IslandPathversion 1.0

IslandPath Analysis: Acidobacteria bacterium Ellin345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.57 STD DEV: 2.67
Acidobacteria bacterium Ellin345, complete genome - 1..5650368
4777 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2127	 59.91	0	2548217..2549149	+	310	94969158	-	Acid345_2131	-	hypothetical protein
2128	 59.19	0	2549191..2549511	-	106	94969159	-	Acid345_2132	-	hypothetical protein
2129	 52.12	-2	2549508..2549837	-	109	94969160	-	Acid345_2133	-	hypothetical protein
2130	 56.74	0	2549812..2551251	-	479	94969161	-	Acid345_2134	-	radical SAM family Fe-S protein
2131	 59.53	0	2551253..2552023	-	256	94969162	-	Acid345_2135	-	prolipoprotein diacylglyceryl transferase
2132	 58.19	0	2552116..2555490	-	1124	94969163	-	Acid345_2136	-	TonB-dependent receptor
2133	 60.95	0	2555805..2556818	-	337	94969164	-	Acid345_2137	-	glycerol-3-phosphate dehydrogenase (NAD(P)+)
2134	 57.56	0	2556815..2557462	-	215	94969165	-	Acid345_2138	-	acyl-phosphate glycerol-3-phosphate acyltransferase
2135	 61.26	+1	2557483..2558055	-	190	94969166	-	Acid345_2139	-	2',5' RNA ligase
2136	 61.61	+1	2558445..2559689	-	414	94969167	-	Acid345_2140	-	competence/damage-inducible protein cinA
2137	 61.00	0	2559887..2560927	-	346	94969168	-	Acid345_2141	-	hypothetical protein
2138	 61.93	+1	2561022..2561549	-	175	94969169	-	Acid345_2142	-	phosphatidylglycerophosphatase
2139	 58.44	0	2561524..2561766	-	80	94969170	-	Acid345_2143	-	hypothetical protein
2140	 58.55	0	2561769..2563283	-	504	94969171	-	Acid345_2144	-	hypothetical protein
2141	 51.69	-2	2563362..2564042	+	226	94969172	-	Acid345_2145	-	hypothetical protein
2142	 61.21	0	2564039..2566273	-	744	94969173	-	Acid345_2146	-	transglutaminase-like
2143	 57.72	0	2566414..2567274	+	286	94969174	-	Acid345_2147	-	hypothetical protein
2144	 56.74	0	2567318..2567992	-	224	94969175	-	Acid345_2148	-	GTP cyclohydrolase II
2145	 59.08	0	2568459..2571002	+	847	94969176	-	Acid345_2149	-	hypothetical protein
2146	 59.92	0	2571058..2571576	-	172	94969177	-	Acid345_2150	-	hypothetical protein
2147	 59.54	0	2571617..2573371	-	584	94969178	-	Acid345_2151	-	pyruvate oxidase
2148	 56.64	0	2573471..2573899	-	142	94969179	-	Acid345_2152	-	hemerythrin-like, metal-binding
2149	 57.03	0	2574064..2574447	+	127	94969180	-	Acid345_2153	-	putative phophoslipid binding protein
2150	 58.99	0	2574482..2574937	+	151	94969181	-	Acid345_2154	-	hypothetical protein
2151	 58.46	0	2574934..2575335	-	133	94969182	-	Acid345_2155	-	hypothetical protein
2152	 57.61	0	2575459..2577699	+	746	94969183	-	Acid345_2156	-	amino acid transporters
2153	 54.74	-1	2577757..2578167	+	136	94969184	-	Acid345_2157	-	hypothetical protein
2154	 55.87	-1	2578189..2578614	+	141	94969185	-	Acid345_2158	-	hypothetical protein
2155	 56.62	0	2578667..2579074	-	135	94969186	-	Acid345_2159	-	hypothetical protein
2156	 58.61	0	2579320..2580759	+	479	94969187	-	Acid345_2160	-	aromatic-L-amino-acid decarboxylase
2157	 54.68	-1	2580756..2581172	-	138	94969188	-	Acid345_2161	-	hypothetical protein
2158	 60.67	0	2581408..2582391	+	327	94969189	-	Acid345_2162	-	curli production assembly/transport component CsgG
2159	 62.35	+1	2582414..2583154	+	246	94969190	-	Acid345_2163	-	hypothetical protein
2160	 58.93	0	2583263..2583766	+	167	94969191	-	Acid345_2164	-	hypothetical protein
2161	 58.38	0	2583841..2584950	+	369	94969192	-	Acid345_2165	-	metallophosphoesterase
2162	 56.92	0	2585017..2586504	+	495	94969193	-	Acid345_2166	-	radical SAM family Fe-S protein
2163	 59.02	0	2586511..2587125	-	204	94969194	-	Acid345_2167	-	response regulator receiver protein
2164	 58.25	0	2587586..2588464	+	292	94969195	-	Acid345_2168	-	bile acid--sodium symporter
2165	 58.78	0	2588484..2589548	-	354	94969196	-	Acid345_2169	-	hypothetical protein
2166	 63.33	+1	2589676..2591115	-	479	94969197	-	Acid345_2170	-	hypothetical protein
2167	 51.35	-2	2591405..2591737	+	110	94969198	-	Acid345_2171	-	hypothetical protein
2168	 62.13	+1	2591897..2593330	-	477	94969199	-	Acid345_2172	-	GntR family transcriptional regulator
2169	 57.96	0	2593388..2594467	+	359	94969200	-	Acid345_2173	-	hypothetical protein
2170	 56.78	0	2594428..2594781	+	117	94969201	-	Acid345_2174	-	hypothetical protein
2171	 57.18	0	2594941..2596806	+	621	94969202	-	Acid345_2175	-	hypothetical protein
2172	 53.95	-1	2596883..2597173	+	96	94969203	-	Acid345_2176	-	hypothetical protein
2173	 55.42	-1	2597236..2597991	-	251	94969204	-	Acid345_2177	-	hypothetical protein
2174	 59.58	0	2598534..2600255	-	573	94969205	-	Acid345_2178	-	hypothetical protein
2175	 58.74	0	2600271..2601986	-	571	94969206	-	Acid345_2179	-	hypothetical protein
2176	 56.94	0	2602080..2603714	-	544	94969207	-	Acid345_2180	-	hypothetical protein
2177	 60.04	0	2603773..2605371	+	532	94969208	-	Acid345_2181	-	hypothetical protein
2178	 55.66	-1	2605462..2605770	+	102	94969209	-	Acid345_2182	-	hypothetical protein
2179	 58.53	0	2605777..2606526	+	249	94969210	-	Acid345_2183	-	glycerophosphoryl diester phosphodiesterase
2180	 60.35	0	2606528..2607445	+	305	94969211	-	Acid345_2184	-	abortive infection protein
2181	 59.03	0	2607869..2609086	+	405	94969212	-	Acid345_2185	-	MazG family protein
2182	 58.24	0	2609083..2609865	+	260	94969213	-	Acid345_2186	-	GCN5-related N-acetyltransferase
2183	 58.83	0	2609862..2610971	+	369	94969214	-	Acid345_2187	-	O-succinylbenzoate synthase
2184	 59.84	0	2610978..2612003	-	341	94969215	-	Acid345_2188	-	hypothetical protein
2185	 57.14	0	2612052..2612702	-	216	94969216	-	Acid345_2189	-	hypothetical protein
2186	 56.98	0	2612846..2613289	-	147	94969217	-	Acid345_2190	-	hypothetical protein
2187	 55.79	-1	2613402..2613971	+	189	94969218	-	Acid345_2191	-	peptidase S26A, signal peptidase I
2188	 56.73	0	2614047..2614499	+	150	94969219	-	Acid345_2192	-	hypothetical protein
2189	 58.48	0	2614541..2614882	+	113	94969220	-	Acid345_2193	-	hypothetical protein
2190	 57.58	0	2614994..2616115	+	373	94969221	-	Acid345_2194	-	carbamoyl-phosphate synthase small subunit
2191	 54.61	-1	2616120..2616716	+	198	94969222	-	Acid345_2195	-	hypothetical protein
2192	 57.24	0	2616713..2617720	+	335	94969223	-	Acid345_2196	-	hypothetical protein
2193	 59.53	0	2617724..2621032	+	1102	94969224	-	Acid345_2197	-	carbamoyl-phosphate synthase large subunit
2194	 57.05	0	2621019..2621330	+	103	94969225	-	Acid345_2198	-	hypothetical protein
2195	 61.09	0	2621371..2622285	+	304	94969226	-	Acid345_2199	-	GntR family transcriptional regulator
2196	 58.63	0	2622361..2622783	+	140	94969227	-	Acid345_2200	-	hypothetical protein
2197	 57.40	0	2622963..2623523	-	186	94969228	-	Acid345_2201	-	putative cytochrome P460
2198	 60.51	0	2623653..2624708	+	351	94969229	-	Acid345_2202	-	glycosyl hydrolase
2199	 59.96	0	2624692..2625600	-	302	94969230	-	Acid345_2203	-	tRNA pseudouridine synthase B
2200	 58.33	0	2625667..2626422	+	251	94969231	-	Acid345_2204	-	rhomboid-like protein
2201	 57.14	0	2626413..2626727	+	104	94969232	-	Acid345_2205	-	hypothetical protein
2202	 60.05	0	2626724..2627509	-	261	94969233	-	Acid345_2206	-	short-chain dehydrogenase/reductase SDR
2203	 59.68	0	2627542..2627913	-	123	94969234	-	Acid345_2207	-	hypothetical protein
2204	 56.83	0	2627959..2628558	-	199	94969235	-	Acid345_2208	-	GTP cyclohydrolase
2205	 54.17	-1	2628568..2628975	-	135	94969236	-	Acid345_2209	-	6-pyruvoyl tetrahydropterin synthase
2206	 57.25	0	2628972..2629385	-	137	94969237	-	Acid345_2210	-	6-pyruvoyl tetrahydropterin synthase
2207	 62.29	+1	2629395..2630468	-	357	94969238	-	Acid345_2211	-	glycosyl transferase family protein
2208	 54.73	-1	2630671..2631072	+	133	94969239	-	Acid345_2212	-	thioredoxin-like
2209	 60.83	0	2631134..2631544	-	136	94969240	-	Acid345_2213	-	hypothetical protein
2210	 62.93	+1	2631638..2634178	-	846	94969241	-	Acid345_2214	-	heavy metal translocating P-type ATPase
2211	 59.65	0	2634571..2634798	+	75	94969242	-	Acid345_2215	-	hypothetical protein
2212	 62.06	+1	2634858..2635595	+	245	94969243	-	Acid345_2216	-	phosphoesterase, PA-phosphatase related
2213	 59.75	0	2635596..2636072	-	158	94969244	-	Acid345_2217	-	hypothetical protein
2214	 61.95	+1	2636700..2637632	+	310	94969245	-	Acid345_2218	-	protoheme IX farnesyltransferase
2215	 59.25	0	2637658..2640246	-	862	94969246	-	Acid345_2219	-	serine/threonine protein kinase
2216	 60.87	0	2640423..2641388	+	321	94969247	-	Acid345_2220	-	daunorubicin resistance ABC transporter ATPase subunit
2217	 59.37	0	2641390..2642211	+	273	94969248	-	Acid345_2221	-	ABC multidrug efflux pump, inner membrane subunit
2218	 59.01	0	2642216..2642659	+	147	94969249	-	Acid345_2222	-	hypothetical protein
2219	 61.21	0	2642756..2643250	+	164	94969250	-	Acid345_2223	-	single-strand binding protein
2220	 58.56	0	2643322..2644197	+	291	94969251	-	Acid345_2224	-	magnesium and cobalt transport protein CorA
2221	 57.98	0	2644188..2644889	+	233	94969252	-	Acid345_2225	-	hypothetical protein
2222	 57.86	0	2644893..2645789	-	298	94969253	-	Acid345_2226	-	TPR repeat-containing protein
2223	 58.59	0	2645900..2646382	+	160	94969254	-	Acid345_2227	-	hypothetical protein
2224	 55.35	-1	2646605..2647081	+	158	94969255	-	Acid345_2228	-	nuclear protein SET
2225	 57.63	0	2647198..2649642	+	814	94969256	-	Acid345_2229	-	aminopeptidase N-like
2226	 56.44	0	2649668..2649931	-	87	94969257	-	Acid345_2230	-	glutaredoxin
58.57	MEAN

2.67	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.