IslandPath Analysis: Thermotoga maritima MSB8



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.09   STD DEV: 3.37
Thermotoga maritima, complete genome - 0..1860725
1858 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 37.30 -2      323..448      	 +	41	15642776	-	TM0001	-	hypothetical protein	
2	 42.86         483..608      	 -	41	15642777	-	TM0002	-	hypothetical protein	
3	 39.02 -2     1767..1889     	 +	40	15642778	-	TM0003	-	hypothetical protein	
4	 34.38 -2     1927..2022     	 +	31	15642779	-	TM0004	-	hypothetical protein	
5	 46.75        3155..5107     	 -	650	15642780	-	TM0005	L	DNA helicase, putative	
6	 47.50        5104..6141     	 -	345	15642781	-	TM0006	H	muconate cycloisomerase	
7	 46.77        6145..7461     	 -	438	15642782	-	TM0007	E	hypothetical protein	
8	 46.67        7495..8169     	 +	224	15642783	-	TM0008	R	conserved hypothetical protein	
9	 47.79        8205..8633     	 -	142	15642784	-	TM0009	S	hypothetical protein	
10	 50.66 +1     8630..10453    	 -	607	15642785	-	TM0010	C	NADP-reducing hydrogenase, subunit C	
11	 50.65 +1    10472..10858    	 -	128	15642786	-	TM0011	C	NADP-reducing hydrogenase, subunit B	
12	 48.78       10855..11385    	 -	176	15642787	-	TM0012	C	NADP-reducing hydrogenase, subunit A	
13	 46.06       11547..12308    	 +	253	15642788	-	TM0013	C	conserved hypothetical protein	
14	 44.32       12318..13154    	 +	278	15642789	-	TM0014	N	methyl-accepting chemotaxis protein, putative	
15	 49.05       13245..13823    	 +	192	15642790	-	TM0015	C	pyruvate ferredoxin oxidoreductase, gamma subunit	
16	 46.08       13830..14135    	 +	101	15642791	-	TM0016	C	pyruvate ferredoxin oxidoreductase, delta subunit	
17	 50.55 +1    14132..15316    	 +	394	15642792	-	TM0017	C	pyruvate ferredoxin oxidoreductase, alpha subunit	
18	 48.92       15331..16305    	 +	324	15642793	-	TM0018	C	pyruvate ferredoxin oxidoreductase, beta subunit	
19	 50.19 +1    16347..17117    	 +	256	15642794	-	TM0019	Q	oxidoreductase, short chain dehydrogenase/reductase family	
20	 48.18       17114..17497    	 +	127	15642795	-	TM0020	D	conserved hypothetical protein	
21	 44.34       17494..17802    	 +	102	15642796	-	TM0021	S	conserved hypothetical protein	
22	 45.78       17799..19349    	 -	516	15642797	-	TM0022	L	DNA mismatch repair protein	
23	 48.10       19428..21398    	 -	656	15642798	-	TM0023	N	methyl-accepting chemotaxis protein	
24	 49.82 +1    21459..23387    	 -	642	15642799	-	TM0024	G	laminarinase	
25	 47.28       23400..25565    	 -	721	15642800	-	TM0025	G	beta-glucosidase	
26	 43.00       25549..25755    	 -	68	15642801	-	TM0026	-	hypothetical protein	
27	 46.72       25755..26561    	 -	268	15642802	-	TM0027	E	oligopeptide ABC transporter, ATP-binding protein	
28	 44.81       26558..27550    	 -	330	15642803	-	TM0028	E	oligopeptide ABC transporter, ATP-binding protein	
29	 47.09       27554..28396    	 -	280	15642804	-	TM0029	E	oligopeptide ABC transporter, permease protein	
30	 44.74       28400..29416    	 -	338	15642805	-	TM0030	E	oligopeptide ABC transporter, permease protein	
31	 49.97 +1    29479..31299    	 -	606	15642806	-	TM0031	E	oligopeptide ABC transporter, periplasmic oligopeptide-binding protein	
32	 40.66 -1    31324..32469    	 -	381	15642807	-	TM0032	K	transcriptional regulator, XylR-related	
33	 46.46       32828..34015    	 +	395	15642808	-	TM0033	E	hypothetical protein	
34	 47.21       34103..35176    	 +	357	15642809	-	TM0034	R	iron-sulfur cluster-binding protein	
35	 45.88       35265..36722    	 +	485	15642810	-	TM0035	-	hypothetical protein	
36	 41.52 -1    36719..37243    	 +	174	15642811	-	TM0036	R	conserved hypothetical protein	
37	 44.52       37240..38490    	 +	416	15642812	-	TM0037	T	conserved hypothetical protein	
38	 46.56       38501..38863    	 +	120	15642813	-	TM0038	H	6-pyruvoyl tetrahydrobiopterin synthase, putative	
39	 45.13       38860..39639    	 +	259	15642814	-	TM0039	S	conserved hypothetical protein	
40	 45.16       39643..40479    	 +	278	15642815	-	TM0040	H	dihydropteroate synthase	
41	 45.64       40539..40928    	 +	129	15642816	-	TM0041	H	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase	
42	 44.91       40912..41991    	 -	359	15642817	-	TM0042	E	aminopeptidase P, putative	
43	 43.53       42004..43749    	 -	581	15642818	-	TM0043	Q	ABC transporter, ATP-binding protein	
44	 44.81       43768..44403    	 -	211	15642819	-	TM0044	-	hypothetical protein	
45	 41.78 -1    44428..44652    	 +	74	15642820	-	TM0045	-	hypothetical protein	
46	 47.50       44686..44805    	 -	39	15642821	-	TM0046	-	hypothetical protein	
47	 48.03       44790..46007    	 -	405	15642822	-	TM0047	L	transposase, putative	
48	 48.01       45992..46318    	 -	108	15642823	-	TM0048	L	transposase	
49	 45.93       46296..47081    	 +	261	15642824	-	TM0049	C	iron-sulfur cluster-binding protein	
50	 44.52       47182..47646    	 +	154	15642825	-	TM0050	P	iron(II) transport protein A	
51	 45.92       47615..49624    	 +	669	15642826	-	TM0051	P	iron(II) transport protein B	
52	 41.14 -1    49621..49953    	 +	110	15642827	-	TM0052	-	hypothetical protein	
53	 44.20       49950..51044    	 +	364	15642828	-	TM0053	-	esterase, putative	
54	 44.50       51041..51631    	 +	196	15642829	-	TM0054	-	hypothetical protein	
55	 44.59       51632..53656    	 -	674	15642830	-	TM0055	G	alpha-glucuronidase	
56	 49.92 +1    53713..55695    	 -	660	15642831	-	TM0056	E	oligopeptide ABC transporter, periplasmic oligopeptide-binding protein, putative	
57	 45.23       55700..56716    	 -	338	15642832	-	TM0057	E	oligopeptide ABC transporter, ATP-binding protein	
58	 44.28       56713..57708    	 -	331	15642833	-	TM0058	E	oligopeptide ABC transporter, ATP-binding protein	
59	 45.82       57722..58810    	 -	362	15642834	-	TM0059	E	oligopeptide ABC transporter, permease protein	
60	 46.10       58839..59825    	 -	328	15642835	-	TM0060	E	oligopeptide ABC transporter, permease protein	
61	 49.18       60144..63323    	 +	1059	15642836	-	TM0061	G	endo-1,4-beta-xylanase A	
62	 47.04       63379..63918    	 +	179	15642837	-	TM0062	-	hypothetical protein	
63	 39.82 -1    63965..64411    	 -	148	15642838	-	TM0063	-	hypothetical protein	
64	 46.90       64423..65778    	 -	451	15642839	-	TM0064	G	uronate isomerase, putative	
65	 41.70 -1    65880..66620    	 +	246	15642840	-	TM0065	K	transcriptional regulator, IclR family	
66	 47.73       66683..67300    	 +	205	15642841	-	TM0066	G	2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase	
67	 46.86       67297..68316    	 +	339	15642842	-	TM0067	G	2-keto-3-deoxygluconate kinase	
68	 44.75       68329..69948    	 +	539	15642843	-	TM0068	G	D-mannonate oxidoreductase, putative	
69	 45.52       69945..71027    	 +	360	15642844	-	TM0069	G	D-mannonate hydrolase	
70	 42.62 -1    71049..72092    	 -	347	15642845	-	TM0070	G	endo-1,4-beta-xylanase B	
71	 46.59       72312..74189    	 +	625	15642846	-	TM0071	E	oligopeptide ABC transporter, periplasmic oligopeptide-binding protein	
72	 42.36 -1    74266..75273    	 +	335	15642847	-	TM0072	E	oligopeptide ABC transporter, permease protein	
73	 46.53       75281..76144    	 +	287	15642848	-	TM0073	E	oligopeptide ABC transporter, permease protein	
74	 46.95       76155..77153    	 +	332	15642849	-	TM0074	E	oligopeptide ABC transporter, ATP-binding protein	
75	 48.29       77140..78102    	 +	320	15642850	-	TM0075	E	oligopeptide ABC transporter, ATP-binding protein	
76	 48.91       78140..80476    	 +	778	15642851	-	TM0076	G	xylosidase	
77	 49.28       80481..81458    	 +	325	15642852	-	TM0077	Q	acetyl xylan esterase	
78	 45.78       81441..82211    	 -	256	15642853	-	TM0078	P	iron(III) ABC transporter, ATP-binding protein	
79	 46.85       82213..83181    	 -	322	15642854	-	TM0079	P	iron(III) ABC transporter, permease protein	
80	 48.28       83178..84167    	 -	329	15642855	-	TM0080	P	iron(III) ABC transporter, periplasmic-binding protein, putative	
81	 46.00       84320..84769    	 -	149	15642856	-	TM0081	S	conserved hypothetical protein	
82	 47.98       84774..85688    	 -	304	15642857	-	TM0082	N	flagellar hook-associated protein 3	
83	 48.39       85694..88270    	 -	858	15642858	-	TM0083	N	flagellar hook-associated protein 1	
84	 40.46 -1    88368..88718    	 -	116	15642859	-	TM0084	-	hypothetical protein	
85	 42.55 -1    88715..88996    	 -	93	15642860	-	TM0085	K	hypothetical protein	
86	 46.13       89061..90482    	 +	473	15642861	-	TM0086	R	virulence factor MviN-related protein	
87	 48.68       90463..91296    	 -	277	15642862	-	TM0087	R	conserved hypothetical protein	
88	 44.06       91293..95150    	 -	1285	15642863	-	TM0088	N	comE protein, putative	
89	 44.81       95157..95618    	 -	153	15642864	-	TM0089	-	hypothetical protein	
90	 40.77 -1    95615..96031    	 -	138	15642865	-	TM0090	-	hypothetical protein	
91	 37.70 -2    96028..96576    	 -	182	15642866	-	TM0091	-	hypothetical protein	
92	 38.81 -2    96548..97441    	 -	297	15642867	-	TM0092	-	hypothetical protein	
93	 38.28 -2    97530..97913    	 -	127	15642868	-	TM0093	-	hypothetical protein	
94	 44.25       97910..99109    	 -	399	15642869	-	TM0094	N	general secretion pathway protein F, putative	
95	 40.46 -1    99111..99587    	 -	158	15642870	-	TM0095	S	conserved hypothetical protein	
96	 44.08       99584..100504   	 -	306	15642871	-	TM0096	R	conserved hypothetical protein	
97	 44.66      100494..101111   	 -	205	15642872	-	TM0097	H	conserved hypothetical protein	
98	 47.17      101068..102375   	 -	435	15642873	-	TM0098	R	conserved hypothetical protein	
99	 42.25 -1   102372..103145   	 -	257	15642874	-	TM0099	-	hypothetical protein	
100	 45.91      103127..105193   	 -	688	15642875	-	TM0100	L	DNA ligase	

 
 46.09 MEAN 
 
 3.37  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.