IslandPath Analysis: Thermosynechococcus elongatus BP-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 54.11   STD DEV: 3.25
Thermosynechococcus elongatus BP-1, complete genome - 0..2593857
2475 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 60.16 +1      129..1142     	 +	337	22297545	tlr0001	-	-	ORF_ID:tlr0001~probable oxidoreductase	
2	 56.17        1351..2331     	 -	326	22297546	tll0002	-	-	serine proteinase	
3	 56.50        2402..2578     	 -	58	22297547	tsl0003	-	-	ORF_ID:tsl0003~unknown protein	
4	 48.39 -1     2577..2762     	 +	61	22297548	tsr0004	-	-	ORF_ID:tsr0004~unknown protein	
5	 54.51        2816..4534     	 +	572	22297549	ureC	-	-	urease alpha subunit	
6	 58.99 +1     4538..5032     	 +	164	22297550	tlr0006	-	-	ORF_ID:tlr0006~hypothetical protein	
7	 52.01        5430..7640     	 -	736	22297551	tll0007	-	-	cellulose synthase	
8	 53.61        7667..8746     	 -	359	22297552	ycf81	-	-	ORF_ID:tll0008~hypothetical protein	
9	 58.15 +1     8796..9758     	 -	320	22297553	tll0009	-	-	ORF_ID:tll0009~unknown protein	
10	 55.13        9717..10886    	 +	389	22297554	tlr0010	-	-	ABC transporter ATP-binding protein	
11	 56.93       10886..11296    	 +	136	22297555	tlr0011	-	-	ORF_ID:tlr0011~hypothetical protein	
12	 55.44       11299..12438    	 +	379	22297556	tlr0012	-	-	ORF_ID:tlr0012~hypothetical protein	
13	 57.70 +1    12457..13638    	 -	393	22297557	tll0013	-	-	N-acetyl-L-amino acid amidohydrolase	
14	 56.12       13685..14158    	 -	157	22297558	tll0014	-	-	ORF_ID:tll0014~hypothetical protein	
15	 56.35       14162..15625    	 -	487	22297559	tll0015	-	-	lignostilbene-alpha,beta-dioxygenase	
16	 55.83       15622..16977    	 -	451	22297560	tll0016	-	-	ORF_ID:tll0016~hypothetical protein	
17	 52.11       17096..17308    	 -	70	22297561	tsl0017	-	-	ORF_ID:tsl0017~hypothetical protein	
18	 55.49       17429..18859    	 +	476	22297562	tlr0018	-	-	phosphomannose isomerase / guanosine 5'-diphospho-D-mannose pyrophosphorylase	
19	 55.78       18870..19319    	 -	149	22297563	tll0019	-	-	ORF_ID:tll0019~hypothetical protein	
20	 55.63       19371..20294    	 -	307	22297564	crtE	-	-	geranylgeranyl pyrophosphate synthase	
21	 58.16 +1    20305..21150    	 -	281	22297565	folD	-	-	FolD bifunctional protein	
22	 56.55       21388..21723    	 -	111	22297566	tll0022	-	-	ORF_ID:tll0022~hypothetical protein	
23	 50.00 -1    21720..21917    	 -	65	22297567	tsl0023	-	-	ORF_ID:tsl0023~hypothetical protein	
24	 52.40       21994..22638    	 -	214	22297568	tll0024	-	-	ORF_ID:tll0024~hypothetical protein	
25	 51.30       22644..23105    	 -	153	22297569	tll0025	-	-	transcription regulator Fur family	
26	 48.67 -1    23238..23537    	 -	99	22297570	tll0026	-	-	ORF_ID:tll0026~hypothetical protein	
27	 52.54       23700..24683    	 +	327	22297571	tlr0027	-	-	ORF_ID:tlr0027~hypothetical protein	
28	 55.66       24680..25006    	 +	108	22297572	tlr0028	-	-	ORF_ID:tlr0028~hypothetical protein	
29	 52.32       25137..26279    	 +	380	22297573	tlr0029	-	-	two-component sensor histidine kinase	
30	 52.19       26276..27235    	 -	319	22297574	tll0030	-	-	ORF_ID:tll0030~unknown protein	
31	 51.50       28791..30485    	 +	564	22297575	tlr0031	-	-	reverse transcriptase	
32	 55.16       30580..31596    	 -	338	22297576	tll0032	-	-	UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase	
33	 53.23       31799..31984    	 +	61	22297577	nblA	-	-	phycobilisome degradation protein	
34	 51.36       32156..32449    	 -	97	22297578	tsl0034	-	-	ORF_ID:tsl0034~hypothetical protein	
35	 54.35       32957..33289    	 +	110	22297579	tlr0035	-	-	ORF_ID:tlr0035~unknown protein	
36	 56.57       33336..34058    	 +	240	22297580	sodB	-	-	superoxide dismutase	
37	 54.94       34003..35025    	 -	340	22297581	tll0037	-	-	phosphate starvation-induced protein	
38	 50.57 -1    35035..35208    	 -	57	22297582	rps21	-	-	30S ribosomal protein S21	
39	 52.26       35212..35565    	 -	117	22297583	tll0039	-	-	ORF_ID:tll0039~hypothetical protein	
40	 51.59       35569..35820    	 -	83	22297584	rps16	-	-	30S ribosomal protein S16	
41	 56.52       35921..36817    	 +	298	22297585	fabD	-	-	malonyl coenzyme A-acyl carrier protein transacylase	
42	 60.22 +1    36814..37449    	 +	211	22297586	tlr0042	-	-	ORF_ID:tlr0042~probable acyltransferase	
43	 53.67       37446..38468    	 -	340	22297587	gap1	-	-	glyceraldehyde 3-phosphate dehydrogenase	
44	 54.17       38491..38826    	 -	111	22297588	tll0044	-	-	ORF_ID:tll0044~hypothetical protein	
45	 54.13       38879..40426    	 -	515	22297589	ndhB	-	-	NADH dehydrogenase subunit 2	
46	 56.97       40601..41497    	 -	298	22297590	tll0046	-	-	ORF_ID:tll0046~hypothetical protein	
47	 52.51       41499..41837    	 -	112	22297591	tll0047	-	-	ORF_ID:tll0047~unknown protein	
48	 51.08       41841..42398    	 -	185	22297592	fur	-	-	ferric uptake regulation protein	
49	 54.87       42585..44516    	 -	643	22297593	tll0049	-	-	penicillin-binding protein	
50	 54.20       44678..45904    	 +	408	22297594	tyrS	-	-	tyrosyl tRNA synthetase	
51	 57.06       46286..49024    	 +	912	22297595	tlr0051	-	-	ORF_ID:tlr0051~probable proteinase	
52	 58.92 +1    49029..49751    	 +	240	22297596	ccdA	-	-	ORF_ID:tlr0052~putative c-type cytochrome biogenesis protein CcdA	
53	 53.39       50147..50869    	 +	240	22297597	tlr0053	-	-	branched-chain amino acid ABC transporter ATP-binding protein	
54	 54.69       50866..51441    	 -	191	22297598	tll0054	-	-	guanylate kinase	
55	 54.96       51518..52021    	 +	167	22297599	tlr0055	-	-	ORF_ID:tlr0055~biopolymer transport ExbD like protein	
56	 56.39       52031..52954    	 +	307	22297600	tlr0056	-	-	GTP-binding protein ERA homolog~ORF_ID:tlr0056	
57	 52.07       52959..53561    	 +	200	22297601	ureG	-	-	urease accessory protein G	
58	 51.17       53598..54584    	 +	328	22297602	tlr0058	-	-	ORF_ID:tlr0058~similar to serine protease	
59	 56.18       54653..55396    	 +	247	22297603	tlr0059	-	-	ORF_ID:tlr0059~unknown protein	
60	 56.72       55378..56664    	 -	428	22297604	tll0060	-	-	ORF_ID:tll0060~similar to DNA repair protein RAD32	
61	 56.56       56678..58132    	 -	484	22297605	tll0061	-	-	ORF_ID:tll0061~hypothetical protein	
62	 59.24 +1    58122..58700    	 -	192	22297606	tll0062	-	-	ORF_ID:tll0062~hypothetical protein	
63	 56.73       58741..58911    	 -	56	22297607	tsl0063	-	-	ORF_ID:tsl0063~similar to high light-inducible protein	
64	 52.92       58964..60127    	 -	387	22297608	tll0064	-	-	ORF_ID:tll0064~probable glycosyltransferase	
65	 55.76       60124..60957    	 -	277	22297609	thiG	-	-	thiamine biosynthesis protein	
66	 49.57 -1    61076..61543    	 +	155	22297610	tlr0066	-	-	ORF_ID:tlr0066~hypothetical protein	
67	 52.89       61591..62127    	 +	178	22297611	ribH	-	-	riboflavin synthase beta subunit	
68	 53.87       62148..62444    	 -	98	22297612	tsl0068	-	-	ORF_ID:tsl0068~unknown protein	
69	 55.13       62718..63740    	 +	340	22297613	asd	-	-	aspartate beta-semialdehyde dehydrogenese	
70	 54.12       63777..64613    	 -	278	22297614	tll0070	-	-	ORF_ID:tll0070~hypothetical protein	
71	 52.21       64616..65293    	 -	225	22297615	tll0071	-	-	ORF_ID:tll0071~hypothetical protein	
72	 52.53       65298..66485    	 -	395	22297616	tll0072	-	-	ORF_ID:tll0072~hypothetical protein	
73	 55.09       66470..67834    	 -	454	22297617	murD	-	-	UDP-N-acetylmuramoylalanine-D-glutamate ligase	
74	 55.24       67985..68413    	 +	142	22297618	tlr0074	-	-	ORF_ID:tlr0074~unknown protein	
75	 56.69       68437..68907    	 -	156	22297619	tll0075	-	-	ORF_ID:tll0075~hypothetical protein	
76	 56.00       68908..70407    	 -	499	22297620	ycf46	-	-	ORF_ID:tll0076~hypothetical protein	
77	 58.43 +1    70404..70901    	 -	165	22297621	tll0077	-	-	ORF_ID:tll0077~hypothetical protein	
78	 49.07 -1    70904..71335    	 -	143	22297622	tll0078	-	-	ORF_ID:tll0078~hypothetical protein	
79	 51.83       71398..71889    	 -	163	22297623	tll0079	-	-	ORF_ID:tll0079~hypothetical protein	
80	 56.82       71858..72994    	 -	378	22297624	tgt	-	-	tRNA-guanine transglycosylase	
81	 56.81       73361..73999    	 +	212	22297625	rpl3	-	-	50S ribosomal protein L3	
82	 56.08       74016..74648    	 +	210	22297626	rpl4	-	-	50S ribosomal protein L4	
83	 53.80       74641..74943    	 +	100	22297627	rpl23	-	-	50S ribosomal protein L23	
84	 57.21       74955..75821    	 +	288	22297628	rpl2	-	-	50S ribosomal protein L2	
85	 50.18 -1    75844..76122    	 +	92	22297629	rps19	-	-	30S ribosomal protein S19	
86	 57.18       76153..76521    	 +	122	22297630	rpl22	-	-	50S ribosomal protein L22	
87	 56.90       76534..77250    	 +	238	22297631	rps3	-	-	30S ribosomal protein S3	
88	 56.94       77265..77696    	 +	143	22297632	rpl16	-	-	50S ribosomal protein L16	
89	 48.36 -1    77699..77911    	 +	70	22297633	rpl29	-	-	50S ribosomal protein L29	
90	 53.41       77911..78159    	 +	82	22297634	rps17	-	-	30S ribosomal protein S17	
91	 51.22       78172..78540    	 +	122	22297635	rpl14	-	-	50S ribosomal protein L14	
92	 48.59 -1    78540..78893    	 +	117	22297636	rpl24	-	-	50S ribosomal protein L24	
93	 50.92       78951..79496    	 +	181	22297637	rpl5	-	-	50S ribosomal protein L5	
94	 55.72       79526..79927    	 +	133	22297638	rps8	-	-	30S ribosomal protein S8	
95	 53.90       79946..80509    	 +	187	22297639	rpl6	-	-	50S ribosomal protein L6	
96	 57.30       80510..80872    	 +	120	22297640	rpl18	-	-	50S ribosomal protein L18	
97	 55.43       80884..81408    	 +	174	22297641	rps5	-	-	30S ribosomal protein S5	
98	 57.20       81422..81886    	 +	154	22297642	rpl15	-	-	50S ribosomal protein L15	
99	 52.56       81899..83209    	 +	436	22297643	secY	-	-	preprotein translocase SecY subunit	
100	 52.89       83209..83796    	 +	195	22297644	tlr0100	-	-	adenylate kinase	

 
 54.11 MEAN 
 
 3.25  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.