IslandPathversion 1.0

IslandPath Analysis: Acidobacteria bacterium Ellin345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.57 STD DEV: 2.67
Acidobacteria bacterium Ellin345, complete genome - 1..5650368
4777 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2064	 58.65	0	2478980..2479777	+	265	94969095	-	Acid345_2068	-	hypothetical protein
2065	 60.46	0	2479770..2480849	+	359	94969096	-	Acid345_2069	-	phage integrase
2066	 59.38	0	2481139..2482071	-	310	94969097	-	Acid345_2070	-	hypothetical protein
2067	 59.74	0	2482142..2484031	+	629	94969098	-	Acid345_2071	-	TonB-dependent receptor
2068	 58.97	0	2484085..2484954	-	289	94969099	-	Acid345_2072	-	putative outer membrane protein B, OmpB
2069	 57.52	0	2485158..2486021	-	287	94969100	-	Acid345_2073	-	parallel beta-helix repeat-containing protein
2070	 58.77	0	2486224..2487249	+	341	94969101	-	Acid345_2074	-	hypothetical protein
2071	 58.16	0	2487259..2488140	+	293	94969102	-	Acid345_2075	-	hypothetical protein
2072	 57.73	0	2488241..2488900	+	219	94969103	-	Acid345_2076	-	hypothetical protein
2073	 54.11	-1	2488950..2489363	+	137	94969104	-	Acid345_2077	-	hypothetical protein
2074	 60.47	0	2489367..2490383	-	338	94969105	-	Acid345_2078	-	sugar kinase
2075	 60.52	0	2490823..2492952	-	709	94969106	-	Acid345_2079	-	hypothetical protein
2076	 55.15	-1	2493250..2493909	+	219	94969107	-	Acid345_2080	-	TetR family transcriptional regulator
2077	 57.71	0	2493912..2495708	+	598	94969108	-	Acid345_2081	-	AMP-dependent synthetase and ligase
2078	 59.93	0	2496279..2497139	-	286	94969109	-	Acid345_2082	-	undecaprenyl-diphosphatase
2079	 59.77	0	2497235..2498191	-	318	94969110	-	Acid345_2083	-	hypothetical protein
2080	 59.36	0	2498220..2499218	-	332	94969111	-	Acid345_2084	-	pyridoxal-5'-phosphate-dependent enzyme, beta subunit
2081	 61.67	+1	2499246..2500286	-	346	94969112	-	Acid345_2085	-	glycosyl transferase, group 1
2082	 62.36	+1	2500289..2501077	-	262	94969113	-	Acid345_2086	-	LmbE-like protein
2083	 61.05	0	2501147..2501983	+	278	94969114	dapD	Acid345_2087	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
2084	 59.53	0	2502135..2503451	+	438	94969115	-	Acid345_2088	-	sodium--dicarboxylate symporter
2085	 53.80	-1	2503448..2503750	-	100	94969116	-	Acid345_2089	-	addiction module toxin, RelE/StbE
2086	 60.61	0	2503754..2504050	-	98	94969117	-	Acid345_2090	-	RelB antitoxin
2087	 59.58	0	2504116..2504919	-	267	94969118	-	Acid345_2091	-	hypothetical protein
2088	 59.01	0	2504929..2506599	+	556	94969119	-	Acid345_2092	-	beta-lactamase-like
2089	 52.93	-2	2506596..2506988	+	130	94969120	-	Acid345_2093	-	hypothetical protein
2090	 57.91	0	2507005..2507541	+	178	94969121	-	Acid345_2094	-	hypothetical protein
2091	 60.46	0	2507498..2508802	+	434	94969122	-	Acid345_2095	-	hypothetical protein
2092	 60.39	0	2508996..2509967	+	323	94969123	-	Acid345_2096	-	cysteine synthase
2093	 59.20	0	2509971..2510747	+	258	94969124	-	Acid345_2097	-	serine O-acetyltransferase
2094	 59.07	0	2510748..2511287	+	179	94969125	-	Acid345_2098	-	hypothetical protein
2095	 57.49	0	2511288..2511734	-	148	94969126	-	Acid345_2099	-	hypothetical protein
2096	 59.59	0	2511953..2512489	-	178	94969127	-	Acid345_2100	-	ECF subfamily RNA polymerase sigma-24 factor
2097	 56.42	0	2512630..2514093	+	487	94969128	-	Acid345_2101	-	TonB-like protein
2098	 61.01	0	2514108..2515646	-	512	94969129	-	Acid345_2102	-	leucyl aminopeptidase
2099	 57.82	0	2515718..2516011	-	97	94969130	-	Acid345_2103	-	hypothetical protein
2100	 59.52	0	2516135..2516554	-	139	94969131	-	Acid345_2104	-	cyclic nucleotide-binding protein
2101	 59.85	0	2516660..2517187	-	175	94969132	-	Acid345_2105	-	hypothetical protein
2102	 57.34	0	2517362..2518069	-	235	94969133	-	Acid345_2106	-	type IV pilus assembly PilZ
2103	 58.18	0	2518238..2518885	-	215	94969134	-	Acid345_2107	-	hypothetical protein
2104	 61.37	+1	2519446..2520747	-	433	94969135	-	Acid345_2108	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
2105	 61.20	0	2520928..2523213	+	761	94969136	-	Acid345_2109	-	hypothetical protein
2106	 60.78	0	2523252..2525936	-	894	94969137	-	Acid345_2110	-	glycoside hydrolase family protein
2107	 64.52	+2	2526204..2526482	+	92	94969138	-	Acid345_2111	-	hypothetical protein
2108	 51.47	-2	2526653..2526856	+	67	94969139	-	Acid345_2112	-	hypothetical protein
2109	 55.23	-1	2527031..2527738	-	235	94969140	-	Acid345_2113	-	TonB-like protein
2110	 54.81	-1	2527806..2528075	-	89	94969141	-	Acid345_2114	-	hypothetical protein
2111	 62.41	+1	2529654..2530451	+	265	94969142	-	Acid345_2115	-	hypothetical protein
2112	 60.97	0	2530555..2532501	-	648	94969143	-	Acid345_2116	-	peptidase S9, prolyl oligopeptidase
2113	 61.81	+1	2532604..2533323	+	239	94969144	-	Acid345_2117	-	RNA methyltransferase TrmH, group 1
2114	 58.59	0	2533320..2534111	-	263	94969145	-	Acid345_2118	-	agmatinase
2115	 61.65	+1	2534119..2534736	-	205	94969146	-	Acid345_2119	-	hypothetical protein
2116	 57.18	0	2534841..2536442	+	533	94969147	-	Acid345_2120	-	hypothetical protein
2117	 56.39	0	2536443..2536919	-	158	94969148	-	Acid345_2121	-	alkylhydroperoxidase AhpD
2118	 58.75	0	2537002..2538276	-	424	94969149	-	Acid345_2122	-	major facilitator transporter
2119	 60.86	0	2538368..2539642	+	424	94969150	-	Acid345_2123	-	TonB-like protein
2120	 61.85	+1	2539696..2540193	-	165	94969151	-	Acid345_2124	-	proteophosphoglycan 5
2121	 59.17	0	2540354..2541100	+	248	94969152	-	Acid345_2125	-	hypothetical protein
2122	 61.04	0	2541190..2541687	-	165	94969153	-	Acid345_2126	-	GCN5-related N-acetyltransferase
2123	 58.04	0	2541774..2543849	-	691	94969154	-	Acid345_2127	-	phosphoesterase
2124	 58.95	0	2544004..2545752	-	582	94969155	-	Acid345_2128	-	multicopper oxidase, type 2
2125	 58.41	0	2545959..2546588	+	209	94969156	-	Acid345_2129	-	hypothetical protein
2126	 59.74	0	2546617..2548089	+	490	94969157	-	Acid345_2130	-	formiminotransferase-like
2127	 59.91	0	2548217..2549149	+	310	94969158	-	Acid345_2131	-	hypothetical protein
2128	 59.19	0	2549191..2549511	-	106	94969159	-	Acid345_2132	-	hypothetical protein
2129	 52.12	-2	2549508..2549837	-	109	94969160	-	Acid345_2133	-	hypothetical protein
2130	 56.74	0	2549812..2551251	-	479	94969161	-	Acid345_2134	-	radical SAM family Fe-S protein
2131	 59.53	0	2551253..2552023	-	256	94969162	-	Acid345_2135	-	prolipoprotein diacylglyceryl transferase
2132	 58.19	0	2552116..2555490	-	1124	94969163	-	Acid345_2136	-	TonB-dependent receptor
2133	 60.95	0	2555805..2556818	-	337	94969164	-	Acid345_2137	-	glycerol-3-phosphate dehydrogenase (NAD(P)+)
2134	 57.56	0	2556815..2557462	-	215	94969165	-	Acid345_2138	-	acyl-phosphate glycerol-3-phosphate acyltransferase
2135	 61.26	+1	2557483..2558055	-	190	94969166	-	Acid345_2139	-	2',5' RNA ligase
2136	 61.61	+1	2558445..2559689	-	414	94969167	-	Acid345_2140	-	competence/damage-inducible protein cinA
2137	 61.00	0	2559887..2560927	-	346	94969168	-	Acid345_2141	-	hypothetical protein
2138	 61.93	+1	2561022..2561549	-	175	94969169	-	Acid345_2142	-	phosphatidylglycerophosphatase
2139	 58.44	0	2561524..2561766	-	80	94969170	-	Acid345_2143	-	hypothetical protein
2140	 58.55	0	2561769..2563283	-	504	94969171	-	Acid345_2144	-	hypothetical protein
2141	 51.69	-2	2563362..2564042	+	226	94969172	-	Acid345_2145	-	hypothetical protein
2142	 61.21	0	2564039..2566273	-	744	94969173	-	Acid345_2146	-	transglutaminase-like
2143	 57.72	0	2566414..2567274	+	286	94969174	-	Acid345_2147	-	hypothetical protein
2144	 56.74	0	2567318..2567992	-	224	94969175	-	Acid345_2148	-	GTP cyclohydrolase II
2145	 59.08	0	2568459..2571002	+	847	94969176	-	Acid345_2149	-	hypothetical protein
2146	 59.92	0	2571058..2571576	-	172	94969177	-	Acid345_2150	-	hypothetical protein
2147	 59.54	0	2571617..2573371	-	584	94969178	-	Acid345_2151	-	pyruvate oxidase
2148	 56.64	0	2573471..2573899	-	142	94969179	-	Acid345_2152	-	hemerythrin-like, metal-binding
2149	 57.03	0	2574064..2574447	+	127	94969180	-	Acid345_2153	-	putative phophoslipid binding protein
2150	 58.99	0	2574482..2574937	+	151	94969181	-	Acid345_2154	-	hypothetical protein
2151	 58.46	0	2574934..2575335	-	133	94969182	-	Acid345_2155	-	hypothetical protein
2152	 57.61	0	2575459..2577699	+	746	94969183	-	Acid345_2156	-	amino acid transporters
2153	 54.74	-1	2577757..2578167	+	136	94969184	-	Acid345_2157	-	hypothetical protein
2154	 55.87	-1	2578189..2578614	+	141	94969185	-	Acid345_2158	-	hypothetical protein
2155	 56.62	0	2578667..2579074	-	135	94969186	-	Acid345_2159	-	hypothetical protein
2156	 58.61	0	2579320..2580759	+	479	94969187	-	Acid345_2160	-	aromatic-L-amino-acid decarboxylase
2157	 54.68	-1	2580756..2581172	-	138	94969188	-	Acid345_2161	-	hypothetical protein
2158	 60.67	0	2581408..2582391	+	327	94969189	-	Acid345_2162	-	curli production assembly/transport component CsgG
2159	 62.35	+1	2582414..2583154	+	246	94969190	-	Acid345_2163	-	hypothetical protein
2160	 58.93	0	2583263..2583766	+	167	94969191	-	Acid345_2164	-	hypothetical protein
2161	 58.38	0	2583841..2584950	+	369	94969192	-	Acid345_2165	-	metallophosphoesterase
2162	 56.92	0	2585017..2586504	+	495	94969193	-	Acid345_2166	-	radical SAM family Fe-S protein
2163	 59.02	0	2586511..2587125	-	204	94969194	-	Acid345_2167	-	response regulator receiver protein
58.57	MEAN

2.67	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.