251	94970173	-	Acid345_3146	-	type IV pilus assembly PilZ
3143	 56.10	0	3741166..3742509	-	447	94970174	-	Acid345_3147	-	hypothetical protein
3144	 57.05	0	3742506..3743399	-	297	94970175	-	Acid345_3148	-	hypothetical protein
3145	 61.86	+1	3743486..3744649	-	387	94970176	-	Acid345_3149	-	phage integrase
3146	 61.69	+1	3745261..3745521	-	86	94970177	-	Acid345_3150	-	hypothetical protein
3147	 63.64	+1	3745532..3746125	-	197	94970178	-	Acid345_3151	-	hypothetical protein
3148	 57.28	0	3746109..3746534	-	141	94970179	-	Acid345_3152	-	hypothetical protein
3149	 59.59	0	3746539..3746976	-	145	94970180	-	Acid345_3153	-	hypothetical protein
3150	 61.90	+1	3746987..3747364	-	125	94970181	-	Acid345_3154	-	hypothetical protein
3151	 62.20	+1	3747398..3747778	-	126	94970182	-	Acid345_3155	-	hypothetical protein
3152	 62.71	+1	3747775..3750579	-	934	94970183	-	Acid345_3156	-	hypothetical protein
3153	 65.05	+2	3750580..3751011	-	143	94970184	-	Acid345_3157	-	hypothetical protein
3154	 63.80	+1	3751008..3751634	-	208	94970185	-	Acid345_3158	-	hypothetical protein
3155	 59.94	0	3751634..3752302	-	222	94970186	-	Acid345_3159	-	hypothetical protein
3156	 59.96	0	3752312..3755011	-	899	94970187	-	Acid345_3160	-	hypothetical protein
3157	 59.83	0	3755008..3757494	-	828	94970188	-	Acid345_3161	-	hypothetical protein
3158	 60.53	0	3757487..3757975	-	162	94970189	-	Acid345_3162	-	hypothetical protein
3159	 56.44	0	3757972..3758274	-	100	94970190	-	Acid345_3163	-	hypothetical protein
3160	 54.66	-1	3758277..3758684	-	135	94970191	-	Acid345_3164	-	hypothetical protein
3161	 57.97	0	3758681..3758956	-	91	94970192	-	Acid345_3165	-	hypothetical protein
3162	 60.56	0	3759141..3759566	-	141	94970193	-	Acid345_3166	-	hypothetical protein
3163	 61.02	0	3759632..3759985	-	117	94970194	-	Acid345_3167	-	hypothetical protein
3164	 66.67	+2	3760105..3760416	-	103	94970195	-	Acid345_3168	-	hypothetical protein
3165	 58.82	0	3760413..3760871	-	152	94970196	-	Acid345_3169	-	hypothetical protein
3166	 60.12	0	3760872..3761207	-	111	94970197	-	Acid345_3170	-	hypothetical protein
3167	 62.90	+1	3761207..3761578	-	123	94970198	-	Acid345_3171	-	hypothetical protein
3168	 64.21	+2	3761632..3762078	-	148	94970199	-	Acid345_3172	-	hypothetical protein
3169	 63.17	+1	3762156..3764501	-	781	94970200	-	Acid345_3173	-	peptidase S49
3170	 61.95	+1	3764498..3766108	-	536	94970201	-	Acid345_3174	-	phage portal protein, lambda
3171	 59.74	0	3766108..3766713	-	201	94970202	-	Acid345_3175	-	hypothetical protein
3172	 60.47	0	3766976..3769057	-	693	94970203	-	Acid345_3176	-	phage terminase GpA
3173	 63.04	+1	3769257..3769697	-	146	94970204	-	Acid345_3177	-	hypothetical protein
3174	 60.42	0	3769911..3770150	-	79	94970205	-	Acid345_3178	-	hypothetical protein
3175	 63.47	+1	3770140..3770514	-	124	94970206	-	Acid345_3179	-	hypothetical protein
3176	 57.26	0	3770511..3770744	-	77	94970207	-	Acid345_3180	-	hypothetical protein
3177	 63.43	+1	3770741..3771388	-	215	94970208	-	Acid345_3181	-	hypothetical protein
3178	 64.93	+2	3771571..3772146	-	191	94970209	-	Acid345_3182	-	hypothetical protein
3179	 64.47	+2	3772187..3772777	-	196	94970210	-	Acid345_3183	-	hypothetical protein
3180	 59.94	0	3772744..3773709	-	321	94970211	-	Acid345_3184	-	hypothetical protein
3181	 58.53	0	3773882..3774385	-	167	94970212	-	Acid345_3185	-	hypothetical protein
3182	 59.72	0	3774438..3774869	-	143	94970213	-	Acid345_3186	-	hypothetical protein
3183	 63.13	+1	3774878..3775555	-	225	94970214	-	Acid345_3187	-	hypothetical protein
3184	 60.89	0	3775854..3776390	-	178	94970215	-	Acid345_3188	-	hypothetical protein
3185	 65.04	+2	3776494..3777291	-	265	94970216	-	Acid345_3189	-	hypothetical protein
3186	 63.07	+1	3777857..3778162	-	101	94970217	-	Acid345_3190	-	response regulator receiver protein
3187	 60.97	0	3778195..3778668	-	157	94970218	-	Acid345_3191	-	hypothetical protein
3188	 63.10	+1	3778665..3778916	-	83	94970219	-	Acid345_3192	-	hypothetical protein
3189	 58.47	0	3778916..3780709	-	597	94970220	-	Acid345_3193	-	parB-like partition proteins
3190	 56.68	0	3781059..3781889	-	276	94970221	-	Acid345_3194	-	hypothetical protein
3191	 53.26	-1	3781927..3783246	-	439	94970222	-	Acid345_3195	-	hypothetical protein
3192	 59.51	0	3783577..3784386	+	269	94970223	-	Acid345_3196	-	zinc/iron transporter
58.57	MEAN

2.67	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.